LOC110489869 (LOC106605052)


Basic Information

Item Value
gene id LOC110489869
gene name LOC106605052
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41730685 ~ 41741910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562824.2
TGCAATattgcagggatcatcaactatatTCAGGTCCGCACGATTTCTAATTGAACCCTTGGAACGGATGGTCAGATGGCCGGAGTCCCGGAGCATAATTTCAAATCATTTTCATCGAAGTGGGAGGAGTATTTCGAATATTTGGGGGCGTAGTCAACCATATAAACTGACCAATGAGCTTACGAAGTAATTGGAAGTGGTGATTTTTAAACTAAGTGTGTTATGAACAAACATACGTTTTTTTGTAATGAAGTATAATTCTTTCACGTGAAAGTACATTTGTAGAAAATGTGAGATTCGTTTTAATCTAATGTACGGtgtaaaaaaaaagtgatttGGATTGCTTTTTAGCTTTGCACGTCTTTGTGCTCCGCAACGACCCGTAGCTAACGTTATTAGCTAAGCTAGCTTTGCTTTGGCCAGACAATATGCAGATGGTTAGATACCTAAAGGCGTTAACTTAGCTACACATATCCCAACCAGCTGGTTATTTACACCAGGGTCCGTTTTCTGCTTGTTAATTCACACATCAGAAGTATATATCGCACTATAGCGTAATGTCATATTTGTGTGTATAGATAGCTAGGCTCACAGTAACGTTAGCTGCCTCAACATATTAGCTACATTCTGCAGAGATGTTGGAGGAggagcatacagacagacagcaccaacTTGCCATGTTATGTCAGAAGCTCGACCGAATTAAAACAAGATATTTAATCGAAGATGAAACTGATAATATCAACCAGGCCATTGGCTCAAATTCCCCTGAAACGTGTCTCGCATATCTGATGGATTTGGAGAAGAAAGGAGACCCTCACTTGGATCCTAGTCATCTCACAAAGCTTACAGACTTCTATTCCCGTGTATTCTCAACTATGCCACTGGGAAAACACTGCAAAAATGAGAGCTATGCCAGAATGCTGGTCAGATTTGCAGAGCTGTATGTAATCCAAGACACCAAGGGGGCAGAGGACAACTTCAATGTTGCGACTACACACTGCCAGGATTTTGCTTTTGTCCACATTGCACATGCTCAGTTTGAACTGTCTCAAGGCAACACAAAGAAAAGTACTTGGATACTTCAGAGGGCCATTGAACTGAGTGCCAAACCCAACGACATGCTAGAGGCTGCTATGCAGAACTTGACTTTGGGCAAAGCAGAACTTCTTTCCTCTGAGGATAAGGAAAATGTACCAGTCTCAACTTATAATACACATGGTTCTGCGAAAAATGGAACAGAATTTCGCAAAGTCTCGAGAAACTCCGACTGTACAGGCGACTTGCAGCTTTCCAGTATTTTTTCTTCAGGAACAATGGAACCACGGAATGGACCCCGAGAGGACAAGGTTCCAGCTTGGAGGTCTGGTTCTCAACGAAAGAGAGCCGTTGGCATGgcagggagagagagcagtagactacAGGCAATCTCAGAAATGGATGATGATGACAGTGATGGAAGACAAGTGAAGATGGAGGCTCTCATCTCAAGTAGCTTGTCCAGGCAAACTTCTGGTTCAAGTGCGATGTTATCCTTGTCCTCGGCCAAGAAGCGTGTTGAAGATGGGGATTTCCTCAATCTAAAGACACCTATCATTAGCCCTGAGCCATGCCCATGGAAGGACATGAGAATTGTGGACTCCACCACTACACTGCTGCACAGGCAAGATAGGAGAGATGACACTAGGATGGAAGATACCACTGACAATATAAACCAGATAATTGGTTCCAACTCCCCTGAGGCTTGCCGGATGTATCTGACCAAGCTGGAGAAGAGGGGCAATCCTCAGACAGACACCAACCTTCTCCTAAAGCTGAAGGACAGCTATTCCAGAGTCTTCTCCAGACTGCCATTGGGAATGTACAGCAACAGTGAGAGCTATGCCAAGATGCTGGTCCGATATGCTGAACTCAAAGGCATTGATGACCCAGATGATGCTCGGGACAACTTCATCGTTGCGAGATCCAACTGCAAAAGCTTTGCCTTTGTGCACATAGCACATGCTCAGTTTGAGGTTGCTCGAGCTCAGGTCAAGAAAGGCACGTCAATACTACAGAAAGGCCTCCAGGTGAACGCAAAGCCCACTGAACTAATTGAGACTGCAATGCAGAAACTAAAAGCTGGGAATTATCAGTTTCTCCCCGCAGAAGACCGAGAGAGTCTCCCAGAGCCACTGTCTCACGGGTCATTGAGTCTGTCAAACTAtggtagagagagggagctggagattcccacccgtttacctctgaGCCAGACACAGCCCAAACCCTCTAGCATGGAGCTGTCTTCAGGGTGGAAAATACCAGCCCATGTAAGCAGAGTCGTGTCTCCAGAGGAGAAGCACACCCCTCCTGATTTCACGCCCATTCCACGTCTGGTGGACTCTCTACCCACCCCATCACTTCCTCTCCCGTCCAGACTCAACCCACCCGTCGCCTGCCAGATGCCCAACTACAAAGACACCAGGGCCAACAGTTACTTTACCCCTGGGGTCAAGAGGAACTCCCCATATGCGGGCCCTCTCTCAGCAGCCCATAAAGCCGGCCCTGCCCAGCAGCAGCCGTGCACCCCCCTCAGCCAGGTGTCCTATGCCCAACAGACCCACCAGGGTTCTGCCGTTGCTCTCTCAAACGAGTCCATTGTGATAAAGGGCAAACGGTTCCTCGTCCTGAAGATGATTGGCCGAGGTGGATCCAGTAAGGTGTACCAGGTTCTGGACCAACGTAATCAGCTGTTTGCTGTGAAGTATGTGAACCTGGAGGAGGCCGATGCCCAGACAGTGGAGAGCTACAAGAACGAGATAGAGCATCTCAATCGCCTGCAGCAGTACAGTGATCAGATCATCAAGCTGTATGATTATGAAATAACCAACAGCTACATCTACATGCTGATGGAATGTGGTAACCTGGACCTCAGCACCTGGCTACGCAACCGTAAAACTATCAACCCGCTGGAGAGGAAGTTATACTGGAAGAATATGCTGGAGGCAGTCCAGACCATCCACAAACATGGTATTGTCCATTGTGACTTGAAGCCAGCCAATTTTGTGATTGTGAATGCCTCGCTGAAATTGATTGACTTTGGCATTGCAAACAGCATCCAGCCTGATGTGACAAGCATTATGAAAGATTCTCAGGTTGGGACCTTGAACTACATGCCCCCTGAAGCCATCAAAGACACTTCATCCCAGCCAGGGAAGGCAAGCTCTAAGATTAGTACTAAAGGTGATGTGTGGTCCCTTGGTTGCATCATGTACTGCATGACCTATGGGAAGACTCCATTCCAGACCATCACCAACCAGATCACCAAGCTACACGCCATCATTGACCCGACCCATGAGATGGAGTTCCCTGACATTGCAGAGAAGGATCTGCTGGATGTGTTGAAGAGGTGCTTGGTACGAAACCCAAGAGAGCGGATTTCCATCGCGGAGCTGCTGGAGCATTCATACCTAAAGCTTCAGTCTCAGCAACAGTCACCTGTGCCAGCACCTCCTGACAATAATGATCTGAAGAGGATCCTCAACGAGCTCGCTGCCTTACAGTCTCCCAACAGCATTGCCAGGGCTGCTAATAACTTGGCGAAAATGTGCAACAGTGGTCGGAAACTGGACGCTGCAGGGTGTGTAAAGTCATCCAGCCATCTCAACTGGAAGATGTAGATGCTCCACTGATGGCCTAAAAAAAAACAAAGGGGTCAGCAGATGGGACTCCATTCCTAGCCTAAGTCGAGCTTTACCCAATAGATACACTGCCGATTCCATGCTTCAGCACAACCGGAAAAATACATGCTGTTTGGCAGTACACTGGCCCTGTTTGAATACTTTGAAAATGTTTCCTTCCCCTTTTTAAAGTAATCACTGATCTGTCATGTCTGGAATGGTGAAAGCTATGAAGTGGAACCTTTGCTTTTATTCTATCCAAGTATGTTAGATCAGTGATAACACAGAGGATGGGAGGAAAGAAGGAAGCATTTGAACTGTTTTTAAGCAGGGTCCATAAATGCCCTTGAGAGCTCTACCATCTCCATGTTTTATTCTCTCATGTCTTCATGACTTCCCCTTGCTCGCATCTTGAAGGATACGGATctacacttttttttctttttaagaTGGACACTTTTTTTTGTGTTTCCTTACTTTGCACATTTTACTGTACTCTCAAACATGTAACTACAAAAAAAAATGCTCAACAAATGAACTAGCTAACTGTATTattgatgtttatttatttcagctgtcAATTTCATCTGTAGTTATTTataggtgtgtgtatatacagttgaattcggaagtttacatacatgttagccaaatacatttacactcagtttttcacaattcctgacatttaatcctagtaaa

Function

NR:

description
dual specificity protein kinase Ttk-like

GO: NA

KEGG:

id description
K08866 TTK, MPS1; serine/threonine-protein kinase TTK/MPS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562824.2 True 4364 mRNA 0.46 24 41730685 41741910

Neighbor

gene id symbol gene type direction distance location
LOC110489853 sybu coding upstream 19895 41694437 ~ 41710790 (+)
LOC110489834 eny2 coding upstream 189031 41539240 ~ 41541654 (+)
LOC110489825 LOC106605056 coding upstream 269777 41454259 ~ 41460908 (+)
LOC110489815 LOC106605058 coding upstream 375485 41294681 ~ 41355200 (+)
LOC110489783 LOC106605064 coding upstream 845545 40881174 ~ 40885140 (+)
LOC110489877 LOC106605051 coding downstream 8129 41750039 ~ 41826833 (+)
LOC110489902 LOC106605050 coding downstream 295590 42037500 ~ 42039843 (+)
LOC110489918 NA coding downstream 325094 42067004 ~ 42092073 (+)
LOC110489908 LOC106605043 coding downstream 358380 42100290 ~ 42141745 (+)
LOC110489919 LOC106605045 coding downstream 408420 42139048 ~ 42220203 (+)
G143739 NA non-coding upstream 60378 41669792 ~ 41670307 (+)
G143237 NA non-coding upstream 333048 41397300 ~ 41397637 (+)
G143236 NA non-coding upstream 335578 41394853 ~ 41395107 (+)
G143235 NA non-coding upstream 338040 41392430 ~ 41392645 (+)
G143225 NA non-coding upstream 353998 41376316 ~ 41376687 (+)
G143778 NA non-coding downstream 463 41742373 ~ 41742549 (+)
G143779 NA non-coding downstream 1609 41743519 ~ 41743788 (+)
G143840 NA non-coding downstream 50803 41792713 ~ 41838218 (+)
G143860 LOC107662719 non-coding downstream 102065 41843975 ~ 41844344 (+)
G143940 NA non-coding downstream 230015 41971925 ~ 41972187 (+)
G139179 NA other upstream 3678941 38051359 ~ 38051744 (+)
G139101 NA other upstream 3786673 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 3789971 37919735 ~ 37940714 (+)
G139004 NA other upstream 3906675 37777061 ~ 37824010 (+)
G143938 LOC106605049 other downstream 226464 41968374 ~ 41969317 (+)
G144661 NA other downstream 768420 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 1988962 43730872 ~ 43731218 (+)
G146091 NA other downstream 2026797 43768707 ~ 43769162 (+)
G146114 NA other downstream 2057494 43799404 ~ 43799853 (+)

Expression


Co-expression Network