LOC110489877 (LOC106605051)


Basic Information

Item Value
gene id LOC110489877
gene name LOC106605051
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41750039 ~ 41826833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562836.2
GTAAAATAGGTCCCTCAAGTATTCAGGGTCGATTGGACAAGAGGCTGAACCCTCTGACACCACCCACTGTTTCAACCAACTACAGTCCCTTTCGAGTAAAAAGGGACGCTGTCATTATTATCTTCTTCCTGTTCAGTCCACTCACAACAGCAATGGCGGCTGCAGCACGGTTTCTTCTCAGAGGTGCAGTCTCCAAAGCCTCCATCGCGAATGTAAATGTCGGTGCTCAGAGCTCGTTTGGGATCACACTGCTGAGGTTATCCCCGAATTGCTCATCCAAAACTAAAACACAAAGAAGGAATGCTGCGCACTTCACCTACcaccctgaccctgtccccacaGAGTATGGCCCCACTACAAAGATGAATTTATTTCAGTCTGTGACCAGTGCCTTGGACAACACTCTCGCCAGCGACCCCACCGCAGTCATCTTTGGGGAGGATGTCGCCTTTGGTGGAGTATTTCGTTGCACCGTGGGTCTCCGAGACAAATATGgtaAAGACCGTGTCTTCAACACTCCTCTGTGTGAGCAAGGCATTGTGGGATTTGGAATCGGTGCGGCAGTTGCCGGTGCCACGGCCATCGCTGAGATCCAGTTTGCTGACTACATTTACCCTGCCTTCGACCAGATTGTAAATGAAGCAGCAAAGTACCGCTATCGCTCCGGCAACCTATTTGACTGCGGGAACCTCACCATCCGGGCGCCGTGGGGCTGCGTGGGCCACGGCTCGCTCTACCATTCCCAGAGTCCAGAGGCCTTCTTCGCCCACTGCCCAGGCATCAAGGTTGTAATACCCAGAGGTCCGGTCCAGTGTAAGGGACTGCTGCTGTCGTGCATCGCAGATCAGAACCCCTGCATATTCTTCGAGCCCAAGATCCTCTACAGAGCAGCGGTGGAGCAGGTCCCTACAGAGGCCTACACCATCCCACTTTCGCAGGCCGAGGTAATACAGGAAGGAAGTGACGTCACTCTGGTCGCGTGGGGAACACAGATTCATGTGCTGAGGGAAGTGGCCAACATGGCTCAGGAGAAGCTGGGTGTGTCCTGCGAACTCATAGATCTACAGACCATCTTGCCTTGGGACACTGAGACTGTTTGCAAGTCGGTGGCCAAGACCGGACGGTTGCTTATCAGTCACGAGGCTCCAATCACCGGAGGCTTTGCTGCCGAGATCAGCTCCACAGTGCAAGAGCAATGCTTCCTTAACCTAGAGGCGCCCATCGCTAGAGTCTGCGGCTACGACACTCCCTTCCCCCACATCTTCGAACCCTTCTACATCCCAGACAAGTGGAAGTGCTTTGACGCCATCAAGAAGTTGATCAGCTACTGATCTCAAACTACTGATCCCCAGAGCCACGTCTCGGAGGACCTGGACTCAGAGCTTCCTCTCGCCATTGTTCTCACCAATGGACATTATCCAGAAAAATACACTTTGTCGGCTATCCAATCAGGAAGCATAATCCAGACGGTTATTTTGGCCCTCCGTGTGCAAGCACGGACTGTTACTTCTGGTTTAGTGAACCTTTTCTGTAAATGGGGAATAGGTGTCCTCTTGGTCGTCTCTCTTACTACTGTACGCTTTCTAGCTTCCATGGTAAATCAGATCCACACAGACAGTTTCACAAACACTAATGTGAGTACCAGTAAGGGTTATTCTATAGGAACTCTGACTGTTACGATTGTTGAATGTTTCTCTGCCTCAGTCTTCCCTGTTTAATTTTACTCTTCGAATGACTCTATGCCTTTTCTAATTTTAGTTTTGTTTCACATCAAGTTGACTGTACTAAAAATAATGGACctgtttttttaatgaaaataaagTAATTGACCTTACAGTGGTACA

Function

NR:

description
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00167 BCKDHB, bkdA2; 2-oxoisovalerate dehydrogenase E1 component beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562836.2 True 1844 mRNA 0.50 11 41750039 41826833

Neighbor

gene id symbol gene type direction distance location
LOC110489869 LOC106605052 coding upstream 8129 41730685 ~ 41741910 (+)
LOC110489853 sybu coding upstream 39249 41694437 ~ 41710790 (+)
LOC110489834 eny2 coding upstream 208385 41539240 ~ 41541654 (+)
LOC110489825 LOC106605056 coding upstream 289131 41454259 ~ 41460908 (+)
LOC110489815 LOC106605058 coding upstream 394839 41294681 ~ 41355200 (+)
LOC110489902 LOC106605050 coding downstream 210667 42037500 ~ 42039843 (+)
LOC110489918 NA coding downstream 240171 42067004 ~ 42092073 (+)
LOC110489908 LOC106605043 coding downstream 273457 42100290 ~ 42141745 (+)
LOC110489919 LOC106605045 coding downstream 323497 42139048 ~ 42220203 (+)
LOC110489963 LOC106583951 coding downstream 425104 42251937 ~ 42383957 (+)
G143779 NA non-coding upstream 6251 41743519 ~ 41743788 (+)
G143778 NA non-coding upstream 7490 41742373 ~ 41742549 (+)
G143739 NA non-coding upstream 79732 41669792 ~ 41670307 (+)
G143237 NA non-coding upstream 352402 41397300 ~ 41397637 (+)
G143236 NA non-coding upstream 354932 41394853 ~ 41395107 (+)
G143860 LOC107662719 non-coding downstream 17142 41843975 ~ 41844344 (+)
G143940 NA non-coding downstream 145092 41971925 ~ 41972187 (+)
G143950 NA non-coding downstream 168109 41994942 ~ 41996046 (+)
G143953 LOC106605044 non-coding downstream 175618 42002451 ~ 42003243 (+)
G143977 NA non-coding downstream 245982 42072815 ~ 42073988 (+)
G139179 NA other upstream 3698295 38051359 ~ 38051744 (+)
G139101 NA other upstream 3806027 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 3809325 37919735 ~ 37940714 (+)
G139004 NA other upstream 3926029 37777061 ~ 37824010 (+)
G143938 LOC106605049 other downstream 141541 41968374 ~ 41969317 (+)
G144661 NA other downstream 683497 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 1904039 43730872 ~ 43731218 (+)
G146091 NA other downstream 1941874 43768707 ~ 43769162 (+)
G146114 NA other downstream 1972571 43799404 ~ 43799853 (+)

Expression


Co-expression Network