LOC110489902 (LOC106605050)


Basic Information

Item Value
gene id LOC110489902
gene name LOC106605050
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42037500 ~ 42039843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562883.2
TCACCCATTGTAATGGAACATGGTATAGCCTAAGCCTTGCAGTGGTTTGGCCGTCGCGGACTAATTTTTTCGCATACCCCACTTGGAGAAGGGTCTATTCTTTTGATTCGAGGGAAGCATCGTTGGACCAAGTGTGCTCAGATACTTTTGTTCGAACATTATATCGTGTTTTCTGTGCTTTATTGGACTCCTCGAAATCTAATGGCTGTTTACGCACTTCACGTCAAAGGCTGACTCGAACGTGTGCGAATACATTTTAGTGAGAACTGCGATAAAACGAACGTCAACCGGATTTGAAAGCCCCACTAACACGATGAGCATGGTGAGAGACTGGTTGGCAAAAAAAACTTTTATCTTCGGAAATGTATGCGAGGATGCTGTTTAGCTAATGAATGTAATCGTTGCCACCCAGTTTAAATCGGAAGTGAAGCTATTTCCTTCAGGAAAAAGGTTGAAAAGTAGCATTTTGCATGTGGAGGACAGGAACTTGAAGGTGGATTGTGTGACtcgggggggaaaaaaacatttgtacACGTTCTACGCGTTGTGCTTCGTTTAATCTATCAGACTCATTGGAACCACGGGTGAGAAAATGCGTTTTTTGAGCTCATTGTTATGTTGTAAACTTGAAGAAACCCGAGAGAATACGACTCTACTTCGTTTGTGGTTTTTCTTTGCTGTCCTTGTTTCAAATTCAGCCTGTCCTGACAAATGCGTCTGTTTCACATCCACGGTCAAATGTTTGAACCAGGGCTTATTCGCGGTTCCACAGCCATTGCCAGCAAACACTAAAACCCTGTTCATTACAGGGAACAACATTTCCCATCTCACAGCTGTGTCTTTCCCTGTGCCCCTTGAGCAGTTAACAGACTTGTATCTCACAGGAAACCAGGTGGAGCTGGTGGACCACAATGTATTCAACAACTTGCCAAATCTCAGGCTGCTAGACTTGAGTAACAACAGGATTCTGCATTTTAGTGCTCAAGCTTTCTCTGATTACAACAAACTGCTGGACCTTAACCTCAGCAGGGCTTTTTACAACCATACTTCCATGAGTGAGCTCTTCAGTCTGCTACGGAGTGGCGGAGCCCTTCAACTTACCCGCTTAGACCTGTCCAACAATGACCTGGTGGTCCTCCCTGAGGACATGTTCTCCCGCCTCTCCAACCTCACCATCCTCAACCTACAAAACAACTCCCTCATTTTCATCCAGAATGGGACGCTGAGTGTTCCTCGGCTTCGTGAGTTAGACTTGAGGGACAATGCCCTGAGGGAACTACCCAACACTACACTGATGGACTTCAGCCTCAAGCCTGGGCTTCAGGTGCATCTGGCAGGAAACCCTTGGCTCTGTGACTGCAATATCGAGGACCTTGTGGCCTGGCTGAAAAGCTCTGAGCAGGTCACAGACAAGCAGAATATGACCTGTTCTGACCCTGAGGTTCTGAGGCAGTTACCGTTGCTCCAGATAAAAGAGTTGGAGTGTACCTTTTCAGGTGAAATGAAAGGTGTGCTGGAGACCTCGTATGTCTTTCTGGGCATGGTGCTGGCCTTGATTGGAGTGATCTTTCTGTTGGTCCTCTACCTCAACAGGAAGGGGATCAAGCGGTGGATATACAATATTCGGGACGCATGCAGGGACCACATGGAGGGCTACCATTACAGTTCCATGGATTGAGAATCATGACTCAGATGGGGTTTGTGAGCGGGCTCTCTGTAATATAAAATGTTCCCTCCCTTGAGCAAAAAAGGATGGTACGTAAAACTCTAACAGACTTATTTTGACTTGTagtaactaggctatatacacacacatctatatcCTTTCTGCTGGTTATATTTGAATCACATTTTTGTTTCCACTTTCCTCCCACTGTACAGTGTTGCTATGCTTGTTTAGATGTCTTCATTCCTTTTTAATATAATGTGATTATTAAAGCACTTGCTAATTTATCTCACTAGTATTACACTTGTTCGGTGGACATTATCAACATTTTTCATGATGTACAGCTGAATAAAATGTATTGCGTTACTGTT

Function

NR:

description
trophoblast glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562883.2 True 2037 mRNA 0.45 2 42037500 42039843

Neighbor

gene id symbol gene type direction distance location
LOC110489877 LOC106605051 coding upstream 210667 41750039 ~ 41826833 (+)
LOC110489869 LOC106605052 coding upstream 295590 41730685 ~ 41741910 (+)
LOC110489853 sybu coding upstream 326710 41694437 ~ 41710790 (+)
LOC110489834 eny2 coding upstream 495846 41539240 ~ 41541654 (+)
LOC110489825 LOC106605056 coding upstream 576592 41454259 ~ 41460908 (+)
LOC110489918 NA coding downstream 27161 42067004 ~ 42092073 (+)
LOC110489908 LOC106605043 coding downstream 60447 42100290 ~ 42141745 (+)
LOC110489919 LOC106605045 coding downstream 110487 42139048 ~ 42220203 (+)
LOC110489963 LOC106583951 coding downstream 212094 42251937 ~ 42383957 (+)
LOC110489991 LOC106605026 coding downstream 489238 42529081 ~ 42572673 (+)
G143953 LOC106605044 non-coding upstream 34257 42002451 ~ 42003243 (+)
G143950 NA non-coding upstream 41454 41994942 ~ 41996046 (+)
G143940 NA non-coding upstream 65313 41971925 ~ 41972187 (+)
G143860 LOC107662719 non-coding upstream 193156 41843975 ~ 41844344 (+)
G143840 NA non-coding upstream 199282 41792713 ~ 41838218 (+)
G143977 NA non-coding downstream 32972 42072815 ~ 42073988 (+)
G144012 NA non-coding downstream 43778 42083621 ~ 42084114 (+)
G144016 NA non-coding downstream 49447 42089290 ~ 42089530 (+)
G144017 NA non-coding downstream 50769 42090612 ~ 42090915 (+)
G144034 NA non-coding downstream 98917 42138760 ~ 42139014 (+)
G143938 LOC106605049 other upstream 68183 41968374 ~ 41969317 (+)
G139179 NA other upstream 3985756 38051359 ~ 38051744 (+)
G139101 NA other upstream 4093488 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 4096786 37919735 ~ 37940714 (+)
G144661 NA other downstream 470487 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 1691029 43730872 ~ 43731218 (+)
G146091 NA other downstream 1728864 43768707 ~ 43769162 (+)
G146114 NA other downstream 1759561 43799404 ~ 43799853 (+)
G146165 NA other downstream 1846753 43886596 ~ 43889609 (+)

Expression


Co-expression Network