LOC110489918


Basic Information

Item Value
gene id LOC110489918
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42067004 ~ 42092073 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036748.1
tctttccctaGAGAAACTTGAATAATGCTGAATTCAGATGAATCATTTTAATCACATCACAAAAAACAAATATGCCAAGATCTGGGGAGGAAATCTTCCAAAACAATGGCTGCAGGGCACTGTTCCTTCCAAGTGCATGAAGAAGGAACACTATACACCCCACTGCATGCTGGGAGCTATTCTCTCGAGTCCCCCTTGTTGAGCTCAGTTTGACCATGCAGTGAGAATATCCAAGTGCATTGAAGACTGAAAACAGAGGGCTACGCTACAAGCTCATTCAGCCCGGCAAGACAGCAGGCAATGTCTCATCAACGCTGAGCCACAAAATGAACTCAGAGTGAGGGCTGAGATGGGTGTGTGTCAGGGACATGACCGCGGGCACCTACATTCTGGAGATATTATGTCACAAAGGAGTAGTTCTGGCCCTGGGGCGCTGTACACCCTGGTCTCATCATTACCAACGCTCCAATCGCTCCTGTCAACTGTCACTGGAAGGTCTATTCTCCTGACTGTCAGGCCTACCCCTCAGACACTCCATCAACCTACTGAGAAATCCAAGCTGCCTTTaaggaaaagttttttttttaaagatacagaaacaacaacaaattGCTGTTCAAATGTTTATCTTATATAGTGAAGAtacacaggtaactgccaaaaaaaaaaaaa
>XR_005036747.1
tctttccctaGAGAAACTTGAATAATGCTGAATTCAGATGAATCATTTTAATCACATCACAAAAAACAAATATGCCAAGATCTGGGGAGGAAATCTTCCAAAACAATGGCTGCAGGGCACTGTTCCTTCCAAGTGCATGAAGAAGGAACACTATACACCCCACTGCATGCTGGGAGCTATTCTCTCGAGTCCCCCTTGTTGAGCTCAGTTTGACCATGCAGTGAGAATATCCAAGTGCATTGAAGACTGAAAACAGAGGGCTACGCTACAAGCTCATTCAGCCCGGCAAGACAGCAGGCAATGTCTCATCAACGCTGAGCCACAAAATGAACTCAGAGTGAGGGCTGAGATGGGTGTGTGTCAGGGACATGACCGCGGGCACCTACATTCTGGAGATATTATGTCACAAAGGAGTAGTTCTGGCCCTGGGGTGCCTCCCTGCAGGAGCCCTCCACGAGGCTGACCCCTGCTGGCAGCTCCACGATTAGCAGGACCCGAGGAGTCCGGATGTGGAAGGACAAATCTCCTCCTGTAACTCTCAC

Function

NR:

description
E3 ubiquitin-protein ligase E3D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036748.1 False 672 mRNA 0.44 4 42067004 42071284
XR_005036747.1 True 542 mRNA 0.50 4 42067004 42092073

Neighbor

gene id symbol gene type direction distance location
LOC110489902 LOC106605050 coding upstream 27161 42037500 ~ 42039843 (+)
LOC110489877 LOC106605051 coding upstream 240171 41750039 ~ 41826833 (+)
LOC110489869 LOC106605052 coding upstream 325094 41730685 ~ 41741910 (+)
LOC110489853 sybu coding upstream 356214 41694437 ~ 41710790 (+)
LOC110489834 eny2 coding upstream 525350 41539240 ~ 41541654 (+)
LOC110489908 LOC106605043 coding downstream 8217 42100290 ~ 42141745 (+)
LOC110489919 LOC106605045 coding downstream 58257 42139048 ~ 42220203 (+)
LOC110489963 LOC106583951 coding downstream 159864 42251937 ~ 42383957 (+)
LOC110489991 LOC106605026 coding downstream 437008 42529081 ~ 42572673 (+)
LOC110489996 pnisr coding downstream 490286 42582359 ~ 42592552 (+)
G143953 LOC106605044 non-coding upstream 63761 42002451 ~ 42003243 (+)
G143950 NA non-coding upstream 70958 41994942 ~ 41996046 (+)
G143940 NA non-coding upstream 94817 41971925 ~ 41972187 (+)
G143860 LOC107662719 non-coding upstream 222660 41843975 ~ 41844344 (+)
G143840 NA non-coding upstream 228786 41792713 ~ 41838218 (+)
G144034 NA non-coding downstream 46687 42138760 ~ 42139014 (+)
G144176 NA non-coding downstream 293125 42385198 ~ 42385672 (+)
G144629 NA non-coding downstream 309825 42401898 ~ 42402244 (+)
G144634 NA non-coding downstream 312804 42404877 ~ 42405121 (+)
G143938 LOC106605049 other upstream 97687 41968374 ~ 41969317 (+)
G139179 NA other upstream 4015260 38051359 ~ 38051744 (+)
G139101 NA other upstream 4122992 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 4126290 37919735 ~ 37940714 (+)
G144661 NA other downstream 418257 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 1638799 43730872 ~ 43731218 (+)
G146091 NA other downstream 1676634 43768707 ~ 43769162 (+)
G146114 NA other downstream 1707331 43799404 ~ 43799853 (+)
G146165 NA other downstream 1794523 43886596 ~ 43889609 (+)

Expression


Co-expression Network