LOC110489963 (LOC106583951)


Basic Information

Item Value
gene id LOC110489963
gene name LOC106583951
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42251937 ~ 42383957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563003.2
GTGCTCATCGTTCTGTGTTGTCACTGGGAGAGCATTCACTGGCGCATCCACTTGTTGACCTGTGTTCACAACAGAGTTCAGGGTTACTGTTCGCTATTTAAAGAGGGAGGCAACATGGCACACGGTTTAGTCAAACGGGAATCAGTCGAGAGTGAGATGCATAAACCCGAAGACCAAAGTAAGATCTTTGTTTATACGAAGAAGAGGGGGTATGACGTTACACGTAACCCCTACCTGAACAAGggCATGGCCTTCTCCCTGGAGGAACGTCTCCAGCTGGGGATCCACGGCCTGCTGCCTCCCTGCTTCCTCAGCCAGGACGTTCAGCTCCTCCGGGTCCTCAAGAACTACGAGATGAAGAGGGACGACCTGGACAGATATGTGTTTCTGATGGGGCTCCAGGACAGGAATGAGAAGCTGTTCTACCGTGTGCTGACGTCCGACACGGAGAGGTTCATGCCTATTGTTTACACCCCCACCGTGGGCCTGGCCTGCCAGATGTATGGCCTTGCCTTCAGGAGACCCagGGGGCTTTTTATCACCATCCATGACCTCACTCACATCTCCACCGTGCTCCAGAGCTGGCCAGAGAAGGACATACGCGCGGTGTGTGTGACAGACGGAGAGAGGATCCTGGGCCTGGGGGACCTGGGCTGCTACGGCATGGGCATCCCTGTGGGCAAGCTGGCACTCTACACGGCCTGTGGAGGCATGCCACCCCAGCAGTGTCTGCCAGTCATGCTGGATGTGGGCACAGACAATGAGGAGCTGCTGAAGGACCCTCTATACATTGGGCTGAGACACAAGAGGATTCGAGGCCAGGCCTATGATGACCTGCTGGAGGAGTTTATGAAGGCAGTTTCGGACAGGTATGGAATGGATTGTCTCATCCAGTTTGAGGACTTTGCCAATACCAATGCCTTCCGTCTGCTGAGCAAGTACCGCGACCAGTACTGCACGTTCAACGATGACATCCAAGGTACCGCTGCAGTGGCGGTGGCCGGCCTACTCGCTGCCCTTCGTGTCACCAAGTGCAAGATGTCAGACCATACCATTGTATTCCAGGGTGCAGGGGAGGCTGCGATGGGGATAGCTGACCTCATCACGATGGCGATGGAGAAGGAGGGACTCTCCGAAGATGAGGCTCTGAGGAAGATCTGGATGGTTGACTCCAAGGGTCTCATCGTCAAGGGAAGAGACCACCTGACCCATGAGAAGGAGAGGTTTGCCCACGAACACAAGCAGATGAGGAACCTGGTAGATGTGGTACATGAGCTCAAACCCACAGCCATCATAGGTGTGGCAGCCATCTCTGGAGCTTTCACGGAGGAAATCATCAGGGACATGGCCTCGTTTAACGAGAGGCCGATCATCTTCGCCCTTAGCAACCCCACCAGCAAGGCAGAGTGCACTGCCGAGCAGTGCTACACCATCACAGAGGGGCGGGGCATCTTTGCCAGTGGCAGTCCATTTGACCCCGTGACCCTCCCTGATGGGCGGACGTTCTTCCCTGGCCAGGGCAACAATGCGTACGTGTTCCCAGGAGTCGGCCTGGGCGTCACCGCCTGTGCAATCCGACACATCACAGATGAGATCTTCCTCACCACCGCAGAgACCATTGCTGACCTGGTGACAGAGAAGGATCTGTCAGAGGGAAGACTGTACCCTCCCCTGAACACCATCAGAGATGTCTCTCTCAAGCTGGCCGTGAAGATCGTGGAGTTTGCCTATGAGCACAAGTTGGCGACGCTGTACCCGGAGCCTGAGGATAAGGAGGCTTTTGTGCGCTCCCTGATCTACAGCCCTGACTATGACGAGTTTGCTGTGGACTCTTACCGCTGGCCAGAGGACGCCATGACCATCCAGTCATGCAAACTGTGACGTGGTGGAGAGACTGAGGGCTAGGGACATGGGGCACAAAGGAGAAGTGATCCAGGATGGGAGTGAAGGAGACTACAAAAGTGCAATTTCATTAAGACAATGGTGATTGTAATTTTAATGTGAAAGAGAAAATATCTTAATGAATGTGATAGATACGAGCCGAAATAGACATGATCAAATAAAATGGTTTAAATGATTGTTTACTTCA

Function

NR:

description
PREDICTED: NADP-dependent malic enzyme-like

GO:

id name namespace
GO:0006108 malate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563003.2 True 2089 mRNA 0.54 14 42251937 42383957

Neighbor

gene id symbol gene type direction distance location
LOC110489919 LOC106605045 coding upstream 34162 42139048 ~ 42220203 (+)
LOC110489908 LOC106605043 coding upstream 110192 42100290 ~ 42141745 (+)
LOC110489918 NA coding upstream 159864 42067004 ~ 42092073 (+)
LOC110489902 LOC106605050 coding upstream 212094 42037500 ~ 42039843 (+)
LOC110489877 LOC106605051 coding upstream 425104 41750039 ~ 41826833 (+)
LOC110489991 LOC106605026 coding downstream 145124 42529081 ~ 42572673 (+)
LOC110489996 pnisr coding downstream 198402 42582359 ~ 42592552 (+)
LOC110490015 LOC106605038 coding downstream 209975 42593932 ~ 42616488 (+)
LOC110490022 LOC106605035 coding downstream 233745 42617702 ~ 42642160 (+)
LOC110490029 LOC106605030 coding downstream 280467 42664424 ~ 42683349 (+)
G144034 NA non-coding upstream 112923 42138760 ~ 42139014 (+)
G144017 NA non-coding upstream 161022 42090612 ~ 42090915 (+)
G144016 NA non-coding upstream 162407 42089290 ~ 42089530 (+)
G144012 NA non-coding upstream 167823 42083621 ~ 42084114 (+)
G144176 NA non-coding downstream 1241 42385198 ~ 42385672 (+)
G144629 NA non-coding downstream 17941 42401898 ~ 42402244 (+)
G144634 NA non-coding downstream 20920 42404877 ~ 42405121 (+)
G144706 NA non-coding downstream 99884 42483841 ~ 42486432 (+)
G144751 NA non-coding downstream 181595 42565552 ~ 42607102 (+)
G143938 LOC106605049 other upstream 282620 41968374 ~ 41969317 (+)
LOC110489834 eny2 other upstream 710346 41539240 ~ 41541654 (+)
G139179 NA other upstream 4200193 38051359 ~ 38051744 (+)
G139101 NA other upstream 4307925 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 4311223 37919735 ~ 37940714 (+)
G144661 NA other downstream 126373 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 1346915 43730872 ~ 43731218 (+)
G146091 NA other downstream 1384750 43768707 ~ 43769162 (+)
G146114 NA other downstream 1415447 43799404 ~ 43799853 (+)
G146165 NA other downstream 1502639 43886596 ~ 43889609 (+)

Expression


Co-expression Network