LOC110489971 (LOC106605027)


Basic Information

Item Value
gene id LOC110489971
gene name LOC106605027
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42495466 ~ 42501897 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563013.2
GCTCGCCCTTGCGCGTTAATGTGTCGAGGGGGTACCTTGCTGCTCCATTAGAAAAGCCGGATCACATACGCCACCGCATCACTTTGCGGGCGGAGATTGGCCTGTCCTCATCTCTCTGACTCCTTCTTGTCTCAATCAGTCACTGCGTGGTCTTCATGGTTCTCAAACCACTGAACGCAGAGCCAGCCATGCAAGCAACTCGGGCACCCACTATCAGTGTGTTTGCAGACTGCAGCATCCCGGCCGGCCTGCGGATAGGACCGGTGCAGGGTATCTTCAAACTAGGGAAATACGTTACTGATCGCAAAGAGGTGGTAACCAAGAAAAAGATTCGGCTGCTGAGGGGGGAAATCGTGGATGAATCAGGTTGCCATGTGCCAGACTGGATTGGGTGTATCCGGGCAGCCAGAAACAGTCAAGAACAGAACTTGGAGGCTGTCTCAGATCTACCTGGTGGGCAGATTTTCTATCGTGTGCTGACGGAGATCCCAGCCGGCGAGGAGCTGAGTGTGTGGTACTCCAACACTCTGGCCCAGTGGTACGACATCCCTACCACTGCCACTCCAACACACGACGAGAAAGgTGAAGAACGCTACATTTGCTGGTACTGCTGGAGAATATTTAAATATCCCAACACACTCAAGGCCCACGTCCATTTCCACTGCGCTTTGAGCAACGGGCGGGGCTTTGTGAACAGCGAGCAGGCCAGGAGCACAGACAGCTTCAGCAGGTCACCCAAATCCGGGGACATTCCCAACACCTCGGCCTCGCCCAGGAACGGCCACAACACCTCCATCTCAGACTCTGTCAGACGGACCGTGTCTTCCTCACCCTTCCTCAACAAAGCGGGGGTAGCAAAGAAACCCAGCTCtgaggagcaggacagagcacTTGACATGAGCGTTACCTCAGTCAGAAACCACGGACATCTCATGGGCCTTGGCGCAACGTCTTCAATGTTGAGCAACATGGGGTTCCACCCAGGCGTGCGCTCTGCATTCAAGCCAATGGGCCAATCCAAGGTCCCCGCGGCTGACGTCTACAGAGAGGAAACTAATGGGAAGCATAATGGACTAGGCTTCAGCAAACTCATGGGGAACATGAAATCGACGCGAGCCTTGAATGAACCTTTAACCGGAAGCCATTCCTCCAAGTGCGTCCATCCATTAGATTCTACATCTCCCGTGGTCCCGTGCGCAAACGCCATCAGGGGTTTTCCGTTAATACCTAATTTCGATGAGACATCGGCTTTCAAGCACGTGGAGAGCCGGATGCACTCTGGACTGTCCCCCTCGCGTTACTCTCAGATGTCCTCTGGATTCCAAATTGAGAGGTTTTCTCTGCCTCAGTTCGATGGCGTCAAGCCATATAATGGAGATTGCAATATCCCCCTCATGCCATTCACCGTGTACAATGGCGAGCTGCTTTATAGTTCACCCTACTACCCACTGAAATTCCATTTTAGCAATCTCCTAAAATACCCGGAGTCTATGTCCTACTTTGGCGCACCTGCACTCAACCAAGACCTGGGTTCAATAACCAACATTGACAGGGAGATAGCCATGCACACTCAACAGTTGTCTGAAATAGCCGTCGAAAAGAACCGAGTCAGGCTCGACTCTATGCCCACTGCTAACACAGGCTCAGGGAAGCCCAAAAAGGGACACTTATGTCTTTACTGTGGTAAACTGTACTCTCGGAAATACGGACTCAAGATCCACATGAGAACTCACACAGGGTACAAACCACTGAAGTGCAAAGTTTGTTTTCGGCCCTTCGGTGACCCCAGCAACCTGAATAAGCACATCCGTCTGCACGCGGAGGGGAACACCCCGTACAGGTGCGAGTTCTGTGGCAAGGTACTGGTGCGCCGGAGGGATTTGGAGCGTCATGTCAAATCAAGGCACCCTGGACAAACAATAAAAAAAGCTGAGGACAAAACCGAGGGCATATTCGAGGATCAAGAGCAAAAGAGCGACAATGACAGCGACGTAGATGTATGCTTCACCGATGATCAGAGCGACCAAGAATCCAGTAAAATAGATGATTAATTGAGATTTTGACACAAATAGGGGCTATGGCAAAGACGGCACAATGTTTTGTGAAATGGTTACAGGTTACCTGTACAGATTTCCGTGTAATTTATGTTTCTCCCAAGGAACGAAAGTTATTTATGTATGTTTTAAAGCTATTgaaaatgtaattgttttttatttaaaaaatcagATTAGGACTAGACAAGTTTCAAATTACAGCCTTTTCTTTTACAACAATGTCTATTCGTTTCAGATGGAACAAAGTATAGGCAGTATGATTTCAGAATTGTATAATATCACAGCTGATGATAATGCATTTCTTTTTTATATGCTAATTGGTAGCCAATATGTTCCCCAAATAGAGGTCGGCTGCACTTTAAAACAGTTATGAACAATTCATTATCAAGCCATGTAGGTCAAGTGTTTATTAAACACTGAATATCACACTTACTGCTATTTTTTAATTCATTTGAAGTACAATAACTTAAATGTTGCACTTTCTTGCGAGGGCATTTAATTGTTTTAGGACAAAGTTGAGAAGGACAGCAAATATTTATAGCAGTTAGTACCAATCCATTATTTAAGGATCTTGTTTATAGTAGAAAATAACATCTGATTTAAAAAGCATCATGTACAAATGTAAGAATATGATATTTCACTGTTCAGTGAAAAAGTGTTGTACGTTTGTTCATAAGTGATATTGTATATTGACAATATTTCCCTCTTGTTCACTGAGTTGTTCCTTTTTAATAAATGTAATTTAAAACT

Function

NR:

description
PR domain zinc finger protein 13-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K24645 PRDM13; PR domain zinc finger protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563013.2 True 2804 mRNA 0.46 4 42495466 42501897

Neighbor

gene id symbol gene type direction distance location
LOC118940237 NA coding downstream 154993 42314091 ~ 42340473 (-)
LOC110489954 LOC106605048 coding downstream 271708 42217647 ~ 42223758 (-)
LOC110501561 LOC106605047 coding downstream 395171 42085411 ~ 42100295 (-)
LOC110489894 LOC106605044 coding downstream 464625 41994937 ~ 42030841 (-)
LOC110489886 LOC106605049 coding downstream 525516 41963722 ~ 41969950 (-)
LOC110489980 LOC106605028 coding upstream 8425 42510322 ~ 42517281 (-)
LOC118936750 NA coding upstream 184242 42686139 ~ 42687000 (-)
LOC110490045 LOC106605033 coding upstream 222181 42724078 ~ 42727549 (-)
LOC110490051 LOC106581764 coding upstream 277513 42779410 ~ 42792775 (-)
LOC110501576 LOC106605029 coding upstream 420771 42922668 ~ 42962273 (-)
G144654 NA non-coding downstream 81464 42413717 ~ 42414002 (-)
G144621 NA non-coding downstream 97316 42397901 ~ 42398150 (-)
G144609 NA non-coding downstream 106629 42388636 ~ 42388837 (-)
G144604 NA non-coding downstream 108892 42386343 ~ 42386574 (-)
G144496 NA non-coding downstream 245438 42247891 ~ 42250028 (-)
G144941 NA non-coding upstream 86661 42588558 ~ 42592604 (-)
G144968 LOC106605035 non-coding upstream 138602 42640499 ~ 42642693 (-)
G144995 NA non-coding upstream 179511 42681408 ~ 42683345 (-)
G145015 NA non-coding upstream 215837 42717734 ~ 42717959 (-)
G145019 NA non-coding upstream 218823 42720720 ~ 42720929 (-)
LOC110489860 LOC106605053 other downstream 765044 41714269 ~ 41730507 (-)
G142918 NA other downstream 1631745 40863214 ~ 40863721 (-)
LOC110489653 LOC106605072 other downstream 2254062 40224622 ~ 40298333 (-)
G141363 LOC106605077 other downstream 2729993 39763933 ~ 39765473 (-)
G140879 NA other downstream 3431048 39063862 ~ 39064418 (-)
G145010 NA other upstream 204921 42706818 ~ 42707279 (-)
G145767 NA other upstream 768820 43270717 ~ 43272516 (-)
LOC110490183 LOC106605015 other upstream 870943 43372725 ~ 43392160 (-)
LOC110490298 LOC106605170 other upstream 1274166 43776063 ~ 43783884 (-)
LOC110490352 NA other upstream 1932893 44434790 ~ 44464449 (-)

Expression


Co-expression Network