LOC110489991 (LOC106605026)


Basic Information

Item Value
gene id LOC110489991
gene name LOC106605026
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42529081 ~ 42572673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563049.2
GACTTCAGCCATTTGACCATGTGACTTTTTGTGGGTTCAGATGCTAGCTTTTGATGTTCCCGACAGTTTTAGAAAGTCAAGATTATAACTGAAACTGTATTTTGCGTTTTGGACACTAGCCACAAGTATTATATGGACTCCATTCGAGTTTCTTGTGGTGTATGACCTACAATAAAGTTATTAATCGTTTGAAATAAGCTACGACGCTACAGTGTGTTgacatattagctagctagctaacctgcTAGCTCATTGGCCAGTTTAAGGGCAAAATCAAAGAGCTACAGATGCGGCTAAAGGATCCCTTCTCCTTGAAAGCTGCCGACATGACTAAGCGGACTAACAAGCCGAGGAAGCCTCGAGATGAGGAGTCGTCGGACGAAGTTAGCGGGCTGACCTGCCAGCATGTCAGCAAGGCGGTAGACCTGAACTCAGTCAAGAAGGCAGTGACCTCGAGCATGTGGTCGATGTGTTCAGATTGCCTGAGGGAAAGGACTATGATAGATGGAGAGCCAGCCAGTGGCCACGACATCCTCGTATGCCTCAAGTGCGGCTTCCAGGGCTGTAGCCAGTCAGAGAGCCAGCACTCCACCAAGCACCACCAAACCCTCCACCCTGAGTCCCATTGTATCACCATCAGCCTCGGCACCTGGAAGGCCTGGTGTTTTGAATGTAATGAAGAGCTCTCCACTCACTGCAATAAGAAGGCTTTGGCCCAGACCCTGGACTTCCTACAAAAGCACTCTGTCAAGGCAGCCTCAGGAACAACATCGAAAATGATCAAGCTTAGAGAGGAGCCCAGCGACTATGCAGACCAGTCAAGAGGGAAGAGTCCGGTCAACAACAGCACACTGGTCCCGGTCAAAGGCATCAACAACCTAGGAAACACCTGCTTCTTTAACGCAGTTATGCAGAATCTGTCCCAGACTCACATGCTGAACGATCTGATACAGGATGTGAAGGAGAAGGGACACAAGCTGAAGATCTGCCCCCCTGCCGAGTCAAATGTGGGGGCGTTGATGGTGACTCTGCCCAGCCCAGAGCCCCTGACCTCGGCCATGTTCCTCTTCCTACACAGCATGAAGGAGTCCGGGAAGGGCCCTGTCAACCCCAAGACCCTTTTCAACCAGCTCTGCCAGAAGGCTCCACGCTTTAAGGGCTACCAGCAGCAGGACAGCCAGGAGCTGCTCCATTACCTACTGGACTCCATGAGAGTAGAGGAGACTAAGCGGATCAAAGCGGGCATTCTGAAATCCTTCAACAACCCCACGGAGAAGACTGCAGATGATGAGACCAAACGCCAAGTCAAAGCATACGGGAAGGAGGGTGTGAAGATGAACTTTGTGGATCGCATCTTTGTGGGGGAGTTGACCAACACCATCATGTGTGAGGAGTGTGAGCATATCTCCACAGTGAAGGAAGCCTTCATTGACATCTCCCTGCCCATCATTGAGGAGCGGATGTCCAAGCCGTCCAACCCGGGCAGGACTGGGAAGAGCAGTCGGGAGCAAGAAGCTCACGTCTCCCACGGTGACGAGATGCTTTCCGCAGCGCTCAATAAGAACAGCAGGAAACTTAgcggacagcagcagcagggccATAAGTCCCCTGGCTCTGTGGAAGAGAAGGGGGCAGACAGCCCCTCGGACCACCCCGAGGAGGAGTCCCCCTCCGTAATGGCCCGTGCTGCAGGAGTTTCCAAAATGGCCGCCACCAGCAGCCTATCTGATGGCAGTGAGAAAGACTCGGGCCCCCAGGACAGCAGCAATGACGCCGACAGCGAGGCCTCGGAGAGTGAGTGGACCCCACGGCACTCCTCGGGCCACAGCCATAGTGGCAGAGGGTCCACCCCTACCCAGTCTCCCACCCTGTCCGCCCTCTCCCCCAGGACCCAGCATGGTGGTGCTGTGGAGCAGCTGGTCAGTGCAGTGCATAGGTTTAACCTGGGACCTGATTCAGCGGACTCACCCTCTACACACTGTCCTGAGGACCAGGTGGAGCCCCAGCCTCAACATCCTCAACAGTCTCCTCACTCCCACCACCAGGGGGCATTCCAGGCCCTGTCCCACAGCTATACGCCCTGCTCCAAGGAGTGCTCCGTTCAGTCCTGCCTTCACCAGTTCACCTCGGTGGAGCTTCTGATGGGCAACAACAAGCTGTTGTGCGAGAGCTGCACGGACCGCCGGCAGAAACAACTGCGGAAAAGCACCTCAGCAGAGAAGAAGTCTGACAAGGTGTACACCAGCGCTCGCAAACAGATGCTGATCTCTTCGCTGCCCCCGGTGGTCACTCTGCACCTCAAACGCTTCCATCAGgcaGGGATGAACCTACGAAAAGTCAACCGTCACGTCAACTTCCCTCTCATCCTGGACCTGGCTCCATTCTGCTCGGCATCCTGCAAGAACCTGGTGGCGGGGGAGCGTGTGCTGTACAGCCTGTATGGCATCGTGGAACACAGCGGGTCGATGCGCGGGGGCCACTACACAGCGTATGTAAAGGTCCGCTCGCCCCAGAGGAGAACCGAGCAGCCACAGCGCAGAAACCTGGCAGGTCCAAGGGAAGCAAGCAGTGCTACACAGGGTCAGTGGGTGTATGTAAGTGACACCAATGTCCAGACGGTACCAGAATCCAGGGTCCTCAACTCTCAAGCCTACCTGCTGTTCTACGAGGAGATGCTGTGACTGCTAGAGCACGAAGCTACCCAACAATCGTTGGTCTCTCAGGAGACTGgggaagaggggggaaaaaaagagcGAGACCTGCTTTGGGTATACCGCTCTCTAAACTTTGACTCCCAAGAGCATGAAACATGGCAAGCACTACATGATGGGATTTGTAGGCCATCAGGGACATGCATTACATTGATGTATACTGGACTGCTCAGCATTGAAGGGTTACCACACTCTTCGTGTCTCGGTCCACTTACTGAACGTCCCCATACAGTTGCTCATACCTCTGTAGGTGAAAGAGACTGAGTGAGAAAGCGAAAGAGTGGCAGAATAGTATGTTTAATTAGCACAAATTATACAGAAAAAAAAATGctatgttatttatattttacaGCCTGCTGTGGTGAATACGAATTGTATTTTTTGTAGAACATGCGAATGTGTGACTATCATTAAATGGTGATTGCCAAAGAGTTtttggtaaaataaataatataaaatgATGGAAAACATACACAAAAGACTTAAGTGCCAAAAGAATGTGATCTCAAACTATTCCTGAAAGGAGAGGTCCATAATGTGGCAGGCCATCCGAGTGTGTTTCAGACCAATACATTACTGTGTTGGTCGGCACTGTTCTTTTCAATTCTCTCTCTACGTTTGTGCACCGGTGTGCATATTTAAATCTCTAACCACATGTTTTCAAACACATTGCGATGTTTAACAAAGGGACATTACTACATATATGATTGCCAGCTCGCCGGACAATTTCATTAGTCTTTTTATCCCATTACTTTCTGCTGTAGTTAAACTAAAGGCTGTGAATGTGTTGATCAATCTTCAGATTCAAATGTGTCTCACCATTTATGTTAATCGTTCTgcaaatatttttttgggggaatGAAATGGAGATATTTTATCTGTCGGTTGTTGGGACATTCTGGTCAAGTGAAGGATTACTATAGGTAAAGATACGGTTTGATtcattttctttcaaaacaaataAATACTCAGTGCCTACACTCTAGGATTATTACGCTTCTGCATGTTAAGAACAAATAATTACGGTGAACACATATTTGCTTACAGACAGCTTGTGTGAAATGTATATGCAAAACCATGAGAATTTGGTGTTTTTTACCACAATACTAAACCCTATATAGATATGGTGTTTATCTTCAGGTGTTCTTTTCCTTCTGAAAATGTCATTCGATTTCAATAAGGAACTCGGTACACCGTTGGGTTATGTGAAATCATATATATCGAAGAGAATAAATCTAATTTATGAAATGGGAAACCAA
>XM_021563058.2
GACTTCAGCCATTTGACCATGTGACTTTTTGTGGGTTCAGATGCTAGCTTTTGATGTTCCCGACAGTTTTAGAAAGTCAAGATTATAACTGAAACTGTATTTTGCGTTTTGGACACTAGCCACAAGTATTATATGGACTCCATTCGAGTTTCTTGTGGTGTATGACCTACAATAAAGTTATTAATCGTTTGAAATAAGCTACGACGCTACAGTGTGTTgacatattagctagctagctaacctgcTAGCTCATTGGCCAGTTTAAGGGCAAAATCAAAGAGCTACAGATGCGGCTAAAGGATCCCTTCTCCTTGAAAGCTGCCGACATGACTAAGCGGACTAACAAGCCGAGGAAGCCTCGAGATGAGGAGTCGTCGGACGAAGTTAGCGGGCTGACCTGCCAGCATGTCAGCAAGGCGGTAGACCTGAACTCAGTCAAGAAGGCAGTGACCTCGAGCATGTGGTCGATGTGTTCAGATTGCCTGAGGGAAAGGACTATGATAGATGGAGAGCCAGCCAGTGGCCACGACATCCTCGTATGCCTCAAGTGCGGCTTCCAGGGCTGTAGCCAGTCAGAGAGCCAGCACTCCACCAAGCACCACCAAACCCTCCACCCTGAGTCCCATTGTATCACCATCAGCCTCGGCACCTGGAAGGCCTGGTGTTTTGAATGTAATGAAGAGCTCTCCACTCACTGCAATAAGAAGGCTTTGGCCCAGACCCTGGACTTCCTACAAAAGCACTCTGTCAAGGCAGCCTCAGGAACAACATCGAAAATGATCAAGCTTAGAGAGGAGCCCAGCGACTATGCAGACCAGTCAAGAGGGAAGAGTCCGGTCAACAACAGCACACTGGTCCCGGTCAAAGGCATCAACAACCTAGGAAACACCTGCTTCTTTAACGCAGTTATGCAGAATCTGTCCCAGACTCACATGCTGAACGATCTGATACAGGATGTGAAGGAGAAGGGACACAAGCTGAAGATCTGCCCCCCTGCCGAGTCAAATGTGGGGGCGTTGATGGTGACTCTGCCCAGCCCAGAGCCCCTGACCTCGGCCATGTTCCTCTTCCTACACAGCATGAAGGAGTCCGGGAAGGGCCCTGTCAACCCCAAGACCCTTTTCAACCAGCTCTGCCAGAAGGCTCCACGCTTTAAGGGCTACCAGCAGCAGGACAGCCAGGAGCTGCTCCATTACCTACTGGACTCCATGAGAGTAGAGGAGACTAAGCGGATCAAAGCGGGCATTCTGAAATCCTTCAACAACCCCACGGAGAAGACTGCAGATGATGAGACCAAACGCCAAGTCAAAGCATACGGGAAGGAGGGTGTGAAGATGAACTTTGTGGATCGCATCTTTGTGGGGGAGTTGACCAACACCATCATGTGTGAGGAGTGTGAGCATATCTCCACAGTGAAGGAAGCCTTCATTGACATCTCCCTGCCCATCATTGAGGAGCGGATGTCCAAGCCGTCCAACCCGGGCAGGACTGGGAAGAGCAGTCGGGAGCAAGAAGCTCACGTCTCCCACGGTGACGAGATGCTTTCCGCAGCGCTCAATAAGAACAGCAGGAAACTTAgcggacagcagcagggccATAAGTCCCCTGGCTCTGTGGAAGAGAAGGGGGCAGACAGCCCCTCGGACCACCCCGAGGAGGAGTCCCCCTCCGTAATGGCCCGTGCTGCAGGAGTTTCCAAAATGGCCGCCACCAGCAGCCTATCTGATGGCAGTGAGAAAGACTCGGGCCCCCAGGACAGCAGCAATGACGCCGACAGCGAGGCCTCGGAGAGTGAGTGGACCCCACGGCACTCCTCGGGCCACAGCCATAGTGGCAGAGGGTCCACCCCTACCCAGTCTCCCACCCTGTCCGCCCTCTCCCCCAGGACCCAGCATGGTGGTGCTGTGGAGCAGCTGGTCAGTGCAGTGCATAGGTTTAACCTGGGACCTGATTCAGCGGACTCACCCTCTACACACTGTCCTGAGGACCAGGTGGAGCCCCAGCCTCAACATCCTCAACAGTCTCCTCACTCCCACCACCAGGGGGCATTCCAGGCCCTGTCCCACAGCTATACGCCCTGCTCCAAGGAGTGCTCCGTTCAGTCCTGCCTTCACCAGTTCACCTCGGTGGAGCTTCTGATGGGCAACAACAAGCTGTTGTGCGAGAGCTGCACGGACCGCCGGCAGAAACAACTGCGGAAAAGCACCTCAGCAGAGAAGAAGTCTGACAAGGTGTACACCAGCGCTCGCAAACAGATGCTGATCTCTTCGCTGCCCCCGGTGGTCACTCTGCACCTCAAACGCTTCCATCAGgcaGGGATGAACCTACGAAAAGTCAACCGTCACGTCAACTTCCCTCTCATCCTGGACCTGGCTCCATTCTGCTCGGCATCCTGCAAGAACCTGGTGGCGGGGGAGCGTGTGCTGTACAGCCTGTATGGCATCGTGGAACACAGCGGGTCGATGCGCGGGGGCCACTACACAGCGTATGTAAAGGTCCGCTCGCCCCAGAGGAGAACCGAGCAGCCACAGCGCAGAAACCTGGCAGGTCCAAGGGAAGCAAGCAGTGCTACACAGGGTCAGTGGGTGTATGTAAGTGACACCAATGTCCAGACGGTACCAGAATCCAGGGTCCTCAACTCTCAAGCCTACCTGCTGTTCTACGAGGAGATGCTGTGACTGCTAGAGCACGAAGCTACCCAACAATCGTTGGTCTCTCAGGAGACTGgggaagaggggggaaaaaaagagcGAGACCTGCTTTGGGTATACCGCTCTCTAAACTTTGACTCCCAAGAGCATGAAACATGGCAAGCACTACATGATGGGATTTGTAGGCCATCAGGGACATGCATTACATTGATGTATACTGGACTGCTCAGCATTGAAGGGTTACCACACTCTTCGTGTCTCGGTCCACTTACTGAACGTCCCCATACAGTTGCTCATACCTCTGTAGGTGAAAGAGACTGAGTGAGAAAGCGAAAGAGTGGCAGAATAGTATGTTTAATTAGCACAAATTATACAGAAAAAAAAATGctatgttatttatattttacaGCCTGCTGTGGTGAATACGAATTGTATTTTTTGTAGAACATGCGAATGTGTGACTATCATTAAATGGTGATTGCCAAAGAGTTtttggtaaaataaataatataaaatgATGGAAAACATACACAAAAGACTTAAGTGCCAAAAGAATGTGATCTCAAACTATTCCTGAAAGGAGAGGTCCATAATGTGGCAGGCCATCCGAGTGTGTTTCAGACCAATACATTACTGTGTTGGTCGGCACTGTTCTTTTCAATTCTCTCTCTACGTTTGTGCACCGGTGTGCATATTTAAATCTCTAACCACATGTTTTCAAACACATTGCGATGTTTAACAAAGGGACATTACTACATATATGATTGCCAGCTCGCCGGACAATTTCATTAGTCTTTTTATCCCATTACTTTCTGCTGTAGTTAAACTAAAGGCTGTGAATGTGTTGATCAATCTTCAGATTCAAATGTGTCTCACCATTTATGTTAATCGTTCTgcaaatatttttttgggggaatGAAATGGAGATATTTTATCTGTCGGTTGTTGGGACATTCTGGTCAAGTGAAGGATTACTATAGGTAAAGATACGGTTTGATtcattttctttcaaaacaaataAATACTCAGTGCCTACACTCTAGGATTATTACGCTTCTGCATGTTAAGAACAAATAATTACGGTGAACACATATTTGCTTACAGACAGCTTGTGTGAAATGTATATGCAAAACCATGAGAATTTGGTGTTTTTTACCACAATACTAAACCCTATATAGATATGGTGTTTATCTTCAGGTGTTCTTTTCCTTCTGAAAATGTCATTCGATTTCAATAAGGAACTCGGTACACCGTTGGGTTATGTGAAATCATATATATCGAAGAGAATAAATCTAATTTATGAAATGGGAAACCAA

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 45-like isoform X2

GO: NA

KEGG:

id description
K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563049.2 False 3970 mRNA 0.49 18 42529081 42572673
XM_021563058.2 True 3967 mRNA 0.49 18 42529081 42572673

Neighbor

gene id symbol gene type direction distance location
LOC110489963 LOC106583951 coding upstream 145124 42251937 ~ 42383957 (+)
LOC110489919 LOC106605045 coding upstream 311306 42139048 ~ 42220203 (+)
LOC110489908 LOC106605043 coding upstream 387336 42100290 ~ 42141745 (+)
LOC110489918 NA coding upstream 437008 42067004 ~ 42092073 (+)
LOC110489902 LOC106605050 coding upstream 489238 42037500 ~ 42039843 (+)
LOC110489996 pnisr coding downstream 9686 42582359 ~ 42592552 (+)
LOC110490015 LOC106605038 coding downstream 21259 42593932 ~ 42616488 (+)
LOC110490022 LOC106605035 coding downstream 45029 42617702 ~ 42642160 (+)
LOC110490029 LOC106605030 coding downstream 91751 42664424 ~ 42683349 (+)
LOC110533774 NA coding downstream 303551 42876224 ~ 42877363 (+)
G144706 NA non-coding upstream 42649 42483841 ~ 42486432 (+)
G144634 NA non-coding upstream 123960 42404877 ~ 42405121 (+)
G144629 NA non-coding upstream 126837 42401898 ~ 42402244 (+)
G144176 NA non-coding upstream 143409 42385198 ~ 42385672 (+)
G144731 NA non-coding downstream 69530 42642203 ~ 42643938 (+)
G144812 NA non-coding downstream 159257 42731930 ~ 42732135 (+)
G145043 NA non-coding downstream 188308 42760981 ~ 42761299 (+)
G145044 NA non-coding downstream 189528 42762201 ~ 42762510 (+)
G145045 NA non-coding downstream 193433 42766106 ~ 42766418 (+)
G143938 LOC106605049 other upstream 559764 41968374 ~ 41969317 (+)
LOC110489834 eny2 other upstream 987490 41539240 ~ 41541654 (+)
G139179 NA other upstream 4477337 38051359 ~ 38051744 (+)
G139101 NA other upstream 4585069 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 4588367 37919735 ~ 37940714 (+)
G146054 LOC100136012 other downstream 1158199 43730872 ~ 43731218 (+)
G146091 NA other downstream 1196034 43768707 ~ 43769162 (+)
G146114 NA other downstream 1226731 43799404 ~ 43799853 (+)
G146165 NA other downstream 1313923 43886596 ~ 43889609 (+)
G146226 NA other downstream 1424107 43996780 ~ 43997065 (+)

Expression


Co-expression Network