LOC110490015 (LOC106605038)


Basic Information

Item Value
gene id LOC110490015
gene name LOC106605038
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42593932 ~ 42616488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948835.1
GCTCGCTTGCAGATATGGGGAGAACGTGAACGTCAGGTCTtcccagtatgaaaatgtgatgcaaggGGATTCGCTCTGCCTCCAAGACCACTGTGGACCCAAATGAGGTGAAGAGGTTCCAGCTTCTCGCCAACAAGTGGTGGAATGAGCAGGGAGACTTCGCAGCCCTCCACTCAATGAATGACCTCAGGGTGCCTTTCATacgGGATAATCTGTTGAACGCACATGGCGGGCGGCGCCCGGGAAAACCACTGGCAGGGCTCAGAATACTGGACGTAGGCTGTGGAGGGGGGTTGCTCACTgagCCCTTGGGTAGACTGGGGGCAGATGTACTAGGCATTGACCCGGTGGCAGACAGTATTGGGACAGCGGAGGTACATGCGTGGCATGATCCAGACCTGCGTGGCAATGTGCGCTACCGTGCCATCACTCTGGAGGAGCTCTCTGAAAAGGGGGGGCAGGGAGCGGGGCAGTTTGATGCAGTGGTGGCCTCGGAGGTGGTGGAACATCTGGCTGACCTGGAAACCTTCACACTCTGCTGCAACCAGGTGCTCAAGCCAGGAGGCTCCCTCTtcatcaccaccatcaacaaGACCCAGCTGTCGTACGCCCTGGCCATCGTGGCAGCAGAGGAGGTGCTACGCATCGTGCCCAGCGGGACCCATGACTGGGACAAGTTTGTCAGCCCCATGGAGCTGGAGCGCCTGCTAGAGTCCAATGGTTTCCATGTGGAGTCTATCCGAGGGATGCTGTATAACCCTCTGTCAGGGGCCTGGAGCTGGACAGAGAGCACCAGCATCAACTACGCCCTGCACGCGGTCAAACTCGAGGAGGAACCGAACCTTGACGAGGACGACCCCGAAGACCCCACCGTGATAGTGGCCCAAGCTAAGGCCAGACGCTGGTACAACTGACTTGACCGTGGGAGAGAGTTGTCATAAGTGGTCAGCTGCAACACAGATTCTCTGATCTCTGAAGGGAAAGGCAATGGACCTGAAAAACACAAAGCATTTGAGAAAGTTATAGTTCAGTGCTTGATACAAATACATAGTGTTTTCTTTCAGCCAGGCCATGATTATTCTGTGAGTTCACAGCATAATGAGTCCCTCTGAATTGCGTGAACTGTTTAAGGTTTCAAGGCTTGTCATTACAATGTCATCTGTTATGGTAGAAGTGTTCATCACCATGATTGACATCTCAGGTCTCTGATTTACTATTGAGCAGGATGTTTTCTTCAAATACAGtcacaatgtcttcatcaaaatCCATTGTATGGATATTGTTTGTCTTGACATGCTTATTATATCCTCCATTAGGAAATGAAATGGTTTCCTTTAATATTCTCTGATCTGACGATTATTCCTCTCTAGTGTCATTTCAACAGTGTGAAGATATAGTCCAAATCAGTGATGTGGTGTTTCAGTTGTAAATCCTGTGCTGAAATTCAGGATCTGAGGGCTTTTTATATTAGAAAAGTCTTTGGATTTTCTGTCCACATATTTCCTGCTAATCCCTGAAATATAGGAGGGGGAGATCAGGCTGCTTTCGGCCttttcttgctctctttctctctactctgtaGCCATGGTGATTTTGAGATTATAATTGGCTTCTGGCTGAACTATTACATAAGACCCAAACAAGCCTCCAACTAAAATCATGCTTGCAAGTTATTATTCAAAACAGACACAATCATTGGCCGGATGTTTCAAGAAGTGCAGTCACAGTAGTGTATTTGATCCTCCACAGATGGACTGTGTGTTTCTGTCATATTTTTCCATTCGCCCTTATATGTAGACAAGGCCCAGGACTATGTGCTGAAATGTAAAAaggtatatgtttttttttaccctcatGACACAAATGTTGTTATTCTAGTCACATGCCCCACTGGCTTCTAACAAATTGCATTTAAAAGCTGCTCATTTTATGTCCAACTTGGATTATGGGTCGATGTAGGCTGTAGAACAGTCCAGGGCTGGTTTTCAGTCGCAAACTTAAACAGAATAAGATTGCTCTGCCATAAATTTAGCAGACCAGGATGAACATGTACAATTTGTCCAATAGACTGTAGTCTACCTCCACTGACGTGAGCGACGCTGGAGTGCACACGCTTGCAGTATGGCTGTGCAGTAAGGATATTGGATGTATAAGCAGGAAGCTATAATAAACGGATTATTGAATACGA
>XM_036948827.1
tatacccacgtgggtgttTGAAatatgaactgaggtccacacgcCACtctagttggtggtggtaatgcaccttaaaattGGTTGCCAACCGTCCAAAGAAGAAGCTTGGAGGACAGATTACTAGAAAAAgtggtttacccttttatctgtggcttaattgtcggagtagaggatcttgtacatttcagGGTTTTGTACCCGCTGTTCAACAAGTGTGGTGAATGGCACTCCTACTTCAACTCGGACTACAGTCAGCTGGACTTCAGTATGTAAACATCACACGCAGTTTCTGGAGCGTCGCTCTCAAATGGGTTTCGCGCATGTGAGGATTCGCTCTGCCTCCAAGACCACTGTGGACCCAAATGAGGTGAAGAGGTTCCAGCTTCTCGCCAACAAGTGGTGGAATGAGCAGGGAGACTTCGCAGCCCTCCACTCAATGAATGACCTCAGGGTGCCTTTCATacgGGATAATCTGTTGAACGCACATGGCGGGCGGCGCCCGGGAAAACCACTGGCAGGGCTCAGAATACTGGACGTAGGCTGTGGAGGGGGGTTGCTCACTgagCCCTTGGGTAGACTGGGGGCAGATGTACTAGGCATTGACCCGGTGGCAGACAGTATTGGGACAGCGGAGGTACATGCGTGGCATGATCCAGACCTGCGTGGCAATGTGCGCTACCGTGCCATCACTCTGGAGGAGCTCTCTGAAAAGGGGGGGCAGGGAGCGGGGCAGTTTGATGCAGTGGTGGCCTCGGAGGTGGTGGAACATCTGGCTGACCTGGAAACCTTCACACTCTGCTGCAACCAGGTGCTCAAGCCAGGAGGCTCCCTCTtcatcaccaccatcaacaaGACCCAGCTGTCGTACGCCCTGGCCATCGTGGCAGCAGAGGAGGTGCTACGCATCGTGCCCAGCGGGACCCATGACTGGGACAAGTTTGTCAGCCCCATGGAGCTGGAGCGCCTGCTAGAGTCCAATGGTTTCCATGTGGAGTCTATCCGAGGGATGCTGTATAACCCTCTGTCAGGGGCCTGGAGCTGGACAGAGAGCACCAGCATCAACTACGCCCTGCACGCGGTCAAACTCGAGGAGGAACCGAACCTTGACGAGGACGACCCCGAAGACCCCACCGTGATAGTGGCCCAAGCTAAGGCCAGACGCTGGTACAACTGACTTGACCGTGGGAGAGAGTTGTCATAAGTGGTCAGCTGCAACACAGATTCTCTGATCTCTGAAGGGAAAGGCAATGGACCTGAAAAACACAAAGCATTTGAGAAAGTTATAGTTCAGTGCTTGATACAAATACATAGTGTTTTCTTTCAGCCAGGCCATGATTATTCTGTGAGTTCACAGCATAATGAGTCCCTCTGAATTGCGTGAACTGTTTAAGGTTTCAAGGCTTGTCATTACAATGTCATCTGTTATGGTAGAAGTGTTCATCACCATGATTGACATCTCAGGTCTCTGATTTACTATTGAGCAGGATGTTTTCTTCAAATACAGtcacaatgtcttcatcaaaatCCATTGTATGGATATTGTTTGTCTTGACATGCTTATTATATCCTCCATTAGGAAATGAAATGGTTTCCTTTAATATTCTCTGATCTGACGATTATTCCTCTCTAGTGTCATTTCAACAGTGTGAAGATATAGTCCAAATCAGTGATGTGGTGTTTCAGTTGTAAATCCTGTGCTGAAATTCAGGATCTGAGGGCTTTTTATATTAGAAAAGTCTTTGGATTTTCTGTCCACATATTTCCTGCTAATCCCTGAAATATAGGAGGGGGAGATCAGGCTGCTTTCGGCCttttcttgctctctttctctctactctgtaGCCATGGTGATTTTGAGATTATAATTGGCTTCTGGCTGAACTATTACATAAGACCCAAACAAGCCTCCAACTAAAATCATGCTTGCAAGTTATTATTCAAAACAGACACAATCATTGGCCGGATGTTTCAAGAAGTGCAGTCACAGTAGTGTATTTGATCCTCCACAGATGGACTGTGTGTTTCTGTCATATTTTTCCATTCGCCCTTATATGTAGACAAGGCCCAGGACTATGTGCTGAAATGTAAAAaggtatatgtttttttttaccctcatGACACAAATGTTGTTATTCTAGTCACATGCCCCACTGGCTTCTAACAAATTGCATTTAAAAGCTGCTCATTTTATGTCCAACTTGGATTATGGGTCGATGTAGGCTGTAGAACAGTCCAGGGCTGGTTTTCAGTCGCAAACTTAAACAGAATAAGATTGCTCTGCCATAAATTTAGCAGACCAGGATGAACATGTACAATTTGTCCAATAGACTGTAGTCTACCTCCACTGACGTGAGCGACGCTGGAGTGCACACGCTTGCAGTATGGCTGTGCAGTAAGGATATTGGATGTATAAGCAGGAAGCTATAATAAACGGATTATTGAATACGA
>XM_021563096.2
taatatagttggttcagagttcgttaTGCGCGCGATGGTGGCTTTCTGTACACCTGCTTCGCTggggtgctgtttctcctagaagtttccacttcacaataacagcacttacagttgaccggagcagctctagcggggcagaaatttgatgaactgacttgttggaaaggagattgcatggctgtgtgtttgaTTGTATACACAATGTCAGcgacgggtgtggctgaaatagccgaatccactcgtATATACAAATGTATGTTCAACACCAATCATCAAAATGTATAACCCCCACCTTACAACAGGCTACGTTACAGTTGTTTAATCGTTGATATATTACTGAACTCAGTGTTGGCTTAATTGAGTATTTATACACTAATAATTTGGGACTGGAGTAGATTTAGCCAGGGAACCAGTAGCCAGTAGGAACTTTCTATGCACAGCAGTGTTTCCACTCGAACAGTAAGAGAATGAGTACACCACGGTCACATTGACCTGTCTACCGAACACATATAAATGTAAGAAACAGACATGTATTCAAAGAAGTTTGGACGTCTCATCTTAGGGTTTTGTACCCGCTGTTCAACAAGTGTGGTGAATGGCACTCCTACTTCAACTCGGACTACAGTCAGCTGGACTTCAGTATGTAAACATCACACGCAGTTTCTGGAGCGTCGCTCTCAAATGGGTTTCGCGCATGTGAGGATTCGCTCTGCCTCCAAGACCACTGTGGACCCAAATGAGGTGAAGAGGTTCCAGCTTCTCGCCAACAAGTGGTGGAATGAGCAGGGAGACTTCGCAGCCCTCCACTCAATGAATGACCTCAGGGTGCCTTTCATacgGGATAATCTGTTGAACGCACATGGCGGGCGGCGCCCGGGAAAACCACTGGCAGGGCTCAGAATACTGGACGTAGGCTGTGGAGGGGGGTTGCTCACTgagCCCTTGGGTAGACTGGGGGCAGATGTACTAGGCATTGACCCGGTGGCAGACAGTATTGGGACAGCGGAGGTACATGCGTGGCATGATCCAGACCTGCGTGGCAATGTGCGCTACCGTGCCATCACTCTGGAGGAGCTCTCTGAAAAGGGGGGGCAGGGAGCGGGGCAGTTTGATGCAGTGGTGGCCTCGGAGGTGGTGGAACATCTGGCTGACCTGGAAACCTTCACACTCTGCTGCAACCAGGTGCTCAAGCCAGGAGGCTCCCTCTtcatcaccaccatcaacaaGACCCAGCTGTCGTACGCCCTGGCCATCGTGGCAGCAGAGGAGGTGCTACGCATCGTGCCCAGCGGGACCCATGACTGGGACAAGTTTGTCAGCCCCATGGAGCTGGAGCGCCTGCTAGAGTCCAATGGTTTCCATGTGGAGTCTATCCGAGGGATGCTGTATAACCCTCTGTCAGGGGCCTGGAGCTGGACAGAGAGCACCAGCATCAACTACGCCCTGCACGCGGTCAAACTCGAGGAGGAACCGAACCTTGACGAGGACGACCCCGAAGACCCCACCGTGATAGTGGCCCAAGCTAAGGCCAGACGCTGGTACAACTGACTTGACCGTGGGAGAGAGTTGTCATAAGTGGTCAGCTGCAACACAGATTCTCTGATCTCTGAAGGGAAAGGCAATGGACCTGAAAAACACAAAGCATTTGAGAAAGTTATAGTTCAGTGCTTGATACAAATACATAGTGTTTTCTTTCAGCCAGGCCATGATTATTCTGTGAGTTCACAGCATAATGAGTCCCTCTGAATTGCGTGAACTGTTTAAGGTTTCAAGGCTTGTCATTACAATGTCATCTGTTATGGTAGAAGTGTTCATCACCATGATTGACATCTCAGGTCTCTGATTTACTATTGAGCAGGATGTTTTCTTCAAATACAGtcacaatgtcttcatcaaaatCCATTGTATGGATATTGTTTGTCTTGACATGCTTATTATATCCTCCATTAGGAAATGAAATGGTTTCCTTTAATATTCTCTGATCTGACGATTATTCCTCTCTAGTGTCATTTCAACAGTGTGAAGATATAGTCCAAATCAGTGATGTGGTGTTTCAGTTGTAAATCCTGTGCTGAAATTCAGGATCTGAGGGCTTTTTATATTAGAAAAGTCTTTGGATTTTCTGTCCACATATTTCCTGCTAATCCCTGAAATATAGGAGGGGGAGATCAGGCTGCTTTCGGCCttttcttgctctctttctctctactctgtaGCCATGGTGATTTTGAGATTATAATTGGCTTCTGGCTGAACTATTACATAAGACCCAAACAAGCCTCCAACTAAAATCATGCTTGCAAGTTATTATTCAAAACAGACACAATCATTGGCCGGATGTTTCAAGAAGTGCAGTCACAGTAGTGTATTTGATCCTCCACAGATGGACTGTGTGTTTCTGTCATATTTTTCCATTCGCCCTTATATGTAGACAAGGCCCAGGACTATGTGCTGAAATGTAAAAaggtatatgtttttttttaccctcatGACACAAATGTTGTTATTCTAGTCACATGCCCCACTGGCTTCTAACAAATTGCATTTAAAAGCTGCTCATTTTATGTCCAACTTGGATTATGGGTCGATGTAGGCTGTAGAACAGTCCAGGGCTGGTTTTCAGTCGCAAACTTAAACAGAATAAGATTGCTCTGCCATAAATTTAGCAGACCAGGATGAACATGTACAATTTGTCCAATAGACTGTAGTCTACCTCCACTGACGTGAGCGACGCTGGAGTGCACACGCTTGCAGTATGGCTGTGCAGTAAGGATATTGGATGTATAAGCAGGAAGCTATAATAAACGGATTATTGAATACGA
>XM_036948819.1
gaatgacttctattttagcccttggcaacccAGATGCTCATTGGTgtgcaagcagtGATTCGCTCTGCCTCCAAGACCACTGTGGACCCAAATGAGGTGAAGAGGTTCCAGCTTCTCGCCAACAAGTGGTGGAATGAGCAGGGAGACTTCGCAGCCCTCCACTCAATGAATGACCTCAGGGTGCCTTTCATacgGGATAATCTGTTGAACGCACATGGCGGGCGGCGCCCGGGAAAACCACTGGCAGGGCTCAGAATACTGGACGTAGGCTGTGGAGGGGGGTTGCTCACTgagCCCTTGGGTAGACTGGGGGCAGATGTACTAGGCATTGACCCGGTGGCAGACAGTATTGGGACAGCGGAGGTACATGCGTGGCATGATCCAGACCTGCGTGGCAATGTGCGCTACCGTGCCATCACTCTGGAGGAGCTCTCTGAAAAGGGGGGGCAGGGAGCGGGGCAGTTTGATGCAGTGGTGGCCTCGGAGGTGGTGGAACATCTGGCTGACCTGGAAACCTTCACACTCTGCTGCAACCAGGTGCTCAAGCCAGGAGGCTCCCTCTtcatcaccaccatcaacaaGACCCAGCTGTCGTACGCCCTGGCCATCGTGGCAGCAGAGGAGGTGCTACGCATCGTGCCCAGCGGGACCCATGACTGGGACAAGTTTGTCAGCCCCATGGAGCTGGAGCGCCTGCTAGAGTCCAATGGTTTCCATGTGGAGTCTATCCGAGGGATGCTGTATAACCCTCTGTCAGGGGCCTGGAGCTGGACAGAGAGCACCAGCATCAACTACGCCCTGCACGCGGTCAAACTCGAGGAGGAACCGAACCTTGACGAGGACGACCCCGAAGACCCCACCGTGATAGTGGCCCAAGCTAAGGCCAGACGCTGGTACAACTGACTTGACCGTGGGAGAGAGTTGTCATAAGTGGTCAGCTGCAACACAGATTCTCTGATCTCTGAAGGGAAAGGCAATGGACCTGAAAAACACAAAGCATTTGAGAAAGTTATAGTTCAGTGCTTGATACAAATACATAGTGTTTTCTTTCAGCCAGGCCATGATTATTCTGTGAGTTCACAGCATAATGAGTCCCTCTGAATTGCGTGAACTGTTTAAGGTTTCAAGGCTTGTCATTACAATGTCATCTGTTATGGTAGAAGTGTTCATCACCATGATTGACATCTCAGGTCTCTGATTTACTATTGAGCAGGATGTTTTCTTCAAATACAGtcacaatgtcttcatcaaaatCCATTGTATGGATATTGTTTGTCTTGACATGCTTATTATATCCTCCATTAGGAAATGAAATGGTTTCCTTTAATATTCTCTGATCTGACGATTATTCCTCTCTAGTGTCATTTCAACAGTGTGAAGATATAGTCCAAATCAGTGATGTGGTGTTTCAGTTGTAAATCCTGTGCTGAAATTCAGGATCTGAGGGCTTTTTATATTAGAAAAGTCTTTGGATTTTCTGTCCACATATTTCCTGCTAATCCCTGAAATATAGGAGGGGGAGATCAGGCTGCTTTCGGCCttttcttgctctctttctctctactctgtaGCCATGGTGATTTTGAGATTATAATTGGCTTCTGGCTGAACTATTACATAAGACCCAAACAAGCCTCCAACTAAAATCATGCTTGCAAGTTATTATTCAAAACAGACACAATCATTGGCCGGATGTTTCAAGAAGTGCAGTCACAGTAGTGTATTTGATCCTCCACAGATGGACTGTGTGTTTCTGTCATATTTTTCCATTCGCCCTTATATGTAGACAAGGCCCAGGACTATGTGCTGAAATGTAAAAaggtatatgtttttttttaccctcatGACACAAATGTTGTTATTCTAGTCACATGCCCCACTGGCTTCTAACAAATTGCATTTAAAAGCTGCTCATTTTATGTCCAACTTGGATTATGGGTCGATGTAGGCTGTAGAACAGTCCAGGGCTGGTTTTCAGTCGCAAACTTAAACAGAATAAGATTGCTCTGCCATAAATTTAGCAGACCAGGATGAACATGTACAATTTGTCCAATAGACTGTAGTCTACCTCCACTGACGTGAGCGACGCTGGAGTGCACACGCTTGCAGTATGGCTGTGCAGTAAGGATATTGGATGTATAAGCAGGAAGCTATAATAAACGGATTATTGAATACGA

Function

NR:

description
ubiquinone biosynthesis O-methyltransferase, mitochondrial-like

GO: NA

KEGG:

id description
K00591 COQ3; polyprenyldihydroxybenzoate methyltransferase / 3-demethylubiquinol 3-O-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948835.1 False 2188 mRNA 0.47 6 42593932 42616488
XM_036948827.1 False 2448 mRNA 0.47 7 42594774 42616488
XM_021563096.2 False 2825 mRNA 0.46 6 42595062 42616488
XM_036948819.1 True 2177 mRNA 0.47 6 42596769 42616488

Neighbor

gene id symbol gene type direction distance location
LOC110489996 pnisr coding upstream 1380 42582359 ~ 42592552 (+)
LOC110489991 LOC106605026 coding upstream 21259 42529081 ~ 42572673 (+)
LOC110489963 LOC106583951 coding upstream 209975 42251937 ~ 42383957 (+)
LOC110489919 LOC106605045 coding upstream 376157 42139048 ~ 42220203 (+)
LOC110489908 LOC106605043 coding upstream 452187 42100290 ~ 42141745 (+)
LOC110490022 LOC106605035 coding downstream 1214 42617702 ~ 42642160 (+)
LOC110490029 LOC106605030 coding downstream 47936 42664424 ~ 42683349 (+)
LOC110533774 NA coding downstream 259736 42876224 ~ 42877363 (+)
LOC110501569 mms22l coding downstream 261725 42878213 ~ 42910743 (+)
LOC110490056 LOC106605039 coding downstream 354527 42971015 ~ 42975154 (+)
G144706 NA non-coding upstream 107500 42483841 ~ 42486432 (+)
G144634 NA non-coding upstream 188811 42404877 ~ 42405121 (+)
G144629 NA non-coding upstream 191688 42401898 ~ 42402244 (+)
G144176 NA non-coding upstream 208260 42385198 ~ 42385672 (+)
G144731 NA non-coding downstream 25715 42642203 ~ 42643938 (+)
G144812 NA non-coding downstream 115442 42731930 ~ 42732135 (+)
G145043 NA non-coding downstream 144493 42760981 ~ 42761299 (+)
G145044 NA non-coding downstream 145713 42762201 ~ 42762510 (+)
G145045 NA non-coding downstream 149618 42766106 ~ 42766418 (+)
G144661 NA other upstream 27902 42510330 ~ 42566030 (+)
G143938 LOC106605049 other upstream 624615 41968374 ~ 41969317 (+)
LOC110489834 eny2 other upstream 1052341 41539240 ~ 41541654 (+)
G139179 NA other upstream 4542188 38051359 ~ 38051744 (+)
G139101 NA other upstream 4649920 37943742 ~ 37944012 (+)
G146054 LOC100136012 other downstream 1114384 43730872 ~ 43731218 (+)
G146091 NA other downstream 1152219 43768707 ~ 43769162 (+)
G146114 NA other downstream 1182916 43799404 ~ 43799853 (+)
G146165 NA other downstream 1270108 43886596 ~ 43889609 (+)
G146226 NA other downstream 1380292 43996780 ~ 43997065 (+)

Expression


Co-expression Network