LOC110490029 (LOC106605030)



Basic Information


Item Value
gene id LOC110490029
gene name LOC106605030
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42664424 ~ 42683349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021563119.2
TAATTCCCACAATGCTCTGCTTCATAGGCATTAATACTCGATGTAAACAGAAGTGAGAACAAAAGTCTGCCGTTTTAGGATTTCTGTTAAAATAATCTCAGATATGGAACAAAGACAGTCTTGCTATATGAATGCTTAGTTTGATCTACTGTTAACGTCCTGTATGTGGCTGGGCCTGTAGCCTGCGCTCTGGGGCCTCTTCCCACAAGCCACACCCAGCCCACTGCTCCCCTGACCCACTGTTCCCTATGCTAACCCTTCTGAGCATGTTTTACTATATCTGTCTGCGGCGCCGGTCCAGGAGCGGAACTCGGGGTGAGGCGCTGACCAGCAGGCGGGCCGTGGAGTCAGGCCAGCGGGCCACCCTGCCCATCAGCGTGGAGGTGGAACAGTATGCCAAAGAGGTGCTGGACTTCAGCTCCCACTACGGCAGTGAGAACAGCATGTCGTACACCATGTGGAACCTGGCCGGCATGCCCAACGTCTACCCCAGCTCTGGGGACTTCACCCAGACGGCCGTGTTCAGGGCCTACGGGACGTGGTGGGAGCAGTGTGCCAGCGCACCTCTGCCGTTCCGCCGCACGCCCAAGGCCTTCCATAGCCAGGACTACATCGAGCTGGCCTTCGAGGAGCCCGTCTACCCCACAGCTGTGGAGGTGCTGGAGACCTACCACCCGGGGGCCATTGTCCAGATCATGGCCTGCTCCCTCAACCCCTTCTCTCAGAACCCTCCCACAGACGTCAGGTGGGAGGTGTTGTGGGCTGAGGAGCCCACCAATGTGCTGACCCCCCAGGCCAGGCAGTTCTCCCCCAGCATCAAGCAGCTGAACTTCCCCACCAACTTGATCCGCGTGGAGGTCAACAGCTCCCTGCTAAAGTACTACACAGAGCTGGATGCCGTCGTCCTGCGTGGCCAGAAAGAGAGGCCCATCCTCTCCCTTTATAAGATGCCCAGGATCGACATCTGTGACCTGAGTGACAGTGATGAGGAGCTGTCTGACCCGGGAGCCTCCTTCCGACAGGCCGGGGATGGCAAGCACATTAACCTGGGGAATGGATACTTCGATAAACTGCCCTACGAGTTGATCCAGCTGATAGTCAGCCACCTGACCCTGCCCGACCTATGTCGCCTAACCCAGACCTGTAAGCTACTCCACCAGCACTGCTGTGACCCCCTCCAGTACATCCAGCTGAGCCTGCAGCCATACTGGGCTCGCCTCAGTGACACCTCCCTGGGCCACCTGCAGGGCCGCTGCACCCTGCTCCAGAGACTCAACCTCTCCTGGACCGGCAACCGCGGAGCCCTCACCCTCACTGGCTTCAGCAGctTCATGAAGGCATGTGGCGGGAGCCTGGTGTGTCTGGAGCTGTCGTGTTGTCACTTCCTGAGTGAACCGTGTCTAGAGGTCATCTCCCAGACGTGTCCCGGGCTGCAGGAGCTCAACCTGTCCTCGTGCGACCGCCTCCACCCCCAGGCCTTTACACACATCTCCAAGCTCACCCAACTGCGCCGGCTAGTGCTCTACCGCACAAAGatagagCAAACAGCCATGTTGAGCATCCTAACATTCTGCATTGAGCTGAGACACCTCAACCTGGGGAGCTGTGTGATGATAGACGACTATGACGTGGTGGCCAGCATGCTGGCTGTCCGCTGCCGCTCACTGCGCTCCCTGGACCTGTGGCGCTGCAGAAACCTGACGGAGCGCGGCCTGGCTGAGCTGGCTGCAGGGTGCAGACTACTGGAGGAGTTGGACCTGGGCTGGTGCTCCACACTGCAGAGCAGCTCGGGCTGCTTCCAGCACCTGGCTCGCAACCTGCCGTGCCTGAGGAAGCTCTTCCTCACCGCCAACCGCACCGTGTGCGACTCGGACATTGAGGAGTTGGCTGCCAACTGCCCCGCACTGCAGCACCTCGACATATTGGGCACCCGGATGGTAAGCTCCTCTTCCCTGAGGAAGCTGCTGCAGGCGTGTCCTAAGCTCCTCCTCCTGGACGTGTCCTTCTGCTCGCAGGTGGACGCCCGCATCGTCCAAGAGCTCTGCGGACTCTTCCCCAACGTGGCCATCAAGAAGAGCTTTACCCAGTGACCTCACTCAGCCCCACCCTCACACAGGGGCAGTGACACAGGGACACCAGGGGGAGGTGCTAATTTAGACTAGCAGGGTAGAGTACTACTGGATTTCCAGTGGGTAGAATGAATGGGCCTGATGGCTGAGAGCACTGAGGCCTATTGTAATGTGGACTGAATGGTTAGGAGTGTTGTGGTGCCCTAAGCATCAGCTGAACACCTCACCCACACCTCAACACAGTCTCCTCGTGTCAAGCCGCTGAATGCAAGAAAGAGTCTTAAGAGTAAAACTGTTTGAAATCAGGGTCACGGCTGCCAAAGCCGCTAGATTTCATCATTGGTCAGCCGGTAACTGACACATCTGGTGGCTGCTTGTCATCTGCCCACCCCCCACCACCCTGTGACGCATTTAGTAAAATGGGTGACCTCAATGTTGCATCTGAATCTGAAATctcagggtttttattttgtttatattgttttaatttgttttatttatttttgtccgCGAAACATTTGAGTCCTGTTTGATTTCCACTGCCACAGTTTGTTCTGAGACAACAAAAATTATGGGAGTTCATAAAAATTTACATTTGGCACTGATACTGagacaaaacatttttggggtgTATTTGATGTTGAATATTGTGCAAATTGTATGATTGTAAAATTATATCACTTTCCTTAATTATTTATTGATCTTGTAGTATATTATTGCACATCTCCAATGCTATGAAGCATTTCCTTTAAACTGAAACAAAGCTATTGAGGAATAAACGCTATACAATAGGCTGTACTTGTGAGCACCCACATTCCCATACAGAACATCTTCGCATGTGCATGGGAGGTCGTTTCACTCTCCTGCAAATGTGATAATCGAGGGGCAACTACTGCGGAGTAGATTAGCCTCTCTTATCCCCTCTCTTCACTATCTTTGTTGTTGTGGATATCGGCCTGATATGCAGCTACTGAAATTTTTTATAGCTGAATCTATCTTTATGCAAAACCTGAAGTTTCATTTTGAGCACATGCTAGCTAGTATGTGAAGTATTTTTGTGCCTTATATTCATGACTGAATGTGGTGTCCATGTGTGTCAGTGATTTGTAATGCTTTGCTTCCTGCCCTCTACCAAAGTTACTAGCAAATCCCAGGTCCCTCACTATAGCTTTATTTGACCAGTGAAGAAACCCATGCAGATCTGTCATCTTGATTGACACATGCAAAGCCATATTTATTTTAAACAGAATCTTATCTCCATCTTTCAATTCCCTTTTTATTAAGTGGCAGTTATGTGAATGTCTGCTTTTTGGATTACATTTTCTTTTATCTGTGGAAACGTGGTCTGGTCACACTCAAATCACTAAAGTAACCTGCAGAGGCAAACTATTGAAAAACATATTAATGTCAACACTCGTacaacgaacacacacacacaacaaacgcACACAATCTGTCATCCTGCTACACAAATCTAGTTCCTCTCCTTTGTCCGGTCACTAGTTGACCAAAGTCACCACAATTTTCACATTGTAATGCTACTTTTATTTAAAGGCATTTATTTATGTGGACCTGCTCTTTTTTGCAGTGATTGACCTTTCCCAGTTAgttttggatgtgtgtgtgtgtggtcaaacTTTGTGCCATTTGTAAAAACTTTAGTAATGTACCCTTAACTAAGTGTGAATGTCAGGTGTGGTGTCATCAAGACTCGCCGGCAAATAACCGCTCTAAAGTATTGAAAAAAGGTTGCACCTCTACTACGACAAAACTGGGTGCTTTAATTTTAAATAAACAGAAGGTTGATGACTGAGA
>XM_021563129.2
TATATCTGTCTGCGGCGCCGGTCCAGGAGCGGAACTCGGGGTGAGGCGCTGACCAGCAGGCGGGCCGTGGAGTCAGGCCAGCGGGCCACCCTGCCCATCAGCGTGGAGGTGGAACAGTATGCCAAAGGTGCTGGACTTCAGCTCCCACTACGGCAGTGAGAACAGCATGTCGTACACCATGTGGAACCTGGCCGGCATGCCCAACGTCTACCCCAGCTCTGGGGACTTCACCCAGACGGCCGTGTTCAGGGCCTACGGGACGTGGTGGGAGCAGTGTGCCAGCGCACCTCTGCCGTTCCGCCGCACGCCCAAGGCCTTCCATAGCCAGGACTACATCGAGCTGGCCTTCGAGGAGCCCGTCTACCCCACAGCTGTGGAGGTGCTGGAGACCTACCACCCGGGGGCCATTGTCCAGATCATGGCCTGCTCCCTCAACCCCTTCTCTCAGAACCCTCCCACAGACGTCAGGTGGGAGGTGTTGTGGGCTGAGGAGCCCACCAATGTGCTGACCCCCCAGGCCAGGCAGTTCTCCCCCAGCATCAAGCAGCTGAACTTCCCCACCAACTTGATCCGCGTGGAGGTCAACAGCTCCCTGCTAAAGTACTACACAGAGCTGGATGCCGTCGTCCTGCGTGGCCAGAAAGAGAGGCCCATCCTCTCCCTTTATAAGATGCCCAGGATCGACATCTGTGACCTGAGTGACAGTGATGAGGAGCTGTCTGACCCGGGAGCCTCCTTCCGACAGGCCGGGGATGGCAAGCACATTAACCTGGGGAATGGATACTTCGATAAACTGCCCTACGAGTTGATCCAGCTGATAGTCAGCCACCTGACCCTGCCCGACCTATGTCGCCTAACCCAGACCTGTAAGCTACTCCACCAGCACTGCTGTGACCCCCTCCAGTACATCCAGCTGAGCCTGCAGCCATACTGGGCTCGCCTCAGTGACACCTCCCTGGGCCACCTGCAGGGCCGCTGCACCCTGCTCCAGAGACTCAACCTCTCCTGGACCGGCAACCGCGGAGCCCTCACCCTCACTGGCTTCAGCAGctTCATGAAGGCATGTGGCGGGAGCCTGGTGTGTCTGGAGCTGTCGTGTTGTCACTTCCTGAGTGAACCGTGTCTAGAGGTCATCTCCCAGACGTGTCCCGGGCTGCAGGAGCTCAACCTGTCCTCGTGCGACCGCCTCCACCCCCAGGCCTTTACACACATCTCCAAGCTCACCCAACTGCGCCGGCTAGTGCTCTACCGCACAAAGatagagCAAACAGCCATGTTGAGCATCCTAACATTCTGCATTGAGCTGAGACACCTCAACCTGGGGAGCTGTGTGATGATAGACGACTATGACGTGGTGGCCAGCATGCTGGCTGTCCGCTGCCGCTCACTGCGCTCCCTGGACCTGTGGCGCTGCAGAAACCTGACGGAGCGCGGCCTGGCTGAGCTGGCTGCAGGGTGCAGACTACTGGAGGAGTTGGACCTGGGCTGGTGCTCCACACTGCAGAGCAGCTCGGGCTGCTTCCAGCACCTGGCTCGCAACCTGCCGTGCCTGAGGAAGCTCTTCCTCACCGCCAACCGCACCGTGTGCGACTCGGACATTGAGGAGTTGGCTGCCAACTGCCCCGCACTGCAGCACCTCGACATATTGGGCACCCGGATGGTAAGCTCCTCTTCCCTGAGGAAGCTGCTGCAGGCGTGTCCTAAGCTCCTCCTCCTGGACGTGTCCTTCTGCTCGCAGGTGGACGCCCGCATCGTCCAAGAGCTCTGCGGACTCTTCCCCAACGTGGCCATCAAGAAGAGCTTTACCCAGTGACCTCACTCAGCCCCACCCTCACACAGGGGCAGTGACACAGGGACACCAGGGGGAGGTGCTAATTTAGACTAGCAGGGTAGAGTACTACTGGATTTCCAGTGGGTAGAATGAATGGGCCTGATGGCTGAGAGCACTGAGGCCTATTGTAATGTGGACTGAATGGTTAGGAGTGTTGTGGTGCCCTAAGCATCAGCTGAACACCTCACCCACACCTCAACACAGTCTCCTCGTGTCAAGCCGCTGAATGCAAGAAAGAGTCTTAAGAGTAAAACTGTTTGAAATCAGGGTCACGGCTGCCAAAGCCGCTAGATTTCATCATTGGTCAGCCGGTAACTGACACATCTGGTGGCTGCTTGTCATCTGCCCACCCCCCACCACCCTGTGACGCATTTAGTAAAATGGGTGACCTCAATGTTGCATCTGAATCTGAAATctcagggtttttattttgtttatattgttttaatttgttttatttatttttgtccgCGAAACATTTGAGTCCTGTTTGATTTCCACTGCCACAGTTTGTTCTGAGACAACAAAAATTATGGGAGTTCATAAAAATTTACATTTGGCACTGATACTGagacaaaacatttttggggtgTATTTGATGTTGAATATTGTGCAAATTGTATGATTGTAAAATTATATCACTTTCCTTAATTATTTATTGATCTTGTAGTATATTATTGCACATCTCCAATGCTATGAAGCATTTCCTTTAAACTGAAACAAAGCTATTGAGGAATAAACGCTATACAATAGGCTGTACTTGTGAGCACCCACATTCCCATACAGAACATCTTCGCATGTGCATGGGAGGTCGTTTCACTCTCCTGCAAATGTGATAATCGAGGGGCAACTACTGCGGAGTAGATTAGCCTCTCTTATCCCCTCTCTTCACTATCTTTGTTGTTGTGGATATCGGCCTGATATGCAGCTACTGAAATTTTTTATAGCTGAATCTATCTTTATGCAAAACCTGAAGTTTCATTTTGAGCACATGCTAGCTAGTATGTGAAGTATTTTTGTGCCTTATATTCATGACTGAATGTGGTGTCCATGTGTGTCAGTGATTTGTAATGCTTTGCTTCCTGCCCTCTACCAAAGTTACTAGCAAATCCCAGGTCCCTCACTATAGCTTTATTTGACCAGTGAAGAAACCCATGCAGATCTGTCATCTTGATTGACACATGCAAAGCCATATTTATTTTAAACAGAATCTTATCTCCATCTTTCAATTCCCTTTTTATTAAGTGGCAGTTATGTGAATGTCTGCTTTTTGGATTACATTTTCTTTTATCTGTGGAAACGTGGTCTGGTCACACTCAAATCACTAAAGTAACCTGCAGAGGCAAACTATTGAAAAACATATTAATGTCAACACTCGTacaacgaacacacacacacaacaaacgcACACAATCTGTCATCCTGCTACACAAATCTAGTTCCTCTCCTTTGTCCGGTCACTAGTTGACCAAAGTCACCACAATTTTCACATTGTAATGCTACTTTTATTTAAAGGCATTTATTTATGTGGACCTGCTCTTTTTTGCAGTGATTGACCTTTCCCAGTTAgttttggatgtgtgtgtgtgtggtcaaacTTTGTGCCATTTGTAAAAACTTTAGTAATGTACCCTTAACTAAGTGTGAATGTCAGGTGTGGTGTCATCAAGACTCGCCGGCAAATAACCGCTCTAAAGTATTGAAAAAAGGTTGCACCTCTACTACGACAAAACTGGGTGCTTTAATTTTAAATAAACAGAAGGTTGATGACTGAGA

Function


NR:

description
F-box/LRR-repeat protein 4-like isoform X2

GO: NA

KEGG:

id description
K10270 FBXL4; F-box and leucine-rich repeat protein 4

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021563119.2 False 3884 mRNA 0.50 9 42664424 42683349
XM_021563129.2 True 3607 mRNA 0.51 8 42669376 42683349

Neighbor


gene id symbol gene type direction distance location
LOC110490022 LOC106605035 coding upstream 22264 42617702 ~ 42642160 (+)
LOC110490015 LOC106605038 coding upstream 47936 42593932 ~ 42616488 (+)
LOC110489996 pnisr coding upstream 71872 42582359 ~ 42592552 (+)
LOC110489991 LOC106605026 coding upstream 91751 42529081 ~ 42572673 (+)
LOC110489963 LOC106583951 coding upstream 280467 42251937 ~ 42383957 (+)
LOC110533774 NA coding downstream 192875 42876224 ~ 42877363 (+)
LOC110501569 mms22l coding downstream 194864 42878213 ~ 42910743 (+)
LOC110490056 LOC106605039 coding downstream 287666 42971015 ~ 42975154 (+)
LOC110490064 LOC106605040 coding downstream 292051 42975400 ~ 42978004 (+)
LOC100301866 LOC106584110 coding downstream 342051 43025400 ~ 43042479 (+)
G144731 NA non-coding upstream 20486 42642203 ~ 42643938 (+)
G144751 NA non-coding upstream 57322 42565552 ~ 42607102 (+)
G144706 NA non-coding upstream 177992 42483841 ~ 42486432 (+)
G144634 NA non-coding upstream 259303 42404877 ~ 42405121 (+)
G144629 NA non-coding upstream 262180 42401898 ~ 42402244 (+)
G144812 NA non-coding downstream 48581 42731930 ~ 42732135 (+)
G145043 NA non-coding downstream 77632 42760981 ~ 42761299 (+)
G145044 NA non-coding downstream 78852 42762201 ~ 42762510 (+)
G145045 NA non-coding downstream 82757 42766106 ~ 42766418 (+)
G145191 NA non-coding downstream 212083 42895432 ~ 42895766 (+)
G144661 NA other upstream 98394 42510330 ~ 42566030 (+)
G143938 LOC106605049 other upstream 695107 41968374 ~ 41969317 (+)
LOC110489834 eny2 other upstream 1122833 41539240 ~ 41541654 (+)
G139179 NA other upstream 4612680 38051359 ~ 38051744 (+)
G139101 NA other upstream 4720412 37943742 ~ 37944012 (+)
G146054 LOC100136012 other downstream 1047523 43730872 ~ 43731218 (+)
G146091 NA other downstream 1085358 43768707 ~ 43769162 (+)
G146114 NA other downstream 1116055 43799404 ~ 43799853 (+)
G146165 NA other downstream 1203247 43886596 ~ 43889609 (+)
G146226 NA other downstream 1313431 43996780 ~ 43997065 (+)

Expression



Co-expression Network