LOC110501569 (mms22l)


Basic Information

Item Value
gene id LOC110501569
gene name mms22l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42878213 ~ 42910743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110501569
ATGGGGCAGTCGGACAACGGCGGTTGCTATGCTTTTAGCAGCACGCTGAACCCCGTTACGGTGGCCGGGATCGACAGTTGGCCTCAGCTCAATGGTCGGGGTTTATCGCCGTCTAGCGAGTTTAGaagggGCCAAGCCAGCAGCCTCCATTATGAGGCAGAAGACCTTAGGCAACAGCGTGTGCTGTTTCTCCAATATGTCAAAGTCTTCCTATACAGGTACCTGGAGCCCACCTCTCCCTTGGAGGAGGGCCCCTGTCAACCATATGAGGAGCTGGAGGCTCAGCTACCCTCTGCTCTGCTGGAGGAGCTCTTTGGGGTCACTCTCCTCATAGTGAGCCTCAAAGACCTGCCGGCCAACATCCAGAGTGCCCTCACCATACAGCGCCAGGGCAAGAAACCGCTGGAGGACAACTGGAGTTTTGTGGGTGAGCTGCTCAAGTCCACCTGTAACCCTAAGagaACGCTACAGGAGGACCAGATCAGAATGCACGTGCTCTGCTGCCTGAATCTGTCTCTGCTATGGAAACCTAACAATAGCACTGTCACCACACTCTGGGAGTACTACAGCAATATGTGTGTGCCTGCCAGTTCCCTCGAGAAGAGCCGGGCGTGCTTATGGCGTTCCGGCAACGTTCCGGCAGCGTTCTCGCTGGCTGGACCGggcgTACTCCGAGTTCCACCAGCGGCGGGGCTGATGAACTTCCTGCTGTTGTTCGTTGTGGTGGCCTGGCAGGCCTAGCTGGAGGACATGCCCGGCTGGGCCTGTGAGCTGCTGGGCCTGCTCCCTCTGGACCCCGCCCAACAGAACCTGGTGTAGAGGGGCCTGTTGGCTCTCTTACTGCTCTTCCAGGAGGGCCTTGATGTGGGGGCCCAAGCTAGCTGGCTGGCCTCCTCCTTCTCTCAGACTGCCAGGGAGTTCTACCCGAAGACCACAGAACCGTCTCGCCGCCTGGCCCTCTGGGGCCCTACCTAGAGGGTGTGGCCGAGGTGTTTGAGACGAGCGTGCGTCTCGGTCTGTCGGAGGAGGAGCTACTCAATGAGGGGTTTGGTCTGCTGCTGCCCGCCTGCCGCCAGTCGGAGCTGACCTCTGCCCTGGGCTTTCTGCAGATCGTGCTGAGGGTGCTACGGAGGGTACATCTGTGCAATGTCTAGCTTGGCCACTcagcatgcccccccccccccggtgccTGGCTGCCTCCTCCCAATGTCAGCGTGGGTAAAGACCGCCACCTGGCGGTTGCAGCAGCTCTCTGGGCTAACTTTTTCCCCTTCCTCCGCAGCCTGTGTCTTTCCAACACCCCTCCTGCCCAGCTGGCTGATGCTGCCGcagGATTTACTCTGCTGGTCTTTGACCTTCCTAGCTCTGCCCCCCAAGACCTCCAGCCCAACCCCATCCAGTCCATCATGCAGTGCTTAAGCTGGGATGACATGCTGCACCCCCTGCTAGTGACTCGCTACATACCCCACCTGCTCCAGAACAGCGAGCTGGTGTATTCAGTGAGCTCCGGCTGTGGAGGTTCCGTGTCGGGCTCAGCCCAGAACCTGTCTGTGAGAGCCTGGTTCCGCTGTGTTCTGCAGCAGCACATCCACAAGAACCCAGATGGCATCGACAGCAGAGTAGGTACAGAACCTCAACCTAGAAACCTGGACATGCAGGGGCAGTTGTCAGAGCTCACTAGGCTCGTATTAAGGCTCCCTGAGGTGGACTCcctactttTGCAGAGGGCCGGGCTGCAGCCTAGAGCCAGCAGCAAGCTAGTGCCCAGGTCTGCTCTGGAGATGTTCATCaaggctgtggagtgtgtgtacagtgggcTGCAGGTGTTGTCTGAGCGTTCTGCCATGGTCGCCCGTGCTCTGGACTACACAGGGGGACATCATGAATATATCAAACAATACCTGGTCAATAAGAGTCCTCAGGAGGGGCTGCTGCTGGCCTACTGGGCTGTGGggtgcGTGGTGAAGCACTGGAGTCCCCTGCTGGCCACCTCCAAGGCCCAGCAGCTGCTGTTCAACGTTGTCAACGGGCAACAGCCAGTATGTCTGTCTCAGGGAGCCTACCTAAAGAAGCAGCTCCGTGATGTCATCTCCAAGTACCTTGACCATTTCCTGCCTGCCACTCCATCGGTTGGGGCCATAGCCAATCACCCGGTGCTGCTGGCGGCCTGCGAGGCCACGCCCGCCCCACGTGGGGCAGCACTGAGGAGGAGCGTCCTGCAGGTGATCAGTGAGAACTTCCTGCATTTCAAAGGCAACGCCCCTCCTCCCCGCCTGGTCACGGTCCTGGCCTTCCTATTGGAGCTGCTGAGACAGAACAATGACTGTGACCCCGCCCTGCTCACCATGCCCCTTCCCCTCTCTGCTCCGCTGCCTGAAGCTGGTCAACGAGCTTCACGTGAGGAGGACCAGTACAGAGGCCCTGCAGCTGGTGGTGGAGAGACGTTCAGCCGCCGCCGGGGATGCGCCATGTGACCAACTGCTATaa

Function

symbol description
mms22l Predicted to be involved in double-strand break repair via homologous recombination and replication fork processing. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be active in nuclear replication fork. Orthologous to human MMS22L (MMS22 like, DNA repair protein).

NR:

description
PREDICTED: protein MMS22-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110501569 True 2487 mRNA 0.60 17 42878213 42910743

Neighbor

gene id symbol gene type direction distance location
LOC110533774 NA coding upstream 850 42876224 ~ 42877363 (+)
LOC110490029 LOC106605030 coding upstream 194864 42664424 ~ 42683349 (+)
LOC110490022 LOC106605035 coding upstream 236053 42617702 ~ 42642160 (+)
LOC110490015 LOC106605038 coding upstream 261725 42593932 ~ 42616488 (+)
LOC110489996 pnisr coding upstream 285661 42582359 ~ 42592552 (+)
LOC110490056 LOC106605039 coding downstream 60272 42971015 ~ 42975154 (+)
LOC110490064 LOC106605040 coding downstream 64657 42975400 ~ 42978004 (+)
LOC100301866 LOC106584110 coding downstream 114657 43025400 ~ 43042479 (+)
LOC110490122 LOC106605034 coding downstream 180295 43091038 ~ 43097854 (+)
LOC110490166 LOC106605016 coding downstream 359923 43270666 ~ 43275284 (+)
G145045 NA non-coding upstream 111795 42766106 ~ 42766418 (+)
G145044 NA non-coding upstream 115703 42762201 ~ 42762510 (+)
G145043 NA non-coding upstream 116914 42760981 ~ 42761299 (+)
G144812 NA non-coding upstream 146078 42731930 ~ 42732135 (+)
G144731 NA non-coding upstream 234275 42642203 ~ 42643938 (+)
G145211 NA non-coding downstream 19359 42930102 ~ 42933210 (+)
G145224 NA non-coding downstream 38178 42948921 ~ 42949201 (+)
G145271 NA non-coding downstream 112240 43022983 ~ 43023204 (+)
G145310 NA non-coding downstream 178071 43088814 ~ 43089105 (+)
G145313 NA non-coding downstream 187196 43097939 ~ 43098562 (+)
G144661 NA other upstream 312183 42510330 ~ 42566030 (+)
G143938 LOC106605049 other upstream 908896 41968374 ~ 41969317 (+)
LOC110489834 eny2 other upstream 1336622 41539240 ~ 41541654 (+)
G139179 NA other upstream 4826469 38051359 ~ 38051744 (+)
G139101 NA other upstream 4934201 37943742 ~ 37944012 (+)
G146054 LOC100136012 other downstream 820129 43730872 ~ 43731218 (+)
G146091 NA other downstream 857964 43768707 ~ 43769162 (+)
G146114 NA other downstream 888661 43799404 ~ 43799853 (+)
G146165 NA other downstream 975853 43886596 ~ 43889609 (+)
G146226 NA other downstream 1086037 43996780 ~ 43997065 (+)

Expression


Co-expression Network