LOC110490056 (LOC106605039)


Basic Information

Item Value
gene id LOC110490056
gene name LOC106605039
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42971015 ~ 42975154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563186.2
ACTTCATGTTTACAACATCCTGAGTTGGAGGCGCGCCGGTGAGGACTGGAGAACTGAAAGTATAGCTGTCAACGTCAATTTATGTGCTCCCATGACTTGCTATCAGCAGAAGTGCCTGTGAGTCCTGTGCGCCTGGAATGATGGATAAGTTCAAAACTGTTCTTAACATTTTTCAGAAACAGCAGACTAGTCTCGGGTTTGGTTTAGTTGCGTTGTTAACTGCAGGCGGGGAACAGATATTTTCGTCAGTGGTGTTCAAATGTCCTTGCAGCGGCTGGAACTTTTCCTACGGCATGGTGTTTCTCTTAGTGCCTGCTCTGGCACTGTTGGTGTTAGGTTACATCATGAGCAATAAAACATGGAAATTGTTTACAGGTTTGTGTTTACGCAAATCCAAATTTTGTAATTTTAAATATGTTTGCGCCAGTGGAGTGGTCTTCTTTCAGATCACCACGACAGCAGCAGTTGCACCTGTCAGTTGGATTGCAGTCGCTTTGCTCAATGGCAATTACTTTGAATGCGCCATGACTGGCGTCAATGTAACGGTTTTCACAAACCACCTTTGCGATGGAAAGAGTCCGCAGTGCCAGGATGAACTTTATAAATTCCCCTGCGGGAGAGCAACCCACGTGCCCCAATCCGACAGCAATGATGTGCTGGCAACCATCCGCGCTGAGTCGCAGGTCCTGGGTTGGCTACTGATTGCCTCCATCATGGTCTTTAACCTCCTGCTGACCTGTGTTGCCCGGTGTAACTCCCCAGTCAGCTACCTGCAGCTGAAGTTCTGGAGGGTCTATGCCCAGCGGGAGAGCGACCTGCTGGAAAGCTACACGGCAGATCACGCCGAAAAGCTTGCCGAGAGGAACCTGAAGAGCTTCTTCCAGCAGACGCCTCCAGAGCCTGTCACGACCCCACCTAACCGGGCATGGGAGAAGATCTCGTCCCTCTACAGGTTCAGCACCAGAGACCACTACTACAGCATCCTGCACAAGTACGTGGAGATGTGCCACAACCCAGCAGAGGCCAGGGCCCACAGGATGTCATCTGTCAGGTCAGACGGTCCAGACACTGCTAATCCAGCCGTGCTCGCCTTTGTGGATGAGGGCAAGATGATGCTGTGAATGGGCATGCATATGATCATAGGAACAGCATCACTATCATGACCCTATCTGTAAGCATCCTTATTTTTATCATCAAAGTCATGACTCATTATAGAGGATTATTGTCAGCGTTCTAATCTtcgtcatcatcgtcatcattatTGCTGTGCATCAGGGGATTTTTGAGTAGAAAGACGAATTACATCTGATTAACCACTCTCAGGTCTTCACTTGAATAACAATATTTCCCAATTTTATATTGTTACTTGAAAGTTCACTCACTGTATCACGAGTGCTGCTTGCAGCTTTTTATTTGAAATTCTATGCTCAGAAgggattttaaaaatatattttttttatagttGATCAtactttctttctcttctcttctactTTTCTTTTCTCTTTAGTATTTTTATGCTCCTCAGACTTGACCTACATCCAGGTGGTCTGTGGTATTAAACAGGAAAAGCATGGTCTGGTTCTAtgaaatggggcggcaggtagcctagtggttagagtgttgggccagtaactgaaagacactgaatccccgagctgacaaggtcaaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcccatgctgtcattgtaaatacaaatttgttcttaactgacttgcctagttaaataaaaaataaggagCATTTTTACTTCCTGTTAGCTAGTGCACTGCAAAATACTTTCAAGTAAAACCCTGTTGCCAGTGTATATGTAGCATCTTTAGGACGGTAACCCACAATAATATTTAGTTAGACCTTACAAGCTTGGTCTCCAACGTATTTCTGCGTTATTGTTATTTATATTATTGCACTGTAGACCGAACATTGCCACGAGTGAACTGCGATGAACATCAGCTCTGAATTGAATAATAACTTAGCGAAATGGTTAGATCCGTATCTCTGTGTAAAGCTTAAATGTGCTGCATTGGTATCAGAAGTCTTATGGTACTATCGTGTGAGGGCAATGGGAGTTGTTGTTGGATGAGTGGAGGAGCATGAAAGTATTCACTTTAAGTATGAGGATAATGCAGCAATTTGGTCCAAAAGGGGAAAGTAGAGACTTTTTGAAAGGGAACACGCTATGTTATTGCCACAATGTCACTCCACTCACTGTCATTCAGGAAGCGAGTCCTGTGCCTCGACTTTCTTTCAAACACCTTTTCACCTCCACCTGCACCTCTGATTACGTCACGCTCACAGTATCTCATTTCTGACACCAATGCAAATGAATTTGAGGTAACGGGTCCACAAAGCTCTGAAGACTAACATATACCTTGATAAATTGGTCATTAGGGTAATTTTTACATTTTGTGACAAGATACATTTTGATTTAGTACATTAGGTACCTGATGTGGCTAGTCCAGCCCTGTTAAAAGCTTCTCTGTGGGAGAAATCAATGCACTCAGAGCCTTTTAGGGTGAGGATATTATAGCTTCACCCTGTGGGAATTGTAGAGCATAGAAACTCATCACAGCCTTCTATAGGAAATGGGAGAGGAAACTCTTCTGTTTCCCAACCACTGACTCAGAACACGTGTTTGATCTGCCTATTTCTCCTTTTTCTGAAAAAATGGTAGGTCTTATGCAAGTCTAATGTAATGTCTAGCTAGCTATATGATTGTCTATAAAACTGTGCTCTGTGTTATATTTTGGGGTATGCATGATATGCATCTGCGTGAGGTTCCATAGCTCAGTATTAACATTACTGTTGATTTCCATTTAATTTTGCAACTGCTAATGAATGCAGTGCAGCCTTCGTGCCGAAATACCAcattgctttgtgtgtgtgtgtgtgtttaagcttGTGCCTGTAAGAGAAAGGGAAAAcgaaagagagggcgagagagagagcaaagggtgatttcatatactgtataatgttgtATCTGGCTCAAGCTGTATGTGAATTTAATACAGATACTAAATTGTGTTGCTGAAATCACTGTGCTGCTCAAATAACTATCAAAATAAATCTGGTTAAAGTGAA

Function

NR:

description
protein FAM26F-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563186.2 True 3125 mRNA 0.43 2 42971015 42975154

Neighbor

gene id symbol gene type direction distance location
LOC110501569 mms22l coding upstream 60272 42878213 ~ 42910743 (+)
LOC110533774 NA coding upstream 93652 42876224 ~ 42877363 (+)
LOC110490029 LOC106605030 coding upstream 287666 42664424 ~ 42683349 (+)
LOC110490022 LOC106605035 coding upstream 328855 42617702 ~ 42642160 (+)
LOC110490015 LOC106605038 coding upstream 354527 42593932 ~ 42616488 (+)
LOC110490064 LOC106605040 coding downstream 246 42975400 ~ 42978004 (+)
LOC100301866 LOC106584110 coding downstream 50246 43025400 ~ 43042479 (+)
LOC110490122 LOC106605034 coding downstream 115884 43091038 ~ 43097854 (+)
LOC110490166 LOC106605016 coding downstream 295512 43270666 ~ 43275284 (+)
LOC110490176 NA coding downstream 375973 43351127 ~ 43353661 (+)
G145224 NA non-coding upstream 21814 42948921 ~ 42949201 (+)
G145211 NA non-coding upstream 37805 42930102 ~ 42933210 (+)
G145191 NA non-coding upstream 75249 42895432 ~ 42895766 (+)
G145045 NA non-coding upstream 204597 42766106 ~ 42766418 (+)
G145044 NA non-coding upstream 208505 42762201 ~ 42762510 (+)
G145271 NA non-coding downstream 47829 43022983 ~ 43023204 (+)
G145310 NA non-coding downstream 113660 43088814 ~ 43089105 (+)
G145313 NA non-coding downstream 122785 43097939 ~ 43098562 (+)
G145315 NA non-coding downstream 123888 43099042 ~ 43099255 (+)
G145317 NA non-coding downstream 130102 43105256 ~ 43105481 (+)
G144661 NA other upstream 404985 42510330 ~ 42566030 (+)
G143938 LOC106605049 other upstream 1001698 41968374 ~ 41969317 (+)
LOC110489834 eny2 other upstream 1429424 41539240 ~ 41541654 (+)
G139179 NA other upstream 4919271 38051359 ~ 38051744 (+)
G139101 NA other upstream 5027003 37943742 ~ 37944012 (+)
G146054 LOC100136012 other downstream 755718 43730872 ~ 43731218 (+)
G146091 NA other downstream 793553 43768707 ~ 43769162 (+)
G146114 NA other downstream 824250 43799404 ~ 43799853 (+)
G146165 NA other downstream 911442 43886596 ~ 43889609 (+)
G146226 NA other downstream 1021626 43996780 ~ 43997065 (+)

Expression


Co-expression Network