LOC110490064 (LOC106605040)


Basic Information

Item Value
gene id LOC110490064
gene name LOC106605040
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42975400 ~ 42978004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563200.2
CCTCACTGGATTAAGTGGGTGGACAAGGGTGGGGAACAGAGATACagtgaggagaagaaggaggagttggtgaggaggaagagtgaaagagaaagaacaggaaggagggaaagggaggggcagaaataGGCTCAAAAGAACTTCAGTGTGTTTGTCTTCGGCTCAAACAGCACAGGGAGTGGAGTGAGTGTTGGGAGACGCAACCGTTTGCGTCTAAACTATTTCACCGCTGTATTTTTCCTCTTCAAATTCTCCATTCTCTTTGCATTATTTTGGTTTTTGCGGAGCGTGCGTGACAAACCCCTCGTCGACACCATGGATAACTTCCAGACCGTCCTGCGCTTTTTCATGAACCAGAAGGCCACCATTGGCTACAGCTTCATGGCCATCCTGACCATCGGGGGAGAGCGAATCTTCTCCATGGTCTCATTCCAGTGCCCCTGCAACCACGACCAGAACTTTGCATACGGCCTGACCTTCCTGTTGGGCCCGGGCCTGGTGCTTCTGGTGCTGGGTCTTTTCTTCAGCAGCAGGCTGTGGCGCCTCTATACTGGCTGTTGCCTAAACCCCATTAAGCTATGCCCCAGGGGCAACTGTTTCGGCTGCCTCAAAGTGTTTGTCAAAATCTTCTCCGGTGCCTGTGTGGCCCCTATCATGTGGCTGTGTGTGGCACTGTTGAACGGGACCTTCTACGAGTGTGCCGTCAGCGGGCTGGATGATAACCTGGTGGTGGATCTGTTCTGTAAAAACAAGACCTTGATGTGCCGGGAGGAGTTGGCCCGCGTGCCCTGCAGCAAGTCCAAGCTGCCCAGCGACGAGAACATGGAACTGTTGCTCATGTTCCGGGCTCAGTCACAGATACTGGGCTGGTGTATTATCATCATTTCAGCCGTTCTAGGGCTCCTCGGGACCTGCTACACCAACTGCCGCTCAAAGGTCAGCTACCTGCAGCTCACCTTCTGGAAGCGCTACGTAGAAAAGGAGAAGGAGCAGTTTGACACATTCGCTATGGAGTATGCATCCAAGCTGGCCGAGAGGAACCTAAAGAGCTTCTTTGAGAACCGTGACCCGGAGATATTCCCATTCCCCAACCACAAGGCATGGGAGGAGATCTCAGCCCTCTACACCTTCTCCAAGAGTGAGCAGTGCTACAGCACCCTGCAGAGGTATGTGGAGCGTGATGACCGAGACTACAGCCCTGAGAAAAGACCAGTCATGGAGCTGGAGCACGGCATAGAGATGGGCTGAGAGAGGGGCAGACAATGGCAGAGTATGAATTATAGTATATCCTATTTGTTTTACCTTTCTAAATGACATGCAGTAAATGCAATAGATTTAACTCACAGACTGAGAAGAAGCGTTGTTGCCTGCATTTCCCCCAAAGCACTGACATATACACAGGGCACCATTCAGAAAGTTATTACCAGTGACACAGCAGTGATTTACCAAAGAATGCAGCCATTGCAGAAGTGGTGAAACAGTAGGGCTTCTTGTCTGCTGCAACCCACAGTTTGTGAATGGTCATGAACACTAGCTGATGCAATGTCCCTGTCATAACAAACACTTTGATTTGACAaagtctcctctacctctctttgaCATGCCTTTGAAGCATTTCATTCACTTTACTGGTACATAATGGTAGGAGAGCTATTGTAATTGTATAGCTTTAATTGGGTATTTTGTGTGTAATATTGCACCACACTATGAATGCTACATGAATGACAGAGTTGTACCATGCAATTTGCTTGAAATGTTTACACAACTCAATGTTTACATTATTATGACAACCTGAGCATTATAAAGTGTCTTTCTATGGCACTACAAGCGAAGCAGCTCACTTTATATTTTATGTTAATTTGGGAATAACTCTGCCATTACTACCGTCCTGTTCAATTATTGACATCAATAGTAGAGGTAATAAATCATGTATGACATACGGGATATTCTCACTGGATTCTACAAAAAACATTTGTTGAACCTGTTTCTTTTTTTTCGTTCTCCTTTCTAACATCTGTAAAATCCCTACCATGTAATGTGTAAGCACTAAATTAACATGTACATAGAACATTATTTGGACATGTTGCATCATGCctgataaaaaaacaaacattttagggTGGTGAGTTTGTGTGTAAAAACGGTCCATATTCCACCATGTTTAACTAAGAGGGGGAGAATGCAGCCATATCGGTGTAGTtatagtaccttcagaaagtattcatacaccatGACTTGtgccacatgttgttatgttacagtctgaaaaacaaatggattcaattgatttTGTTTCTCAcccgtctacacacaataccccataatgacaaaatgttttt

Function

NR:

description
PREDICTED: protein FAM26E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563200.2 True 2339 mRNA 0.46 2 42975400 42978004

Neighbor

gene id symbol gene type direction distance location
LOC110490056 LOC106605039 coding upstream 246 42971015 ~ 42975154 (+)
LOC110501569 mms22l coding upstream 64657 42878213 ~ 42910743 (+)
LOC110533774 NA coding upstream 98037 42876224 ~ 42877363 (+)
LOC110490029 LOC106605030 coding upstream 292051 42664424 ~ 42683349 (+)
LOC110490022 LOC106605035 coding upstream 333240 42617702 ~ 42642160 (+)
LOC100301866 LOC106584110 coding downstream 47396 43025400 ~ 43042479 (+)
LOC110490122 LOC106605034 coding downstream 113034 43091038 ~ 43097854 (+)
LOC110490166 LOC106605016 coding downstream 292662 43270666 ~ 43275284 (+)
LOC110490176 NA coding downstream 373123 43351127 ~ 43353661 (+)
LOC110501584 NA coding downstream 573578 43551582 ~ 43558937 (+)
G145224 NA non-coding upstream 26199 42948921 ~ 42949201 (+)
G145211 NA non-coding upstream 42190 42930102 ~ 42933210 (+)
G145191 NA non-coding upstream 79634 42895432 ~ 42895766 (+)
G145045 NA non-coding upstream 208982 42766106 ~ 42766418 (+)
G145044 NA non-coding upstream 212890 42762201 ~ 42762510 (+)
G145271 NA non-coding downstream 44979 43022983 ~ 43023204 (+)
G145310 NA non-coding downstream 110810 43088814 ~ 43089105 (+)
G145313 NA non-coding downstream 119935 43097939 ~ 43098562 (+)
G145315 NA non-coding downstream 121038 43099042 ~ 43099255 (+)
G145317 NA non-coding downstream 127252 43105256 ~ 43105481 (+)
G144661 NA other upstream 409370 42510330 ~ 42566030 (+)
G143938 LOC106605049 other upstream 1006083 41968374 ~ 41969317 (+)
LOC110489834 eny2 other upstream 1433809 41539240 ~ 41541654 (+)
G139179 NA other upstream 4923656 38051359 ~ 38051744 (+)
G139101 NA other upstream 5031388 37943742 ~ 37944012 (+)
G146054 LOC100136012 other downstream 752868 43730872 ~ 43731218 (+)
G146091 NA other downstream 790703 43768707 ~ 43769162 (+)
G146114 NA other downstream 821400 43799404 ~ 43799853 (+)
G146165 NA other downstream 908592 43886596 ~ 43889609 (+)
G146226 NA other downstream 1018776 43996780 ~ 43997065 (+)

Expression


Co-expression Network