clec3ba (tetn)


Basic Information

Item Value
gene id clec3ba
gene name tetn
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42984409 ~ 42986551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563214.2
CACCCCTTGTCAAAAGAAAAAGGGAATAAAAGAACAAACGCCAGTTTGACATCTGTAAAACATTTGTTCTCTCAAAGTTGAGATTTCCTCTGTCAACTCCCAGAGTGCCAATTCTCGAAACATATTTTTCCTTGCTAGTAGTGGAAATATAAACAGTCGTTTACACATCATATCAGTGGCAATATAGGCTACTAAGATATACACCATGCATGTCAGTGGTGTGCATTTGTTgtttttccttctcctcctcggCCAATCCACATTCCAACAGACCTCATCTAAGAAAAAGGGCGGAAAGAAAGATGCTGAAAATAATGCTGCCATTGAGGAGCTGAAGAAACAGATTGATAACATAGTGCTGGAGTTGAATCTATTGAAAGAGCAGCAAGCCTTGCAATCAGTTTGCCTGAAAGGCATCAAGATTATTGGCAAGTGCTTCCTGGCCGACGCCGCTAAGAAGATCTACCACACAGCCTACGATGACTGCATTGCTAAAGGGGGCACAATCAGCACCCCTTTGACAGGGGAAGACAACGATCAGCTTGCTGACTATGTCCGCCGGAGCATCGGCCCTGAGGAACACATATGGCTGGGCATCAATGACATGGTGACCGAGGGGGAATGGCTCGACCAGGCGGGCACCAGCCTGCGCTTTAAGAACTGGGAGACTGACATTACCAACCAACCAGACGGTGGACGTTCCCACAACTGTGCCATCCTTTCCACCACTGCCAATGGAAAGTGGTTTGATGAGAGCTGTCGTGCTGAGAAGGCGTCTGTCTGCGAGTTCAATATCGTCTGAGAGCCAACTACTTTTGTTCTGTTGTTTCAGTCTTAACATCTACACTATATGGAAATATAATGCATGCACAATAATCTTTGTAATATCTGTATTATAACCTGTCTCAGCACTGAAATGTGGAACCAACATGATTAAAAGTAACCTATACTACACAAAGAAATCCACTGCTGCAAGGTATGCTGCACTGTTTATA

Function

NR:

description
tetranectin-like

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K17520 CLEC3B; C-type lectin domain family 3 member B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563214.2 True 995 mRNA 0.45 3 42984409 42986551

Neighbor

gene id symbol gene type direction distance location
LOC110501576 LOC106605029 coding downstream 22136 42922668 ~ 42962273 (-)
LOC110490051 LOC106581764 coding downstream 191634 42779410 ~ 42792775 (-)
LOC110490045 LOC106605033 coding downstream 256860 42724078 ~ 42727549 (-)
LOC118936750 NA coding downstream 297409 42686139 ~ 42687000 (-)
LOC110489980 LOC106605028 coding downstream 467128 42510322 ~ 42517281 (-)
LOC110490077 LOC106605036 coding upstream 12274 42998825 ~ 43019825 (-)
LOC110490115 LOC106605031 coding upstream 59862 43046413 ~ 43056269 (-)
LOC110490105 LOC106605024 coding upstream 70401 43056952 ~ 43088889 (-)
LOC110490133 lyplal1 coding upstream 139147 43125698 ~ 43131145 (-)
LOC110490140 LOC106605021 coding upstream 211037 43197588 ~ 43225313 (-)
G145584 NA non-coding downstream 35262 42948886 ~ 42949147 (-)
G145580 NA non-coding downstream 39090 42945063 ~ 42945319 (-)
G145553 NA non-coding downstream 40814 42896465 ~ 42943595 (-)
G145573 NA non-coding downstream 50089 42932912 ~ 42934320 (-)
G145097 NA non-coding downstream 216465 42767717 ~ 42767944 (-)
G145603 NA non-coding upstream 56296 43042847 ~ 43076675 (-)
G145609 NA non-coding upstream 59788 43046339 ~ 43058386 (-)
G145604 NA non-coding upstream 110397 43096948 ~ 43097815 (-)
G145669 NA non-coding upstream 113930 43100481 ~ 43100709 (-)
G145678 NA non-coding upstream 132824 43119375 ~ 43119711 (-)
G145010 NA other downstream 277130 42706818 ~ 42707279 (-)
LOC110489860 LOC106605053 other downstream 1253987 41714269 ~ 41730507 (-)
G142918 NA other downstream 2120688 40863214 ~ 40863721 (-)
LOC110489653 LOC106605072 other downstream 2743005 40224622 ~ 40298333 (-)
G141363 LOC106605077 other downstream 3218936 39763933 ~ 39765473 (-)
G145767 NA other upstream 284166 43270717 ~ 43272516 (-)
LOC110490183 LOC106605015 other upstream 386289 43372725 ~ 43392160 (-)
LOC110490298 LOC106605170 other upstream 789512 43776063 ~ 43783884 (-)
LOC110490352 NA other upstream 1448239 44434790 ~ 44464449 (-)
LOC110490449 scmh1 other upstream 1585397 44571948 ~ 44606865 (-)

Expression


Co-expression Network