LOC100301866 (LOC106584110)


Basic Information

Item Value
gene id LOC100301866
gene name LOC106584110
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43025400 ~ 43042479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933381.1
TCAAAAGGACAGACAATGTCTTCTCAGTTTCACCACGCTCACCACTGGGTCTGCGTCGCACCAATCAGAGGGTGTCACAGACACAGAGAATTTTCCATTTCAGTTATAAGTTCCAGTCATCTCCTGGGATTTCTTTTAGGTAGCATTCTTTGTTTTTGCCAAGGCCCGTATGCGTCCTTCAGAAATGTGCAAAACCCTTGTGTCCTGATTCAACAGACACTTATCATGTGGGTTGTACCAGAGCTGGTAGGCCAGGCCCTGGCAACAGTGCTGATGCTTGTCTCCCTGCACTGGTTTGTCTTCCTACTCAACCTGCCTGTGGCCGCCTGGAACATGTACAGGGTTTGGAAGGTGCCCATGGGAAACATGGGGGTGTTTGACCCCACTGAAATCCACAACCGGGGACAACTAAAGTCTCACATGAAAGAGTCCATGATCAAACTCGGCTTCCACCTGCTCTGCTTCTTCATCTACCTGTACAGCATGATCCTGGCACTGATCAACGATTGAGATCCCCATGGCCGTTTTAATCCAATCGGCCAAATCACAAACTATTCAGAATGTGGTGTTCAATATGTCCTGGTCCTCAGCTCAGCTGAAGTCACCTGACACTTCAGCTGACACTCCCCTTGGACACCTAATCATTGctcagccccccccctcccctccattaCGTACTTCTGTGTTCTCATAACTGCCCTGGaattgtgtgcgtgcgtgctttcGTTCAGCCTGTGTCCAACAATGCTGTCCATGCACGGCTCCTCTGGGCAGATGGAAAACATGACAATCATACAGGCTAGATGGTGCATACGATTGGCTAACATATTTTCAGCCAAGAACAACAGCTAGCACATCCTCTTGCAGCCTGCCAAACATCATCTTTGATATGTCAATGCCATATTTGATTGTCATATTTATTTTTGTCTCTTGTCAACATGCTGGAAAATCCTTAAATCCTTGAATATCCTTTGCAGAATACTAACCTGTGTTTTGGCGATTTATTTCTATATTTTCTTGGTCTCTTAACATCAATAAGTTGTAGATCTGCTGCTGAAAGGTGCACATTTGATTGGTATTATAAAATAGTGTTCTCAGGGGAATACATGCACCTGGATTGGATTTGTATCCGATTTTGCATCACTCGACTGTGTATCAATGGGCAATATAACCTCGATTCAATCCGTAGCACTGAAGAGCAATTTCATTGaaggtaatttccaattgagctGATATGTAAGTCTTTAAATTTGTGTAGTGCTTCAGCTTGAATCAAATCCCATGTCTGTATTATAGTTGTATTACATTTCACTATGTATGACAGAAGCACATTTACTACACATCACTATGTATGTTGTTTGAGAATGACCATGTTCCAGCCAAATGTATTTCTCCATGGGGAAAGGGTGCGTGTTCAGATTGTATTAAATCAAACTAAAATTACTTGTTTTTTGTGCTTTTGAAAATAATTTGTGGGGTTTCTTAAATAAACTTGAAAGAGAACAA
>XM_036933384.1
ATGAATGGCCAATACACACAATAGAATGATTGGAAAGGTGATTCCCCACAGTCAAagtcctgcaataagagctaAGAATGTTATGGATGTTAAACTGGTGCAAAACCCTTGTGTCCTGATTCAACAGACACTTATCATGTGGGTTGTACCAGAGCTGGTAGGCCAGGCCCTGGCAACAGTGCTGATGCTTGTCTCCCTGCACTGGTTTGTCTTCCTACTCAACCTGCCTGTGGCCGCCTGGAACATGTACAGGGTTTGGAAGGTGCCCATGGGAAACATGGGGGTGTTTGACCCCACTGAAATCCACAACCGGGGACAACTAAAGTCTCACATGAAAGAGTCCATGATCAAACTCGGCTTCCACCTGCTCTGCTTCTTCATCTACCTGTACAGCATGATCCTGGCACTGATCAACGATTGAGATCCCCATGGCCGTTTTAATCCAATCGGCCAAATCACAAACTATTCAGAATGTGGTGTTCAATATGTCCTGGTCCTCAGCTCAGCTGAAGTCACCTGACACTTCAGCTGACACTCCCCTTGGACACCTAATCATTGctcagccccccccctcccctccattaCGTACTTCTGTGTTCTCATAACTGCCCTGGaattgtgtgcgtgcgtgctttcGTTCAGCCTGTGTCCAACAATGCTGTCCATGCACGGCTCCTCTGGGCAGATGGAAAACATGACAATCATACAGGCTAGATGGTGCATACGATTGGCTAACATATTTTCAGCCAAGAACAACAGCTAGCACATCCTCTTGCAGCCTGCCAAACATCATCTTTGATATGTCAATGCCATATTTGATTGTCAT
>NM_001160695.2
GAATGCGGAAGAAAAAAGATGGAGGCGGCTGTGTTCATTCTATCGCTGGTCGACTGCTGTGCTTTGATTTTTCTGGCGGTGTACTTCGTAATTACCCTCTCCGATCTAGAATGTGACTACATCAATGCACGAGCCTGCTGTTCGAAGTTAAACAGATGGGTTGTACCAGAGCTGGTAGGCCAGGCCCTGGCAACAGTGCTGATGCTTGTCTCCCTGCACTGGTTTGTCTTCCTACTCAACCTGCCTGTGGCCGCCTGGAACATGTACAGGGTTTGGAAGGTGCCCATGGGAAACATGGGGGTGTTTGACCCCACTGAAATCCACAACCGGGGACAACTAAAGTCTCACATGAAAGAGTCCATGATCAAACTCGGCTTCCACCTGCTCTGCTTCTTCATCTACCTGTACAGCATGATCCTGGCACTGATCAACGATTGAGATCCCCATGGCCGTTTTAATCCAATCGGCCAAATCACAAACTATTCAGAATGTGGTGTTCAATATGTCCTGGTCCTCAGCTCAGCTGAAGTCACCTGACACTTCAGCTGACACTCCCCTTGGACACCTAATCATTGctcagccccccccctcccctccattaCGTACTTCTGTGTTCTCATAACTGCCCTGGaattgtgtgcgtgcgtgctttcGTTCAGCCTGTGTCCAACAATGCTGTCCATGCACGGCTCCTCTGGGCAGATGGAAAACATGACAATCATACAGGCTAGATGGTGCATACGATTGGCTAACATATTTTCAGCCAAGAACAACAGCTAGCACATCCTCTTGCAGCCTGCCAAACATCATCTTTGATATGTCAATGCCATATTTGATTGTCATATTTATTTTTGTCTCTTGTCAACATGCTGGAAAATCCTTAAATCCTTGAATATCCTTTGCAGAATACTAACCTGTGTTTTGGCGATTTATTTCTATATTTTCTTGGTCTCTTAACATCAATAAGTTGTAGATCTGCTGCTGAAAGGTGCACATTTGATTGGTATTATAAAATAGTGTTCTCAGGGGAATACATGCACCTGGATTGGATTTGTATCCGATTTTGCATCACTCGACTGTGTATCAATGGGCAATATAACCTCGATTCAATCCGTAGCACTGAAGAGCAATTTCATTGaaggtaatttccaattgagctGATATGTAAGTCTTTAAATTTGTGTAGTGCTTCAGCTTGAATCAAATCCCATGTCTGTATTATAGTTGTATTACATTTCACTATGTATGACAGAAGCACATTTACTACACATCACTATGTATGTTGTTTGAGAATGACCATGTTCCAGCCAAATGTATTTCTCCATGGGGAAAGGGTGCGTGTTCAGATTGTATTAAATCAAACTAAAATTACTTGTTTTTTGTGCTTTTGAAAATAATTTGTGGGGTTTCTTAAATAAACTTGAAAGAG
>XM_021617706.2
TTAAACAGAGTAAGCACAGTTGTCATGGTGGGTTGTACCAGAGCTGGTAGGCCAGGCCCTGGCAACAGTGCTGATGCTTGTCTCCCTGCACTGGTTTGTCTTCCTACTCAACCTGCCTGTGGCCGCCTGGAACATGTACAGGGTTTGGAAGGTGCCCATGGGAAACATGGGGGTGTTTGACCCCACTGAAATCCACAACCGGGGACAACTAAAGTCTCACATGAAAGAGTCCATGATCAAACTCGGCTTCCACCTGCTCTGCTTCTTCATCTACCTGTACAGCATGATCCTGGCACTGATCAACGATTGAGATCCCCATGGCCGTTTTAATCCAATCGGCCAAATCACAAACTATTCAGAATGTGGTGTTCAATATGTCCTGGTCCTCAGCTCAGCTGAAGTCACCTGACACTTCAGCTGACACTCCCCTTGGACACCTAATCATTGctcagccccccccctcccctccattaCGTACTTCTGTGTTCTCATAACTGCCCTGGaattgtgtgcgtgcgtgctttcGTTCAGCCTGTGTCCAACAATGCTGTCCATGCACGGCTCCTCTGGGCAGATGGAAAACATGACAATCATACAGGCTAGATGGTGCATACGATTGGCTAACATATTTTCAGCCAAGAACAACAGCTAGCACATCCTCTTGCAGCCTGCCAAACATCATCTTTGATATGTCAATGCCATATTTGATTGTCAT
>XM_021617697.2
TATATAGTTTTGCTTGTACACGCAGCTAGCAAGCTCTCGAGAACCCAGGGGCATAGCCCACCTTTACGGCTTTTGGTTAAAGGTGTAGACCACAACTGGCTCACTGTAAACTATAATCCCGACACTGTTTTAACGGTTCGAAACATACAATCTCGTTTGCGATAAGGTTTTGGAAACATTTGTGACTTAACTTTCACATTAGCAATAAATCATATTTCAAATTCCAAAAGATACATTTGTGAATCGCAAATCGAGCATCACCGGGCTACATTTTGGTGTGCCGACGTTTGACAATGTTCTTGGATTTCGTTTTAAGTTAGTTATATACGGCAGAGCACCCAGCTAATAAAGCGAGATATCCCACTTTGTTACCCATTCCACAAAGCCGGGAGGCAGCCTGCGGTCAAAACGAGTGCAATCATTTTTACAAGGATAAACGCCCCCTACCGGGTCAACCGGGTGAGCTAAATCGAACTCCCTccattggatttttttttttttttacacagcaGGGTGTAACTTTTAGAAACTGTACATGGGTTGTACCAGAGCTGGTAGGCCAGGCCCTGGCAACAGTGCTGATGCTTGTCTCCCTGCACTGGTTTGTCTTCCTACTCAACCTGCCTGTGGCCGCCTGGAACATGTACAGGGTTTGGAAGGTGCCCATGGGAAACATGGGGGTGTTTGACCCCACTGAAATCCACAACCGGGGACAACTAAAGTCTCACATGAAAGAGTCCATGATCAAACTCGGCTTCCACCTGCTCTGCTTCTTCATCTACCTGTACAGCATGATCCTGGCACTGATCAACGATTGAGATCCCCATGGCCGTTTTAATCCAATCGGCCAAATCACAAACTATTCAGAATGTGGTGTTCAATATGTCCTGGTCCTCAGCTCAGCTGAAGTCACCTGACACTTCAGCTGACACTCCCCTTGGACACCTAATCATTGctcagccccccccctcccctccattaCGTACTTCTGTGTTCTCATAACTGCCCTGGaattgtgtgcgtgcgtgctttcGTTCAGCCTGTGTCCAACAATGCTGTCCATGCACGGCTCCTCTGGGCAGATGGAAAACATGACAATCATACAGGCTAGATGGTGCATACGATTGGCTAACATATTTTCAGCCAAGAACAACAGCTAGCACATCCTCTTGCAGCCTGCCAAACATCATCTTTGATATGTCAATGCCATATTTGATTGTCAT

Function

NR:

description
PREDICTED: cornichon homolog 4 isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20368 CNIH, ERV14; protein cornichon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933381.1 False 1506 mRNA 0.43 5 43025400 43042479
XM_036933384.1 False 826 mRNA 0.48 5 43025811 43041888
NM_001160695.2 False 1429 mRNA 0.43 5 43031376 43042474
XM_021617706.2 False 715 mRNA 0.50 4 43032039 43041888
XM_021617697.2 True 1223 mRNA 0.46 4 43032083 43041888

Neighbor

gene id symbol gene type direction distance location
LOC110490064 LOC106605040 coding upstream 47396 42975400 ~ 42978004 (+)
LOC110490056 LOC106605039 coding upstream 50246 42971015 ~ 42975154 (+)
LOC110501569 mms22l coding upstream 114657 42878213 ~ 42910743 (+)
LOC110533774 NA coding upstream 148037 42876224 ~ 42877363 (+)
LOC110490029 LOC106605030 coding upstream 342051 42664424 ~ 42683349 (+)
LOC110490122 LOC106605034 coding downstream 48559 43091038 ~ 43097854 (+)
LOC110490166 LOC106605016 coding downstream 228187 43270666 ~ 43275284 (+)
LOC110490176 NA coding downstream 308648 43351127 ~ 43353661 (+)
LOC110501584 NA coding downstream 509103 43551582 ~ 43558937 (+)
LOC110490199 NA coding downstream 527811 43570290 ~ 43596359 (+)
G145271 NA non-coding upstream 2196 43022983 ~ 43023204 (+)
G145224 NA non-coding upstream 76199 42948921 ~ 42949201 (+)
G145211 NA non-coding upstream 92190 42930102 ~ 42933210 (+)
G145191 NA non-coding upstream 129634 42895432 ~ 42895766 (+)
G145045 NA non-coding upstream 258982 42766106 ~ 42766418 (+)
G145310 NA non-coding downstream 46335 43088814 ~ 43089105 (+)
G145313 NA non-coding downstream 55460 43097939 ~ 43098562 (+)
G145315 NA non-coding downstream 56563 43099042 ~ 43099255 (+)
G145317 NA non-coding downstream 62777 43105256 ~ 43105481 (+)
G145324 NA non-coding downstream 68530 43111009 ~ 43111274 (+)
G144661 NA other upstream 459370 42510330 ~ 42566030 (+)
G143938 LOC106605049 other upstream 1056083 41968374 ~ 41969317 (+)
LOC110489834 eny2 other upstream 1483809 41539240 ~ 41541654 (+)
G139179 NA other upstream 4973656 38051359 ~ 38051744 (+)
G139101 NA other upstream 5081388 37943742 ~ 37944012 (+)
G146054 LOC100136012 other downstream 688393 43730872 ~ 43731218 (+)
G146091 NA other downstream 726228 43768707 ~ 43769162 (+)
G146114 NA other downstream 756925 43799404 ~ 43799853 (+)
G146165 NA other downstream 844117 43886596 ~ 43889609 (+)
G146226 NA other downstream 954301 43996780 ~ 43997065 (+)

Expression


Co-expression Network