LOC110490122 (LOC106605034)


Basic Information

Item Value
gene id LOC110490122
gene name LOC106605034
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43091038 ~ 43097854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563309.2
CGGCGTCTTTAATGACGTAATCGCTCAGATTGCACGCTGCTGACGTGTATGTAGGGAAGTAGCAAgctggctacctagctagctagcaactttaGCGTTATTTTCATTGGATATGTGCAGCCAGTGACAGCTCATAATGGGAATAATAGCCAACTAATTGAAATAATTGGCATCAGTAGAGAAATCGGAGCAGATTACACAGAGAAGGAATTTGCCCTGAAGTGGATTGATTCCTTCAAGAGCCATGGGCAAACGGAGGATGCCAGACCTGTATAGGGCCCCCTTCCCCCTCTACACAATCAAAGTGGACCCCAAAACAGGATGGGTGATCACTGCAGGAGGGGGAGGCGGTTCCAAGACAGGCATAAAGAATGCAGTGCACTTCCTGGGTTTGGAGTTGGTAGGAGACCAGCACTGTGCCACCCTGGTGCACTCTCATGACACAGACACGCGTGCCACCATGAACCTGGCAATAGGCGGGGACGTGATCGCCGCAGGGCAGGACGGCAGATGCAGCCTCATGCGCTTCAGACAACGCCAGCCCAGGGGCAAGGCCGCAGCCAAAGACGCAGGGGGTGGCAGTGAGCAGGGTGCAGCTAGGAGACGAGCTGGGAAAGGGGGTAAGGGTAGTGAGGGAGCTGCTGCTAGGGGCAATGTGTCTGAGATGAATGATAACACCACCCAGATCTCTGTTGACACGTTTGGGGAGGTGCAGTCGGACCTCAACCCCCAGGACCCCCTCCAGAAGTGTGTGAGGTTCAGTCCTGATCTCAGCCTCCTATTGACTGGCGGGACAGACGGACACATCAGAGTGTGGGAGTACCCCTCCTTAAAAGAGAAGTTGGACTTCAAAGCCCATGAGGGGGAAATTGAAGACTTGGACATCAGTCCGAATAACAAGCACCTTGTGACGGTGGGCCGGGACTTTGCCTGCAGTATATGGAGTGGCAACCAGCTAGCCATGAGCCTCTGTTGGCATGAGAAGATGCCTCAGATAGCAGCAAAGTCATACCGCTATATGTCTTGCAGGTTTGGAAAAGTCGAGGACCAGAAAGACACCCTGAGGCTCTACACCGTCCAGATCCCCCACAAACGAGACAGAAAACCTCCACAATGCTACCTCTCTAAATGGGACGGCCAGAATTTCCTACCCATGCTGACGAACCCCTGCGGCACTGAGGTCATCTCCACCCTGGCTGTCAGTGACTCTGGAACTTTTCTCGGCCTTGGGACAGTGACGGGATCAGTAGCAATCTATGTCGCCTTTTCACTACagAAGTTGTACTATGTGCAGGAGTGCCACGGCATTGTGGTGACCGATCTGGCTTTCCTGCCTGACACTCCCAAAGGCCAGAGCCTCAAAGGGAACAACGAGGCAGCCATGTTGAGTGTGGCTGTGGACAGCCGCTGTCAGATGCACACGGTACGAAACCGAAGATCCTTCCCTATCTGGCTGGTGCTGTTCTTCTGTGGCCTCATGGTGGTGGGAGCCATCCTGCTCCTGCAGCACCTCTTCCCAGGATTCATTTAGACATTGACGGGGATGTTAATTGGAGGGAGAATGAAGGAATCCCAGACCGCCTTACAATCATCTTCAACAACCACAACCTCTGAGGAACTCCCCTGACGCAACTCAACCCTGGAACATGCATCCATCTCCTACCTATAGCCATCTTACCACACTTACCGAACCGTGGAACATTTTAACCACACTTGCCCAACCCTGGACTACATCTACTAGAGCCATTTACCCACTCTTAACTCTATACTCCCAACCCAACAACATTCCCTATATCAATGACTATACCCTTAACCAATATTTGTATCCCCCATCCTTCCCTGTCACCCCTAGACCTGATTCAGGAGAGCCCAGTGAACCATCCTTGCTCCTTCCACCCACAATTCTGCAAGACTCAAGaatttctctttttttcttgaTCTGTATCAATCAGTCATAATCTTTTTGATTTTATACCATGGTGGGGAGTTAAGGGCTCAGCTTCAGTTCTATATCATCATAAATGTGCAAGGGGTGGGGCCTTTTTATCGTAGATATTTAATAAAATGTAAAATTTATAAATATAAAATGTGAAtcatt
>XM_021563319.2
CGGCGTCTTTAATGACGTAATCGCTCAGATTGCACGCTGCTGACGTGTATGTAGGGAAGTAGCAAgctggctacctagctagctagcaactttaGCGTTATTTTCATTGGATATGTGCAGCCAGTGACAGCTCATAATGGGAATAATAGCCAACTAATTGAAATAATTGGCATCAGTAGAGAAATCGGAGCAGATTACACAGAGAAGGAATTTGCCCTGAAGTGGATTGATTCCTTCAAGAGCCATGGGCAAACGGAGGATGCCAGACCTGTATAGGGCCCCCTTCCCCCTCTACACAATCAAAGTGGACCCCAAAACAGGATGGGTGATCACTGCAGGAGGGGGAGGCGGTTCCAAGACAGGCATAAAGAATGCAGTGCACTTCCTGGGTTTGGAGTTGGTAGGAGACCAGCACTGTGCCACCCTGGTGCACTCTCATGACACAGACACGCGTGCCACCATGAACCTGGCAATAGGCGGGGACGTGATCGCCGCAGGGCAGGACGGCAGATGCAGCCTCATGCGCTTCAGACAACGCCAGCCCAGGGGCAAGGCCGCAGCCAAAGACGGGGGTGGCAGTGAGCAGGGTGCAGCTAGGAGACGAGCTGGGAAAGGGGGTAAGGGTAGTGAGGGAGCTGCTGCTAGGGGCAATGTGTCTGAGATGAATGATAACACCACCCAGATCTCTGTTGACACGTTTGGGGAGGTGCAGTCGGACCTCAACCCCCAGGACCCCCTCCAGAAGTGTGTGAGGTTCAGTCCTGATCTCAGCCTCCTATTGACTGGCGGGACAGACGGACACATCAGAGTGTGGGAGTACCCCTCCTTAAAAGAGAAGTTGGACTTCAAAGCCCATGAGGGGGAAATTGAAGACTTGGACATCAGTCCGAATAACAAGCACCTTGTGACGGTGGGCCGGGACTTTGCCTGCAGTATATGGAGTGGCAACCAGCTAGCCATGAGCCTCTGTTGGCATGAGAAGATGCCTCAGATAGCAGCAAAGTCATACCGCTATATGTCTTGCAGGTTTGGAAAAGTCGAGGACCAGAAAGACACCCTGAGGCTCTACACCGTCCAGATCCCCCACAAACGAGACAGAAAACCTCCACAATGCTACCTCTCTAAATGGGACGGCCAGAATTTCCTACCCATGCTGACGAACCCCTGCGGCACTGAGGTCATCTCCACCCTGGCTGTCAGTGACTCTGGAACTTTTCTCGGCCTTGGGACAGTGACGGGATCAGTAGCAATCTATGTCGCCTTTTCACTACagAAGTTGTACTATGTGCAGGAGTGCCACGGCATTGTGGTGACCGATCTGGCTTTCCTGCCTGACACTCCCAAAGGCCAGAGCCTCAAAGGGAACAACGAGGCAGCCATGTTGAGTGTGGCTGTGGACAGCCGCTGTCAGATGCACACGGTACGAAACCGAAGATCCTTCCCTATCTGGCTGGTGCTGTTCTTCTGTGGCCTCATGGTGGTGGGAGCCATCCTGCTCCTGCAGCACCTCTTCCCAGGATTCATTTAGACATTGACGGGGATGTTAATTGGAGGGAGAATGAAGGAATCCCAGACCGCCTTACAATCATCTTCAACAACCACAACCTCTGAGGAACTCCCCTGACGCAACTCAACCCTGGAACATGCATCCATCTCCTACCTATAGCCATCTTACCACACTTACCGAACCGTGGAACATTTTAACCACACTTGCCCAACCCTGGACTACATCTACTAGAGCCATTTACCCACTCTTAACTCTATACTCCCAACCCAACAACATTCCCTATATCAATGACTATACCCTTAACCAATATTTGTATCCCCCATCCTTCCCTGTCACCCCTAGACCTGATTCAGGAGAGCCCAGTGAACCATCCTTGCTCCTTCCACCCACAATTCTGCAAGACTCAAGaatttctctttttttcttgaTCTGTATCAATCAGTCATAATCTTTTTGATTTTATACCATGGTGGGGAGTTAAGGGCTCAGCTTCAGTTCTATATCATCATAAATGTGCAAGGGGTGGGGCCTTTTTATCGTAGATATTTAATAAAATGTAAAATTTATAAATATAAAATGTGAAtcatt
>XM_036949040.1
GATTTTTTTCGGAATAAACGTGAGAAGGAATTTGCCCTGAAGTGGATTGATTCCTTCAAGAGCCATGGGCAAACGGAGGATGCCAGACCTGTATAGGGCCCCCTTCCCCCTCTACACAATCAAAGTGGACCCCAAAACAGGATGGGTGATCACTGCAGGAGGGGGAGGCGGTTCCAAGACAGGCATAAAGAATGCAGTGCACTTCCTGGGTTTGGAGTTGGTAGGAGACCAGCACTGTGCCACCCTGGTGCACTCTCATGACACAGACACGCGTGCCACCATGAACCTGGCAATAGGCGGGGACGTGATCGCCGCAGGGCAGGACGGCAGATGCAGCCTCATGCGCTTCAGACAACGCCAGCCCAGGGGCAAGGCCGCAGCCAAAGACGCAGGGGGTGGCAGTGAGCAGGGTGCAGCTAGGAGACGAGCTGGGAAAGGGGGTAAGGGTAGTGAGGGAGCTGCTGCTAGGGGCAATGTGTCTGAGATGAATGATAACACCACCCAGATCTCTGTTGACACGTTTGGGGAGGTGCAGTCGGACCTCAACCCCCAGGACCCCCTCCAGAAGTGTGTGAGGTTCAGTCCTGATCTCAGCCTCCTATTGACTGGCGGGACAGACGGACACATCAGAGTGTGGGAGTACCCCTCCTTAAAAGAGAAGTTGGACTTCAAAGCCCATGAGGGGGAAATTGAAGACTTGGACATCAGTCCGAATAACAAGCACCTTGTGACGGTGGGCCGGGACTTTGCCTGCAGTATATGGAGTGGCAACCAGCTAGCCATGAGCCTCTGTTGGCATGAGAAGATGCCTCAGATAGCAGCAAAGTCATACCGCTATATGTCTTGCAGGTTTGGAAAAGTCGAGGACCAGAAAGACACCCTGAGGCTCTACACCGTCCAGATCCCCCACAAACGAGACAGAAAACCTCCACAATGCTACCTCTCTAAATGGGACGGCCAGAATTTCCTACCCATGCTGACGAACCCCTGCGGCACTGAGGTCATCTCCACCCTGGCTGTCAGTGACTCTGGAACTTTTCTCGGCCTTGGGACAGTGACGGGATCAGTAGCAATCTATGTCGCCTTTTCACTACagAAGTTGTACTATGTGCAGGAGTGCCACGGCATTGTGGTGACCGATCTGGCTTTCCTGCCTGACACTCCCAAAGGCCAGAGCCTCAAAGGGAACAACGAGGCAGCCATGTTGAGTGTGGCTGTGGACAGCCGCTGTCAGATGCACACGGTACGAAACCGAAGATCCTTCCCTATCTGGCTGGTGCTGTTCTTCTGTGGCCTCATGGTGGTGGGAGCCATCCTGCTCCTGCAGCACCTCTTCCCAGGATTCATTTAGACATTGACGGGGATGTTAATTGGAGGGAGAATGAAGGAATCCCAGACCGCCTTACAATCATCTTCAACAACCACAACCTCTGAGGAACTCCCCTGACGCAACTCAACCCTGGAACATGCATCCATCTCCTACCTATAGCCATCTTACCACACTTACCGAACCGTGGAACATTTTAACCACACTTGCCCAACCCTGGACTACATCTACTAGAGCCATTTACCCACTCTTAACTCTATACTCCCAACCCAACAACATTCCCTATATCAATGACTATACCCTTAACCAATATTTGTATCCCCCATCCTTCCCTGTCACCCCTAGACCTGATTCAGGAGAGCCCAGTGAACCATCCTTGCTCCTTCCACCCACAATTCTGCAAGACTCAAGaatttctctttttttcttgaTCTGTATCAATCAGTCATAATCTTTTTGATTTTATACCATGGTGGGGAGTTAAGGGCTCAGCTTCAGTTCTATATCATCATAAATGTGCAAGGGGTGGGGCCTTTTTATCGTAGATATTTAATAAAATGTAAAATTTATAAATATAAAATGTGAAtcatt
>XM_036949046.1
ACGTCACTTTTCATCCTCAGCTGACAGTTTTCCCAGGAAAACTAGCAGTATCTTCTCAATGGAGCAGTGTGGATAAAGGTACAATTTGGAGTACAGTGGCATATCCCATCCCTGCATTGAGAGAAGGAATTTGCCCTGAAGTGGATTGATTCCTTCAAGAGCCATGGGCAAACGGAGGATGCCAGACCTGTATAGGGCCCCCTTCCCCCTCTACACAATCAAAGTGGACCCCAAAACAGGATGGGTGATCACTGCAGGAGGGGGAGGCGGTTCCAAGACAGGCATAAAGAATGCAGTGCACTTCCTGGGTTTGGAGTTGGTAGGAGACCAGCACTGTGCCACCCTGGTGCACTCTCATGACACAGACACGCGTGCCACCATGAACCTGGCAATAGGCGGGGACGTGATCGCCGCAGGGCAGGACGGCAGATGCAGCCTCATGCGCTTCAGACAACGCCAGCCCAGGGGCAAGGCCGCAGCCAAAGACGCAGGGGGTGGCAGTGAGCAGGGTGCAGCTAGGAGACGAGCTGGGAAAGGGGGTAAGGGTAGTGAGGGAGCTGCTGCTAGGGGCAATGTGTCTGAGATGAATGATAACACCACCCAGATCTCTGTTGACACGTTTGGGGAGGTGCAGTCGGACCTCAACCCCCAGGACCCCCTCCAGAAGTGTGTGAGGTTCAGTCCTGATCTCAGCCTCCTATTGACTGGCGGGACAGACGGACACATCAGAGTGTGGGAGTACCCCTCCTTAAAAGAGAAGTTGGACTTCAAAGCCCATGAGGGGGAAATTGAAGACTTGGACATCAGTCCGAATAACAAGCACCTTGTGACGGTGGGCCGGGACTTTGCCTGCAGTATATGGAGTGGCAACCAGCTAGCCATGAGCCTCTGTTGGCATGAGAAGATGCCTCAGATAGCAGCAAAGTCATACCGCTATATGTCTTGCAGGTTTGGAAAAGTCGAGGACCAGAAAGACACCCTGAGGCTCTACACCGTCCAGATCCCCCACAAACGAGACAGAAAACCTCCACAATGCTACCTCTCTAAATGGGACGGCCAGAATTTCCTACCCATGCTGACGAACCCCTGCGGCACTGAGGTCATCTCCACCCTGGCTGTCAGTGACTCTGGAACTTTTCTCGGCCTTGGGACAGTGACGGGATCAGTAGCAATCTATGTCGCCTTTTCACTACagAAGTTGTACTATGTGCAGGAGTGCCACGGCATTGTGGTGACCGATCTGGCTTTCCTGCCTGACACTCCCAAAGGCCAGAGCCTCAAAGGGAACAACGAGGCAGCCATGTTGAGTGTGGCTGTGGACAGCCGCTGTCAGATGCACACGGTACGAAACCGAAGATCCTTCCCTATCTGGCTGGTGCTGTTCTTCTGTGGCCTCATGGTGGTGGGAGCCATCCTGCTCCTGCAGCACCTCTTCCCAGGATTCATTTAGACATTGACGGGGATGTTAATTGGAGGGAGAATGAAGGAATCCCAGACCGCCTTACAATCATCTTCAACAACCACAACCTCTGAGGAACTCCCCTGACGCAACTCAACCCTGGAACATGCATCCATCTCCTACCTATAGCCATCTTACCACACTTACCGAACCGTGGAACATTTTAACCACACTTGCCCAACCCTGGACTACATCTACTAGAGCCATTTACCCACTCTTAACTCTATACTCCCAACCCAACAACATTCCCTATATCAATGACTATACCCTTAACCAATATTTGTATCCCCCATCCTTCCCTGTCACCCCTAGACCTGATTCAGGAGAGCCCAGTGAACCATCCTTGCTCCTTCCACCCACAATTCTGCAAGACTCAAGaatttctctttttttcttgaTCTGTATCAATCAGTCATAATCTTTTTGATTTTATACCATGGTGGGGAGTTAAGGGCTCAGCTTCAGTTCTATATCATCATAAATGTGCAAGGGGTGGGGCCTTTTTATCGTAGATATTTAATAAAATGTAAAATTTATAAATATAAAATGTGAAtcatt

Function

NR:

description
prolactin regulatory element-binding protein-like isoform X1

GO: NA

KEGG:

id description
K14003 PREB, SEC12; prolactin regulatory element-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563309.2 False 2098 mRNA 0.51 10 43091038 43097854
XM_021563319.2 False 2095 mRNA 0.51 10 43091038 43097854
XM_036949040.1 False 1918 mRNA 0.51 10 43091591 43097854
XM_036949046.1 True 2017 mRNA 0.51 10 43092026 43097854

Neighbor

gene id symbol gene type direction distance location
LOC100301866 LOC106584110 coding upstream 48559 43025400 ~ 43042479 (+)
LOC110490064 LOC106605040 coding upstream 113034 42975400 ~ 42978004 (+)
LOC110490056 LOC106605039 coding upstream 115884 42971015 ~ 42975154 (+)
LOC110501569 mms22l coding upstream 180295 42878213 ~ 42910743 (+)
LOC110533774 NA coding upstream 213675 42876224 ~ 42877363 (+)
LOC110490166 LOC106605016 coding downstream 172812 43270666 ~ 43275284 (+)
LOC110490176 NA coding downstream 253273 43351127 ~ 43353661 (+)
LOC110501584 NA coding downstream 453728 43551582 ~ 43558937 (+)
LOC110490199 NA coding downstream 472436 43570290 ~ 43596359 (+)
LOC110501593 pigv coding downstream 499460 43597314 ~ 43599427 (+)
G145310 NA non-coding upstream 1933 43088814 ~ 43089105 (+)
G145271 NA non-coding upstream 67834 43022983 ~ 43023204 (+)
G145224 NA non-coding upstream 141837 42948921 ~ 42949201 (+)
G145211 NA non-coding upstream 157828 42930102 ~ 42933210 (+)
G145191 NA non-coding upstream 195272 42895432 ~ 42895766 (+)
G145313 NA non-coding downstream 85 43097939 ~ 43098562 (+)
G145315 NA non-coding downstream 1188 43099042 ~ 43099255 (+)
G145317 NA non-coding downstream 7402 43105256 ~ 43105481 (+)
G145324 NA non-coding downstream 13155 43111009 ~ 43111274 (+)
G145328 NA non-coding downstream 20765 43118619 ~ 43118856 (+)
G144661 NA other upstream 525008 42510330 ~ 42566030 (+)
G143938 LOC106605049 other upstream 1121721 41968374 ~ 41969317 (+)
LOC110489834 eny2 other upstream 1549447 41539240 ~ 41541654 (+)
G139179 NA other upstream 5039294 38051359 ~ 38051744 (+)
G139101 NA other upstream 5147026 37943742 ~ 37944012 (+)
G146054 LOC100136012 other downstream 633018 43730872 ~ 43731218 (+)
G146091 NA other downstream 670853 43768707 ~ 43769162 (+)
G146114 NA other downstream 701550 43799404 ~ 43799853 (+)
G146165 NA other downstream 788742 43886596 ~ 43889609 (+)
G146226 NA other downstream 898926 43996780 ~ 43997065 (+)

Expression


Co-expression Network