LOC110490166 (LOC106605016)


Basic Information

Item Value
gene id LOC110490166
gene name LOC106605016
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43270666 ~ 43275284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563389.2
CTCTGGTTACCATGTGACAGAGATAAGTCACATGACCAAGGCTCTGCGTACAGGAAATAGAGACCAGCAAGAGAAAATAGAAAGAAAGTAGCGACAGTGAGGAATTTGCACCAATAAAGTGGGTTTACTGACTGCAAAAGTGAAACGTTGAGCAGAGATGAAGCTGTTGCCAGTGATTTCCCTCCTGGCATTAACCTCAGCTACCTCTGCTTTGGACAATGGTTTGATGAGGACCCCACCCATGGGATGGATGTCCTGGGAGCGTTTTCGCTGTAATATCGACTGTGAGAATGATCCCAAGAACTGCATCAGTGAGAATCTCTTCAGAGACATGGCAGACAGACTGGCTGAGGATGGGTGGAAAGAGATGGGATATGATCATGTCATGATAGATGACTGTTGGTCCTCCATGCTCCGGGATAAAGATGGACGGCTGCAGCCCGACCCACAAAGGTTCCCTGGGGGCATTGCCAAGCTGGCGAGGTACCTCCATGACCGCGGCCTGAAGCTGGGCATCTATGGGGACCTGGGCACACACACCTGTGGAGGGTACCCTGGCACCACGCTGGACAAGATTGATACTGATGCCCAGACGTTCGCTAGTTGGGGTGTGGACTTCCTGAAGTTGGATGGCTGTTACTCCAATGAAGAGGAGCAACAGAAGGGTTACCCTCTCATGTCCAAGGCTTTGAATGCAACAGGCCGTCCAATTGGCTACTCCTGTAGTTGGCCAGCCTATCGGGGTGGACTCCCTCCCAGTGTGAATTACACTCTGCTGGGGGAAATCTGTAACCTGTGGCGTAACTATGATGACATTCAGGACTCGTGGGACAGTGTACAAGACATTACAGACTGGTTCTTTGACAACCAGGAGATACTGCAGCCTGAAGCCGGCCCTGGACGCTGGAACGATCCTGACATGCTGATCATAGGAAACTTTGGCCTCAGTGTGGACCAATCACGCTCTCAGATGGCTCTTTGGGCGATCATGGCTGCACCTCTCATTATGTCCAACAACCTTCGAACCCTAAGCAGTGAGGCCAGGGCCATCCTGCAGAACGGTGCCGCCATCGCCATCAACCAGGACCCGATGGGCGTCCAGGGAAGACGCTTGCTACAGGAGAGGAGTCAGATTGAAGTGTACTGGCGGCCCCTCTCCCAGTCAGCCAGTGCTCTGGTGTTCCTCAGCCGTCGCCAGGACATGCCCTATCGCTACCACACCTCCCTGGCCAAGTTAAACTACACAGCAGGCAGCTACGAGGCTTATGACGTATTCACTGGGAAAACATTGAGTGGACTGTCTGCCGCCACAGAGTTCACCGTCTCCATCAACCCCTCAGGAGTCGTCATGTGGTACGTCTATCCCAAAATGCACTACGAGCATCCGCAGGATGATGGTAGATACCCCTACTTCCGACAGAAATACAGGATGTCCTCCTCGCTCCGCTTCCACAAGCCGAGGGTTGTGCCTCCTAGTCTGCTCTGAGGGGACGTGAAGTAAGCAAGCAGGAGGGCGAATCTGTTGTTTTAAGAAGTCCTCCATAAATCCAGATCCAATCAAAGATATTTGAATCAGGAAGAATATGGATATTTTTTTTGCGCTGTTGTGTTTTAACCCATATGTAATCTTGGCAACCCAGAACTTAAATCGTGCGCCAGCTACTTGGCTAAGGTCTTGGGGTAGCCGAAAGAGAAAAGATACTAGAACCAGTGGCGGAAACAGGTCGGCAGCTTCATCACCGTCTCTGTCTGCAACATTTTATGTTATGTGTGTCTGCCCACGAGAGATTAAACCATGTGTAATGTTTGAACATTTATAAAAAGTagattttg

Function

NR:

description
alpha-N-acetylgalactosaminidase-like

GO: NA

KEGG:

id description
K01204 NAGA; alpha-N-acetylgalactosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563389.2 True 1833 mRNA 0.51 9 43270666 43275284

Neighbor

gene id symbol gene type direction distance location
LOC110490122 LOC106605034 coding upstream 172812 43091038 ~ 43097854 (+)
LOC100301866 LOC106584110 coding upstream 228187 43025400 ~ 43042479 (+)
LOC110490064 LOC106605040 coding upstream 292662 42975400 ~ 42978004 (+)
LOC110490056 LOC106605039 coding upstream 295512 42971015 ~ 42975154 (+)
LOC110501569 mms22l coding upstream 359923 42878213 ~ 42910743 (+)
LOC110490176 NA coding downstream 75843 43351127 ~ 43353661 (+)
LOC110501584 NA coding downstream 276298 43551582 ~ 43558937 (+)
LOC110490199 NA coding downstream 295006 43570290 ~ 43596359 (+)
LOC110501593 pigv coding downstream 322030 43597314 ~ 43599427 (+)
LOC110490231 LOC106605011 coding downstream 355181 43630465 ~ 43651752 (+)
G145415 NA non-coding upstream 21380 43249037 ~ 43249286 (+)
G145411 NA non-coding upstream 26898 43243501 ~ 43243768 (+)
G145403 NA non-coding upstream 43915 43226252 ~ 43226751 (+)
G145402 NA non-coding upstream 44651 43225797 ~ 43226015 (+)
G145342 NA non-coding upstream 85322 43135470 ~ 43185344 (+)
G145420 NA non-coding downstream 34884 43310168 ~ 43359884 (+)
G145493 NA non-coding downstream 127175 43402459 ~ 43402945 (+)
G145508 NA non-coding downstream 150153 43425437 ~ 43425641 (+)
G145513 NA non-coding downstream 155427 43430711 ~ 43430935 (+)
G146039 NA non-coding downstream 431485 43706769 ~ 43715909 (+)
G144661 NA other upstream 704636 42510330 ~ 42566030 (+)
G143938 LOC106605049 other upstream 1301349 41968374 ~ 41969317 (+)
LOC110489834 eny2 other upstream 1729075 41539240 ~ 41541654 (+)
G139179 NA other upstream 5218922 38051359 ~ 38051744 (+)
G139101 NA other upstream 5326654 37943742 ~ 37944012 (+)
G146054 LOC100136012 other downstream 455588 43730872 ~ 43731218 (+)
G146091 NA other downstream 493423 43768707 ~ 43769162 (+)
G146114 NA other downstream 524120 43799404 ~ 43799853 (+)
G146165 NA other downstream 611312 43886596 ~ 43889609 (+)
G146226 NA other downstream 721496 43996780 ~ 43997065 (+)

Expression


Co-expression Network