LOC110490176


Basic Information

Item Value
gene id LOC110490176
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43351127 ~ 43353661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468674.2
TGAAACAATGCTACCGTTTGAAGGGTGGGCAGAGATGAGCACTGACAGGCACTGGCCATGCCCAAGTCCTGTGAATAAGCGCCAGGCCAGACACGCCCACAAGGATACCATGAGTCAGGAGACCAGTCCAATGTGTCAATGTTTTGACCTTTATATGACTTGTGTGGTGGTTTGCAATGACATGACCTGGGATCGAACCCCTAACCTTCCAATTTCAGGGCAGACTGTTTAACCACAAGGTCACTGAATGTTTTCTGCAAAAAAATAATACTGCTAATTTAAAACGTATCCgaaggagggaggatagaggaatgCCTAGCGATGGAGTTCAGTATATCTGTGTAAAGAGGACAGTATGTTATCTTCAGAGAAAAGCAACCAGAAACCAAGAACAGATAAAGCCTTTCTGTGACTCTGGGATTATAACTAACTATTTACTCATACAATTTAATTGGTTGGTGATAAACAAATTACAAACCTATCTGATTGGACCTGCATGATACTGTAGTATCACTTAACCTTTTGAAATTACAGGGCAGATgttgatgtacagtatataacccggAAAAGCTATAAACCCATGTGGTGAAATAGTTTAGGTGCTTGCTATAAGCAATATGGTGTAACTGCAGACCGCAATTAGGGGTGTTTTTTGAGGGTTATGGTGTTTCCAGTAAACGTTGGTGTGTGGTGTCAATGACACCTTGAATGGGTTGATCACTGAGGTCATTGACATGGGTATGATTCCAGAGTCATTACTGTAAACTGGTTTCGATTTCTATGTTTTTATCGGTGGCGCGATCATcatgacatcatttacagagctATTTAGCTATTTAGTCACTTTCAGATGAGGCGTGGCTCTAGAGTTACTGTCATTATTATTGGCTGATTACATTTTAGAACCTGGATGTAACTGCTGTAGGCTAGTTGGTAGTGGaatgacagggagacagacacacagacgtgAGAATCCGTCTCATTTCTGGCACAGGATGTTGTTGGAGAGTCATGCATTCTTACTTTCTATTTCTAAACCACCATGCCTGCATGCATAAAGAGACTCTTTTCGGTGGAAATCCCCAAGGGATTCTCAAAGGAGATTGTTTCCTGAAGCAGGAGTCTGGAATGCAGCAAACAAGTCTGGGCTCCCATTGGAATGTACACCTACTCCCATTTATATGCACACGCAGACACAAGCATGCatgtacatgtacacacacatatacacacacttgaAAACAGGTGGACACAAATGCATGTGTaggaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468674.2 True 1272 mRNA 0.42 2 43351127 43353661

Neighbor

gene id symbol gene type direction distance location
LOC110490166 LOC106605016 coding upstream 75843 43270666 ~ 43275284 (+)
LOC110490122 LOC106605034 coding upstream 253273 43091038 ~ 43097854 (+)
LOC100301866 LOC106584110 coding upstream 308648 43025400 ~ 43042479 (+)
LOC110490064 LOC106605040 coding upstream 373123 42975400 ~ 42978004 (+)
LOC110490056 LOC106605039 coding upstream 375973 42971015 ~ 42975154 (+)
LOC110501584 NA coding downstream 197921 43551582 ~ 43558937 (+)
LOC110490199 NA coding downstream 216629 43570290 ~ 43596359 (+)
LOC110501593 pigv coding downstream 243653 43597314 ~ 43599427 (+)
LOC110490231 LOC106605011 coding downstream 276804 43630465 ~ 43651752 (+)
LOC110490316 LOC106584327 coding downstream 593427 43947088 ~ 43950347 (+)
G145415 NA non-coding upstream 101841 43249037 ~ 43249286 (+)
G145411 NA non-coding upstream 107359 43243501 ~ 43243768 (+)
G145403 NA non-coding upstream 124376 43226252 ~ 43226751 (+)
G145402 NA non-coding upstream 125112 43225797 ~ 43226015 (+)
G145342 NA non-coding upstream 165783 43135470 ~ 43185344 (+)
G145493 NA non-coding downstream 48798 43402459 ~ 43402945 (+)
G145508 NA non-coding downstream 71776 43425437 ~ 43425641 (+)
G145513 NA non-coding downstream 77050 43430711 ~ 43430935 (+)
G146039 NA non-coding downstream 353108 43706769 ~ 43715909 (+)
G146042 LOC106605010 non-coding downstream 365695 43719356 ~ 43719858 (+)
G144661 NA other upstream 785097 42510330 ~ 42566030 (+)
G143938 LOC106605049 other upstream 1381810 41968374 ~ 41969317 (+)
LOC110489834 eny2 other upstream 1809536 41539240 ~ 41541654 (+)
G139179 NA other upstream 5299383 38051359 ~ 38051744 (+)
G139101 NA other upstream 5407115 37943742 ~ 37944012 (+)
G146054 LOC100136012 other downstream 377211 43730872 ~ 43731218 (+)
G146091 NA other downstream 415046 43768707 ~ 43769162 (+)
G146114 NA other downstream 445743 43799404 ~ 43799853 (+)
G146165 NA other downstream 532935 43886596 ~ 43889609 (+)
G146226 NA other downstream 643119 43996780 ~ 43997065 (+)

Expression


Co-expression Network