LOC110501593 (pigv)


Basic Information

Item Value
gene id LOC110501593
gene name pigv
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43597314 ~ 43599427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110501593
ATGCCTCCCTTTCAGGCTCTCCTAAATGCTGCAATCCCAGATCACGAAGCTGATGCATTCACTCCATGCGCAGAGGAGGAGCCTCTGCTTCTGGACCCTGCAGTGCAATGGTTTCTAGGGGGCCTTTCCCACTGGGATGCAGAGCATTTCCTCTTCATTGCTGAGAGGGGCTACCTGTGTGAGCACAACTATGCCTCCTTCCCCCTGTTCCCTGTAATACTGTGGGGGCTGCCCCTCAGTGGCTGTCTTACACTGCGTGGACGCCTGCTACTGGCTGTTGCCTTGGGTAACAGCGCCCTCTTCCTGCTGAGTGTGATAGCACTCTATGGACTCGGCCGTGTGGTACTGCAGGACTGCCGTCTTGCTCTAGTCTCCAGTTTGCTCTACTGTCTCACCCCTGCCAATGTCTTCATGATGGATGGTTACTAAGAGAGCCTGTTTGCTGCACTGACCTTTGGGGGGCCTCTTTCTCCTAGAGAGGATACACCCTCCGAGCCTGCCTGGCTCTGAGTATAGCCACTGCTGCACGAGCCAATGGACTTGTGAATGTAGGATTCTTGCTGTATCTGCCCCTGCAACAGGTGCTCTACAAGTACTGGGGACTGCGTAAGGACAATAAGGATACAACAAATGCCTACACTACACCTGGATCATCGCTCGTCTCCTGTTCACGGCTGCATTGGGCACAGCAGTTATTGCCCTCCCCTTCTTGGTCTTCCAGTAGTATGGGTACAGGGCGTTCTGTACACCCTCCCTCTCCTTGGAGCAGATTTCCCCTGCCCTCATCCAGCTTGCTGAGGATAAAGGCTACAGGGTCCCTGGCGAAAACGCACCCCCACCCCTCTGGTGCCTGCGACCCCTCCCCCTGCTCTACTCTCATATCCAGGATGTGTATTGGGATGTGGGCTTCCTGCTCTACTTCCAGCTTAAGGAGATACCCAACTTCCTGCTGGCGCTGCCCATGGCAACTCTGGACATGGTGGCAGCCTACATGTACTATAGGGATAACCCAGCCAGGTGTCTGAGACTGGGGCTGTGGGACAGAGGGGCAAACAAACGGCCAGACAAACCCACACCTGGATTTTACAGCCCCAGGGTGTTTTTATATGTGGTGCATGCTACAATGATCCTGGGATTTGGAACATTCTGCATGCATGTGCAGGTAAGGAACGAATCAGTGGAAAATATTTATGTAAGGGGATTTTAACAGGTTACACAAGAATGTCTTCTTGTACTTATCCCAATACCCCATTGTTCATTTACTGTCCTGCTGGAAGACATGCTCTATCCCCACGTGTTGGATTCTAGGGTACTTCATCTCCTATTGGCTTATGGGCCTGTAACTTCTTACAGTGGACTTGACCTGACACTTTCTATTGAAGACCTGATGTGTGCCCAAAATACTATTTGAGGGCAATAATAATAGCTCTGAAGCGTGTCCATATTTTCTGCCCGCTTCATAAATAGACAGTGCCATTTTAGATAGCAATTGGCTACTCACCTCTGTTAGTGTTAGGCAATAAGGTTCAAGCGTTTTATTTGCACTCCATCTCACTTTCAGAAAATTGCCTATTTTAATATTACCCCCCCCCGGATTTGCAATCCAGCATTGATGCACTAATTATTCCATTCACTTGAAAGTTCCATTCTATCAAATTGTATCTGGAAAAAGTACAGGGTGCAGTTTGTGCTTTTGAGTGCAGATGTTAATGACATTTTTTGTTTACTAAAGAGATATTGTGTAATAAAGCATCACAAATAATTTGCGTTTTTTGTTGATAGATTCTGCTTGCAGCATTTCAGCCATTGATTTCAGTACCAGAGACAGCAAGCCTTTCTAGTTGAAACGCCTAGAAAGTGAAAATCAAAAGTAAATGAAGCTAGCTAGCGAGCTTACTGAATTTAATACAGACCACGCATGTCTAGCTACTGTAGTTGACCTTCTGATAAAACTTGCATCATTACTCTAGAACATTACTAGCAAATGACATTGAAACTTGAAAAGGGGAGCAGTGCACATAACTATGGATAGTCTAAAAACAAACGGTCTAAACTCAAAGGAGAGTGTGCAAGGTTTATTTTAGAATGTATTGTTTTGAATTATAATGACCCAA

Function

symbol description
pigv Predicted to enable mannosyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of mannosyltransferase complex. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human PIGV (phosphatidylinositol glycan anchor biosynthesis class V).

NR:

description
GPI mannosyltransferase 2 isoform X2

GO: NA

KEGG:

id description
K07542 PIGV; GPI mannosyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110501593 True 2114 mRNA 0.47 1 43597314 43599427

Neighbor

gene id symbol gene type direction distance location
LOC110490199 NA coding upstream 955 43570290 ~ 43596359 (+)
LOC110501584 NA coding upstream 38377 43551582 ~ 43558937 (+)
LOC110490176 NA coding upstream 243653 43351127 ~ 43353661 (+)
LOC110490166 LOC106605016 coding upstream 322030 43270666 ~ 43275284 (+)
LOC110490122 LOC106605034 coding upstream 499460 43091038 ~ 43097854 (+)
LOC110490231 LOC106605011 coding downstream 31038 43630465 ~ 43651752 (+)
LOC110490316 LOC106584327 coding downstream 347661 43947088 ~ 43950347 (+)
LOC110490326 LOC106605007 coding downstream 355622 43955049 ~ 43960992 (+)
LOC110490388 LOC106604983 coding downstream 865547 44464974 ~ 44472924 (+)
LOC110490437 LOC106584212 coding downstream 951736 44551163 ~ 44553979 (+)
G145513 NA non-coding upstream 166379 43430711 ~ 43430935 (+)
G145508 NA non-coding upstream 171673 43425437 ~ 43425641 (+)
G145493 NA non-coding upstream 194369 43402459 ~ 43402945 (+)
G145420 NA non-coding upstream 237430 43310168 ~ 43359884 (+)
G145415 NA non-coding upstream 348028 43249037 ~ 43249286 (+)
G146039 NA non-coding downstream 107342 43706769 ~ 43715909 (+)
G146042 LOC106605010 non-coding downstream 119929 43719356 ~ 43719858 (+)
G146050 NA non-coding downstream 123436 43722863 ~ 43723100 (+)
G146043 NA non-coding downstream 124411 43723838 ~ 43724222 (+)
G146053 NA non-coding downstream 130094 43729521 ~ 43729792 (+)
G144661 NA other upstream 1031284 42510330 ~ 42566030 (+)
G143938 LOC106605049 other upstream 1627997 41968374 ~ 41969317 (+)
LOC110489834 eny2 other upstream 2055723 41539240 ~ 41541654 (+)
G139179 NA other upstream 5545570 38051359 ~ 38051744 (+)
G139101 NA other upstream 5653302 37943742 ~ 37944012 (+)
G146054 LOC100136012 other downstream 131445 43730872 ~ 43731218 (+)
G146091 NA other downstream 169280 43768707 ~ 43769162 (+)
G146114 NA other downstream 199977 43799404 ~ 43799853 (+)
G146165 NA other downstream 287169 43886596 ~ 43889609 (+)
G146226 NA other downstream 397353 43996780 ~ 43997065 (+)

Expression


Co-expression Network