LOC110490316 (LOC106584327)


Basic Information

Item Value
gene id LOC110490316
gene name LOC106584327
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43947088 ~ 43950347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563634.2
gctgttttcatgctaTCAATAGCGTTAGTGACTATCTGTGCTGCTAGCAACATttgatttcattttttttgcaaaCCTTTATTGACACCTGTCATATTCAACGGTGCtgcgcgttcgtaaattcatcagttattctgctctcTGGCACACTCAAACGAGAGAGTTTTGACATCGGCGTAGATAGACAACATTAATTTACGAATGCACCCTAAATCGACATTATTGATTGGACGATTAGGACCAATGGGAGTAGAGAACGAGATGTGACCAGTTGACTTTTGTGCTTCGTTCCTTTTTGTTGCGCTTTTGGTGCTGATGCAGGCAGTGAAGAAGGCGCGACCACACCACTTTGTAAGCATTTGAAGGCATAGCAACCCTCAGTACTCTGCTGAAATGGCATCCTCTGGAGAGATCCTGGTCAAGGAGTTGGACAAGCGTGCTTCAGGTCAAGCATTTGAGGTAATCTTGGCCCCCGATGCCAAGGGTGAAATCCCCCTACCTCCCccgaaggagaagaaggagatgTCCCTGGAGGAGATTCAGAAGAAACTGGAGGCTGCAGAGGAGAGACGCAAGAGTCATGAGGCAGAGGTGCTGAAGCACTTAGCTGAGAAGAGAGAGCACGAGAAGGAAGTTCTGAAGAAAGCCATGGAAGAGAACAACAACTTCAGCAAGACGGCAGAGGAGAAGCTCAATCAGAAAATGGAAGCCAACAAAGAGAATCGCACGGCACGAATGGCAGCACTCAATGAGAAATTCAAGGAGAAGGATAAGAAGCTTGAGGAGGTACGAAAGGCAAAGGAAACAAAACCAGAGGGGGAGAACTGATTTTATTttgtaataatttaaaaaaaacttgtgcAAAGATATCTTTTTGTTCTGTTCAATGACAGTATTATATTTGTCATTGTTATAGTTTTATTCACCTTGTTTGGATTAGTTAGGCTGTCCATTGTTGCTTTTGTTGTGGATGTGTAAGTATTTCTTCCCACACCTCCGGTAGATTTGTGTATTGCAGTTTATGACCTTTGAAATAAGCAGCGTTTTTACCTATAAGGAAGCATGCCACTGTTACGCATAGGTCCTTATCATTGTGAATTGCATAATATAAGTAAATCCTTGTACCTTGTAAAACTGTGTTTATCTGATCTTAATAAAGTTGCAATTGTTCTTTAAAA
>XM_021563644.2
AAGAGGTGCTTCATTCCGCCAACTgttaagatagctagctacagtagctagctaatttaTTCAGGTTGTTAGCCAGTGTCTGTGCCCCTGCTGAGCTGACAGTGCAGCCGAGTCCATTGTCTCCTCAGCACCAGTTTGCTATTCGTGCATTTGAAGGCATAGCAACCCTCAGTACTCTGCTGAAATGGCATCCTCTGGAGAGATCCTGGTCAAGGAGTTGGACAAGCGTGCTTCAGGTCAAGCATTTGAGGTAATCTTGGCCCCCGATGCCAAGGGTGAAATCCCCCTACCTCCCccgaaggagaagaaggagatgTCCCTGGAGGAGATTCAGAAGAAACTGGAGGCTGCAGAGGAGAGACGCAAGAGTCATGAGGCAGAGGTGCTGAAGCACTTAGCTGAGAAGAGAGAGCACGAGAAGGAAGTTCTGAAGAAAGCCATGGAAGAGAACAACAACTTCAGCAAGACGGCAGAGGAGAAGCTCAATCAGAAAATGGAAGCCAACAAAGAGAATCGCACGGCACGAATGGCAGCACTCAATGAGAAATTCAAGGAGAAGGATAAGAAGCTTGAGGAGGTACGAAAGGCAAAGGAAACAAAACCAGAGGGGGAGAACTGATTTTATTttgtaataatttaaaaaaaacttgtgcAAAGATATCTTTTTGTTCTGTTCAATGACAGTATTATATTTGTCATTGTTATAGTTTTATTCACCTTGTTTGGATTAGTTAGGCTGTCCATTGTTGCTTTTGTTGTGGATGTGTAAGTATTTCTTCCCACACCTCCGGTAGATTTGTGTATTGCAGTTTATGACCTTTGAAATAAGCAGCGTTTTTACCTATAAGGAAGCATGCCACTGTTACGCATAGGTCCTTATCATTGTGAATTGCATAATATAAGTAAATCCTTGTACCTTGTAAAACTGTGTTTATCTGATCTTAATAAAGTTGCAATTGTTCTTTAAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process

KEGG:

id description
K04381 STMN1; stathmin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563634.2 False 1178 mRNA 0.42 5 43947088 43950347
XM_021563644.2 True 969 mRNA 0.43 5 43947934 43950347

Neighbor

gene id symbol gene type direction distance location
LOC110490231 LOC106605011 coding upstream 295336 43630465 ~ 43651752 (+)
LOC110501593 pigv coding upstream 347661 43597314 ~ 43599427 (+)
LOC110490199 NA coding upstream 350729 43570290 ~ 43596359 (+)
LOC110501584 NA coding upstream 388151 43551582 ~ 43558937 (+)
LOC110490176 NA coding upstream 593427 43351127 ~ 43353661 (+)
LOC110490326 LOC106605007 coding downstream 4702 43955049 ~ 43960992 (+)
LOC110490388 LOC106604983 coding downstream 514627 44464974 ~ 44472924 (+)
LOC110490437 LOC106584212 coding downstream 600816 44551163 ~ 44553979 (+)
LOC110490546 LOC106560730 coding downstream 1252962 45203309 ~ 45255843 (+)
tsg101a tsg101 coding downstream 1493726 45444073 ~ 45468845 (+)
G146171 NA non-coding upstream 29310 43896918 ~ 43917778 (+)
G146168 NA non-coding upstream 49848 43893336 ~ 43897240 (+)
G146165 NA non-coding upstream 58308 43886596 ~ 43889609 (+)
G146130 NA non-coding upstream 113350 43833516 ~ 43833738 (+)
G146113 NA non-coding upstream 148270 43798567 ~ 43798818 (+)
G146201 NA non-coding downstream 14222 43964569 ~ 43965697 (+)
G146221 NA non-coding downstream 38805 43989152 ~ 43989351 (+)
G146238 NA non-coding downstream 63685 44014032 ~ 44014243 (+)
G146245 NA non-coding downstream 70644 44020991 ~ 44021229 (+)
G146645 NA non-coding downstream 248310 44198657 ~ 44203445 (+)
G146114 NA other upstream 147235 43799404 ~ 43799853 (+)
G146091 NA other upstream 177926 43768707 ~ 43769162 (+)
G146054 LOC100136012 other upstream 215870 43730872 ~ 43731218 (+)
G144661 NA other upstream 1381058 42510330 ~ 42566030 (+)
G146226 NA other downstream 46433 43996780 ~ 43997065 (+)
G146841 NA other downstream 478806 44429153 ~ 44429393 (+)
G147510 NA other downstream 920453 44870800 ~ 44871500 (+)
G148191 NA other downstream 1521735 45472082 ~ 45492379 (+)
uevld uevld other downstream 3031372 46981686 ~ 47007672 (+)

Expression


Co-expression Network