LOC110490326 (LOC106605007)


Basic Information

Item Value
gene id LOC110490326
gene name LOC106605007
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43955049 ~ 43960992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563656.2
ATAAAAATCCGACGGGCGCTCTACCCGCACAAGAATAATCATACTTTAGAAATGTTATTGTTCAAACAATGTTATTTAAATTTGATGTATTAATGAATAATCCAAATGATTCACTATTCAAGGTTTTGCACTGATACTGCGTTTGCCTTCTTCAGTTTGCCATGGCGACCGTGGTGATGGAGCAGATTGGTCGCCTGTTCATCAATGCTCAACAGTTGCGTCAGATTCCTCAGCTGCTCGAGTCGGCCTTCCCTACTCTGCCCTGCACCGTGAAGGCCCATGATGTGCCCTGGGTGTTCCGTGAGCCTCACATCCTTGGAGGCTACAGGCAGCCGGAACACAGCTGGCGCTACTACTTCCTCACCCTCTTCCAGAGGCACAACGAGGCACTCAACGTTTGGACCCACCTGCTCGCCGCCTTTATCATCCTGGTCAAGTGCCAGGAGCTGTCTGAGACAGTGGATTTTCTCCGTGACCCCCACGCCCAGCCCCTGTTTATTGTCCTCCTCTCAGCCTTCACCTACCTGTCGTGCAGTGCCCTGGCCCACCTGCTCAACGCCAAGTCCGAGCTCTCCCACTACACCTTCTACTTCCTGGACTATGTGGGCGTGGCCATCTACCAGTATGGCAGCGCCCTGGCCCACTTTTACTATGCCATCGAGGAGGGCTGGCACACCCGGGTGCGAGGGATCTTCCTGCCCACCGCAGCGTTCCTAGCCTGGTTCTCGTGCTTCGGCTGCTGCTACGGCAAGTATGCCAGCCCGAGGCTGCCCAAATTTGCCCACAAGCTGTTCCAGGTGGTGCCCTCGGGCCTGGCCTACTGCCTGGACATTAGTCCCGTGCTGCACCGCATCTACAGCTGCCACCAGCAGGAGGGGGGCTGCTCCAACCAGGCTGTGGCTTACCACCGCTACCAGGTACTCTTTTTCCTGGTGAGCGCCTACTTCTTTGCCTGCCCCCACCCAGAGCGCTGGCTGCCCGGGCGATGTGACTTCATTGGCCAGGGCCACCAGATCTTCCACGTGTTCCTGGTGCTGTGCACCCTGGTGCAGATCGAGGCGACACGCATAGACTACATTGAGCGGAGGCCTCTCTACGAGCGTCTCCACGGCAACCTGGCCCATGATGCAGTGGCACTCTTCATCTTCACGGCATGCTGCAGCGCGCTCACTGCCTTCTACGTGCGGAAACGTGTGCAGGCGCAACTGTGCGAAAAAGAGAAGTAGGAGCTGtcaggacagagggagaaaggaggataaGGGAGAAAGACTAATCTGATTTACACTggaaagctaaaaaaaaaagacaagagATTAAAGCAATTAGACTGTTCATTTTGTAAAAACAATGacctgctgtttttttttttttttttttttttttttgtggcctGCCAAATGACATTTTAAACTGGCAACATTGACTGTCTTGTGATGTTGACCTTCCAGGAAGACAGAAAAATCCTGGTAGTTTCTGTCTGTCACATCACAAGCAGTCCCTGTAACACTCCAAATAAAATCTTTGCACTTCACAAAGAGGGTAAGATGAAGGTCGGAATTGAGACTTTTTTTATTGTGTTGATTTTCCTATTCATTTTCCACTCTCTACTGTGAGATCACATGTCATGGCCTGGCTAGCTACTGAATAGTCTGAATGACTGTTtgactacatactgtactgtacagactgACCAACACCAGGCATGACACAGACCATCTCCATAGAGGTATGCAGGAAAGAATGGAAAGAATACCCACGTTGCCCTTAAGTGGATCatcaaataaataattacaatAGTTTAATAATTTCTCACCAGCTTTTATTTCTTAAAAGTACAATGTGAGTTTCTAGCTATTTGACTCCCAAGTCAAATGTTAATGCTTAATGAAGACCAGTATTCTTTTTTGTGTTCCTTGTATATCTCATGATATTCCAGTGAGCTGCAGTCGACACCTCCAAATGCTGTCTCCCCTACTCATTCTCTCTGTTTTATCTACCATTTTCTCTGCCCATTTTCTCCAAAGCTGGGTTTGCTAACTGATTGAGATGCCTATACGCGCTGTCAGATATAATAGACTGGCAGTTAGACTTGGCTAGAGGCATACCGCGCACAATTTGCAAACCAAACAGAACATTTCTCCTCTAAGATACATACATTGGCCATTTTACTAACATGTGGATTGATCATGTCAAAGAACAAAGCTGGCACTCTTAGGAGAGTTGGCGTAAGAAATGGATGGAACTATGTGCCCAAGATGACTATGATGTCTCTTTGTCGTTGTGATAATATTCCTTTGTATTCAAAGGGCGGGAACTTCAGTTTttgccttttttttgcctttgtgTGTATTGTTCAGTCTTTTCATGTACTTGACTTTACTCACAAAAGGGCTGTCTTAGTACTTAGTATGGTGACTTACTGCTTGTACATTTGTATATGTATGGTtgggtatgtacagttgaagtcggaagtttacatactcttaggttgcagtcattaaaactaattttaaacgactccacaaatttcttgttaacaaactatagttttggc

Function

NR:

description
membrane progestin receptor alpha-like

GO: NA

KEGG:

id description
K25040 PAQR8, MPRB; membrane progestin receptor beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563656.2 True 2554 mRNA 0.47 2 43955049 43960992

Neighbor

gene id symbol gene type direction distance location
LOC110490316 LOC106584327 coding upstream 4702 43947088 ~ 43950347 (+)
LOC110490231 LOC106605011 coding upstream 303297 43630465 ~ 43651752 (+)
LOC110501593 pigv coding upstream 355622 43597314 ~ 43599427 (+)
LOC110490199 NA coding upstream 358690 43570290 ~ 43596359 (+)
LOC110501584 NA coding upstream 396112 43551582 ~ 43558937 (+)
LOC110490388 LOC106604983 coding downstream 503982 44464974 ~ 44472924 (+)
LOC110490437 LOC106584212 coding downstream 590171 44551163 ~ 44553979 (+)
LOC110490546 LOC106560730 coding downstream 1242317 45203309 ~ 45255843 (+)
tsg101a tsg101 coding downstream 1483081 45444073 ~ 45468845 (+)
brsk2a LOC106560719 coding downstream 1635011 45596003 ~ 46132114 (+)
G146171 NA non-coding upstream 37271 43896918 ~ 43917778 (+)
G146168 NA non-coding upstream 57809 43893336 ~ 43897240 (+)
G146165 NA non-coding upstream 66269 43886596 ~ 43889609 (+)
G146130 NA non-coding upstream 121311 43833516 ~ 43833738 (+)
G146113 NA non-coding upstream 156231 43798567 ~ 43798818 (+)
G146201 NA non-coding downstream 3577 43964569 ~ 43965697 (+)
G146221 NA non-coding downstream 28160 43989152 ~ 43989351 (+)
G146238 NA non-coding downstream 53040 44014032 ~ 44014243 (+)
G146245 NA non-coding downstream 59999 44020991 ~ 44021229 (+)
G146645 NA non-coding downstream 237665 44198657 ~ 44203445 (+)
G146114 NA other upstream 155196 43799404 ~ 43799853 (+)
G146091 NA other upstream 185887 43768707 ~ 43769162 (+)
G146054 LOC100136012 other upstream 223831 43730872 ~ 43731218 (+)
G144661 NA other upstream 1389019 42510330 ~ 42566030 (+)
G146226 NA other downstream 35788 43996780 ~ 43997065 (+)
G146841 NA other downstream 468161 44429153 ~ 44429393 (+)
G147510 NA other downstream 909808 44870800 ~ 44871500 (+)
G148191 NA other downstream 1511090 45472082 ~ 45492379 (+)
uevld uevld other downstream 3020727 46981686 ~ 47007672 (+)

Expression


Co-expression Network