LOC110490437 (LOC106584212)


Basic Information

Item Value
gene id LOC110490437
gene name LOC106584212
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44551163 ~ 44553979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563838.2
GCTCCACCTCCCCTTGAGTTAAAAAAAATTGTATGTATAATCCCTGAGTTGACCCAGAAAATAAGCAGTATGTGCATCGGCCCTGCTTGAGCATGAAGCGTAACCCTGTGGAATACATACTGTAATCTGAAGACACCTCGCTTTGCAAAACTAAAATAAAAACGTAGCAGTAGCAAAATCGCTGAACTTTAATCCGAGTAGATACGGGAGCCATGGCAGATCATCTAATAATGCCCATGAACCACAGCTCTGCAGGCGGGGGCCTCCACAGCTACAGACTAGGCATGAACGGAGGCCTGCAGGCAGGCCACCAGCAGCACGTAGTGCCTCAGCCCGGCCTCCGAGCCCTGCCCAATGGCCAGATGATGCACTACGGTGGGGGACCTCAGCAGCAGGCCACCATGGAGGTGGCCATGAGGCAGCGGCAAGGCATGGTGGGGCCCGTGAACAGACAGCCCAACGGGGCTCAGATGGGCCACCACCAGATAACGTCTGGTAACACGATGTACAACAAAGGGCAGGCCCAGCAGCAACAccacacccagcaccaacacatgaGCCTCCAGCAGCACCCGCAGCAACAACAGCAGTATATGAATGGTGGTCTCACGTCCCAGCAGCTCATGGCCAGCATGCATCTGCAAAAACTCAACACCCAGTATCACGGACATCCACTGGGGCCCATGAACAGCAACCACATGGGCAACGGGGCAGCCCAGTACCGCATTTGCCCGGCCCAGCTGGCTAACATGCAGCAGATGGCCGGGCCGGCTCTGGCCTTGAATGGCATGGATGCGGACATGATTGACGAGGAGGTTTTGACATCCCTGGTTGTGGAGCTGGGCCTGGACCGCATTCAGGAGCTGCCCGAACTCTTCCTGGGCCAGAACGAATTTGACTTCATCTCAGACTTTGTGAGCAAACAGCTGCCCAGCACCATCAGCTGCTGAGTGAGAGAGGACCTGAGTCAACGATGCTGTGAAGGGGCCTGGAAGGGTGGAGAGTTTGGAAAGACTTGAGTAGAGTGTTGCCCACTGGAAACAACTACTGCTCCGCTTTTCGTTTTTGTGTTGTTCCTTTCACTCTAACAGTGCTAGGTCGCAGAGAAGAGTGAGCGAGAGACACTGGTCTGGATAGCCACAGTGCTATGGTGTCATTTGTGAAGTGACCAGAGGTATGGTTCTGTGTTGGGTCGCAGCTCGCCTGTAATGGGACATCGTCCTCCAGCATCTCTTCTCTCCAGAGATGAATGTAAACAAAACTGCAGAATTTGTTCAGAGTGGCTTCTCAATGTTACGACACTGTTGCCTCCTACATTGGACTCAATGGCAGTTTAGtagtaaaatgtatttatttattactcTCAGAGAAATTAAAATAGAACAAACCAGAGACCGACAGAATCAAGTTATTTTGGTGTTTTGGATAAGGTCAGGGGAAGCTCGtagtttgtattttttaaatattgtttttatttttagttAATTGGTCTGGGCCTTCTGTTTTGAAAATAAGCCCCTCAGattaattttttattttccaAGAGCTTGGATTTCTCTCCAAGAATGGAGATGGCAGTACAAGTAGAATGCCATTTCATGGATTTGAATGGAAGTCTATCATCATTGAATAACTCACTTTTGGCAAGGATTGCTTTTAGCTGTGATGTTCTCAAACCTACTCCTTGTACTGTATAAAGCTGTGTTAATACAGGAAAGTCTATGTAAGATATAGAACTACATTAATTATGCGAATTTATTATTTTCTTTACTGGTGGTTTTTATCTTCCCTTTGCGGTCAAGACGGGGTTTTGAGGATCAATAAAGATGGCCCGGATATAAGTGTGGCCTGCTTTTACATTCATTGCAGA
>XM_021563829.2
CTCCACCTCCCCTTGAGTTAAAAAAAATTGTATGTATAATCCCTGAGTTGACCCAGAAAATAAGCAGTATGTGCATCGGCCCTGCTTGAGCATGAAGCGTAACCCTGTGGAATACATACTGTAATCTGAAGACACCTCGCTTTGCAAAACTAAAATAAAAACGTAGCAGTAGCAAAATCGCTGAACTTTAATCCGAGTAGATACGGACAGGAGCCATGGCAGATCATCTAATAATGCCCATGAACCACAGCTCTGCAGGCGGGGGCCTCCACAGCTACAGACTAGGCATGAACGGAGGCCTGCAGGCAGGCCACCAGCAGCACGTAGTGCCTCAGCCCGGCCTCCGAGCCCTGCCCAATGGCCAGATGATGCACTACGGTGGGGGACCTCAGCAGCAGGCCACCATGGAGGTGGCCATGAGGCAGCGGCAAGGCATGGTGGGGCCCGTGAACAGACAGCCCAACGGGGCTCAGATGGGCCACCACCAGATAACGTCTGGTAACACGATGTACAACAAAGGGCAGGCCCAGCAGCAACAccacacccagcaccaacacatgaGCCTCCAGCAGCACCCGCAGCAACAACAGCAGTATATGAATGGTGGTCTCACGTCCCAGCAGCTCATGGCCAGCATGCATCTGCAAAAACTCAACACCCAGTATCACGGACATCCACTGGGGCCCATGAACAGCAACCACATGGGCAACGGGGCAGCCCAGTACCGCATTTGCCCGGCCCAGCTGGCTAACATGCAGCAGATGGCCGGGCCGGCTCTGGCCTTGAATGGCATGGATGCGGACATGATTGACGAGGAGGTTTTGACATCCCTGGTTGTGGAGCTGGGCCTGGACCGCATTCAGGAGCTGCCCGAACTCTTCCTGGGCCAGAACGAATTTGACTTCATCTCAGACTTTGTGAGCAAACAGCTGCCCAGCACCATCAGCTGCTGAGTGAGAGAGGACCTGAGTCAACGATGCTGTGAAGGGGCCTGGAAGGGTGGAGAGTTTGGAAAGACTTGAGTAGAGTGTTGCCCACTGGAAACAACTACTGCTCCGCTTTTCGTTTTTGTGTTGTTCCTTTCACTCTAACAGTGCTAGGTCGCAGAGAAGAGTGAGCGAGAGACACTGGTCTGGATAGCCACAGTGCTATGGTGTCATTTGTGAAGTGACCAGAGGTATGGTTCTGTGTTGGGTCGCAGCTCGCCTGTAATGGGACATCGTCCTCCAGCATCTCTTCTCTCCAGAGATGAATGTAAACAAAACTGCAGAATTTGTTCAGAGTGGCTTCTCAATGTTACGACACTGTTGCCTCCTACATTGGACTCAATGGCAGTTTAGtagtaaaatgtatttatttattactcTCAGAGAAATTAAAATAGAACAAACCAGAGACCGACAGAATCAAGTTATTTTGGTGTTTTGGATAAGGTCAGGGGAAGCTCGtagtttgtattttttaaatattgtttttatttttagttAATTGGTCTGGGCCTTCTGTTTTGAAAATAAGCCCCTCAGattaattttttattttccaAGAGCTTGGATTTCTCTCCAAGAATGGAGATGGCAGTACAAGTAGAATGCCATTTCATGGATTTGAATGGAAGTCTATCATCATTGAATAACTCACTTTTGGCAAGGATTGCTTTTAGCTGTGATGTTCTCAAACCTACTCCTTGTACTGTATAAAGCTGTGTTAATACAGGAAAGTCTATGTAAGATATAGAACTACATTAATTATGCGAATTTATTATTTTCTTTACTGGTGGTTTTTATCTTCCCTTTGCGGTCAAGACGGGGTTTTGAGGATCAATAAAGATGGCCCGGATATAAGTGTGGCCTGCTTTTACATTCATTGCAGA

Function

NR:

description
cbp/p300-interacting transactivator 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563838.2 False 1870 mRNA 0.48 2 44551163 44553979
XM_021563829.2 True 1873 mRNA 0.48 2 44551164 44553979

Neighbor

gene id symbol gene type direction distance location
LOC110490388 LOC106604983 coding upstream 78239 44464974 ~ 44472924 (+)
LOC110490326 LOC106605007 coding upstream 590171 43955049 ~ 43960992 (+)
LOC110490316 LOC106584327 coding upstream 600816 43947088 ~ 43950347 (+)
LOC110490231 LOC106605011 coding upstream 899411 43630465 ~ 43651752 (+)
LOC110501593 pigv coding upstream 951736 43597314 ~ 43599427 (+)
LOC110490546 LOC106560730 coding downstream 649330 45203309 ~ 45255843 (+)
tsg101a tsg101 coding downstream 890094 45444073 ~ 45468845 (+)
brsk2a LOC106560719 coding downstream 1042024 45596003 ~ 46132114 (+)
LOC118940395 NA coding downstream 1145218 45699197 ~ 45755983 (+)
spty2d1 spty2d1 coding downstream 2412157 46966136 ~ 46980755 (+)
G146850 NA non-coding upstream 108976 44441870 ~ 44442187 (+)
G146848 NA non-coding upstream 115437 44435086 ~ 44435726 (+)
G146845 NA non-coding upstream 118262 44432693 ~ 44432901 (+)
G146843 NA non-coding upstream 120018 44430885 ~ 44431145 (+)
G146676 NA non-coding upstream 333097 44217617 ~ 44218066 (+)
G147346 NA non-coding downstream 53694 44607673 ~ 44608027 (+)
G147347 NA non-coding downstream 55729 44609708 ~ 44612919 (+)
G147348 NA non-coding downstream 57243 44611222 ~ 44611884 (+)
G147349 NA non-coding downstream 61083 44615062 ~ 44617145 (+)
G147353 NA non-coding downstream 74140 44628119 ~ 44628374 (+)
G146841 NA other upstream 121770 44429153 ~ 44429393 (+)
G146226 NA other upstream 554098 43996780 ~ 43997065 (+)
G146165 NA other upstream 661554 43886596 ~ 43889609 (+)
G146114 NA other upstream 751310 43799404 ~ 43799853 (+)
G146091 NA other upstream 782001 43768707 ~ 43769162 (+)
G147510 NA other downstream 316821 44870800 ~ 44871500 (+)
G148191 NA other downstream 918103 45472082 ~ 45492379 (+)
uevld uevld other downstream 2427740 46981686 ~ 47007672 (+)
G150997 NA other downstream 2943969 47497948 ~ 47547579 (+)
G152167 NA other downstream 4002803 48556782 ~ 48557686 (+)

Expression


Co-expression Network