LOC110501628 (LOC106588271)


Basic Information

Item Value
gene id LOC110501628
gene name LOC106588271
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 45123713 ~ 45124844 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110501628
TGACATGGCAAAGCAGCGGGCTCTAAATATTATCAGGAAGTTCAAGAAGGACAAAGGTTACGCTGCAGAGTACAAAGGCTTCATGGAAGAGATGATAACAAAAGGTTACGCCGAGAAGGTACCACAAGAACAGCTCCTCAGAGAGAAAGGCAAGGTATGGTACATACCACACCATGGCGTTCACCATAAGCGCAACGGAACGATACGAGTGGTGTTTGACTGTTCATCATCCTATAAAGGTACATCTCTTAACAGTGAACTCCTTCAAGGCCCTGACCTGGCAAACACGCTTATAGGAGTCTTGCTAAGATTTCGGCAAGAGCACATTGCCATGATGGCGGACATCGAATGAATGTTCCATCAAGTACGTGTCCATGAAGATTACTTAGACTTCCTGCGATTCCTATGGTGGCCGGACGGTGATACTAACAAAAGATTGGAGGAGTACAGAATGACGGTTCATCTTTTCGATGCTATATCCTCTCCAAGTTGTGCAAACTTTGCACTGTGAAAGACTGCAGAAGACAACTGTGAGAGGTATGATAAAGAGGTGATTCAAACAGTCAAGTCCAACTTCTATGTTGATGACTGCCTCAAGTCAGTGGCCACAGAAGAACAAGCCATAGCTCTCACAAAAAACCTCAGGGATGTGTGCTCTCAGGGTGGGTTCAAATTGACCAAGTGGATCAGCAACAACCGCACTGTGCTGGTTTCTATCCCTGATGAACACAAAGCCAAGCAGATAAAAGAACTGGACCTGGACAGAGAGAAGCTGCCTGTTGAAAGAGCACTTGGAATCCAATGGAACATTGAAAGTGATGCGTTTACCTTCCGAGTCACTGTCAAGAACAGACCCCTTACAAGAAGAGGTATTCTCTCAACTGTGAGCTCTATTAATGATCCATTAGGTTTCCTCGCCCCATTTGTATTAAAGGCAATGCAAATTCTTCAAATGCTCTGCAAGCTAAAGTGTGGATGGGACGAAAAGGAAGAACACTCCATTTCATGGAAGAGATGGCTCTCAGAGCTGGACCAGCTCTCCAGATTCCAGATAGACAGGTGCATGATGCCTGAGAACTTTGGTCAAGTCAAGACCGCACAGCTGCATCACTTCGGTGATGCAAGTGAATAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106588271

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110501628 True 1132 mRNA 0.45 1 45123713 45124844

Neighbor

gene id symbol gene type direction distance location
LOC110501618 LOC106573044 coding downstream 50573 44757398 ~ 45073140 (-)
LOC118940389 NA coding downstream 385735 44730092 ~ 44737978 (-)
LOC110490449 scmh1 coding downstream 516848 44571948 ~ 44606865 (-)
LOC110490352 NA coding downstream 659264 44434790 ~ 44464449 (-)
LOC110490335 ptpru coding downstream 700828 44084560 ~ 44422885 (-)
LOC110490531 LOC106560723 coding upstream 9632 45134476 ~ 45168260 (-)
LOC118936755 LOC106560723 coding upstream 46354 45171198 ~ 45171856 (-)
si:ch211-272n13.3 LOC106560721 coding upstream 153550 45278394 ~ 45394968 (-)
ldha ldha coding upstream 344398 45469242 ~ 45491918 (-)
abtb2b abtb2 coding upstream 1014412 46139256 ~ 46289343 (-)
G147812 NA non-coding downstream 246917 44876470 ~ 44876796 (-)
G147808 NA non-coding downstream 249466 44874031 ~ 44874247 (-)
G147804 NA non-coding downstream 252311 44870880 ~ 44871402 (-)
G147803 NA non-coding downstream 253039 44870148 ~ 44870674 (-)
G147802 NA non-coding downstream 255000 44868473 ~ 44868713 (-)
G148011 NA non-coding upstream 42402 45167246 ~ 45171077 (-)
G148014 NA non-coding upstream 48846 45173690 ~ 45173929 (-)
G148015 NA non-coding upstream 49672 45174516 ~ 45174727 (-)
G148104 NA non-coding upstream 132285 45257129 ~ 45257400 (-)
G148282 NA non-coding upstream 148592 45273436 ~ 45273702 (-)
G147800 NA other downstream 260154 44863085 ~ 44863559 (-)
LOC110490298 LOC106605170 other downstream 1339994 43776063 ~ 43783884 (-)
LOC110490183 LOC106605015 other downstream 1731584 43372725 ~ 43392160 (-)
tmem86a tmem86a other upstream 1719336 46844180 ~ 46921608 (-)
G150290 NA other upstream 1721308 46846152 ~ 46849616 (-)
G150618 NA other upstream 1839890 46964734 ~ 46993665 (-)
G150675 LOC100653436 other upstream 2070049 47194893 ~ 47205433 (-)

Expression


Co-expression Network