LOC110490546 (LOC106560730)


Basic Information

Item Value
gene id LOC110490546
gene name LOC106560730
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 45203309 ~ 45255843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563975.2
tgattgtctatgttagttgcttgtggtCTCTCAGTGTAATTGTCTGgGGGCCATGGAACGCATGGCGCAAATTAGTCTGAGTCATCGAGGAACATGTATTGGTTGACGGGATTAGCCAAAGGGATTAATTATCCTGAGGTCTCAATGACTATGATGAGTCCTCAGCAGATGCAGCAGCTTCTGTCCCCGGGTCAGCTCCAGGCTCTGCTCCAGCAACAGCAGCACGCTATcctgctccagcagctCTCTAGGCAGCAGCTAGTGTTCCAGCAGATCCTCCAGCAGGAGCTGTTCAAAGTGCAAAGACCAGGCCTGGCCTCCCACACCTTGTTTCCAGCTGGCTTGAATACTATTGAGCTCCAGCAGATATGGAAGGAGCTAACCAACAGCACAATGGAAGATGAAAGCACAAAGGATAGCTGTCCAGACCGTATCATCACTCTGTCCCCTACTGAACCCGTAACCACAGCCAAAGCATCAATGTCAAACACCCACAACTTCCCTACCAACGGCCAATCTCTTAGTTCCAGCCCAAGAGAAGGCTTGCTGGATGTGGATCAAACACACTCACTCTATGGATATGGTGTGTGTATTTGGCCGGGCTGTGAGACTGTTTGTGAAAACGTCAGCCAGTTTATCAAGCACCTAAGTATTGAGCACATGCTGGATGAAAGGAGCACAGCCCAGTGCAGAGTCCAGATGCAGGTGGTGCAGCAGTTAGACCtccagCTCTCTAAAGAACGGGAGCGTCTCCAAGCTATGATGGCCCACTTACAACTGCCAACTTTGCAACCACAGTCCCCTTCCAAACCTCTGAGTTCTGGGTCCGGTGTCACCATGTCCAAGAGCCTTCCACCACTGTCCCCTCAGATGCCCCCAACGGCCCCTGTCACCTCCCCATCCTCACCCCGGGGGCCTGTAGGACTCTGCCCCACAAGTGTGGGGGCAATGCAAAGACACCACTCAGACAAGCACCCCTCTCTATGCTCTCTGTCTTCAGAATTGAACCCAAATCATGAGATGTACAGAAATGCAGATATCAGGCCACCTTTTACCTATGCTACTCTGATAAGACAGGCTATAATGGATGCATCAGACATGCAGTTAACACTTAATGAGATATACAGCTGGTTTACACAGACCTTTGCCTACTTCAGACGCAATGCTGCAACGTGGAAGaatgcAGTCCGCCACAACCTGAGCCTGCACAAGTGTTTTGTGCGTGTGGAGAACGTGAAGGGGGCCGTGTGGACAGTGGACGAGATGGAGTACCAGAGAAGGTCTCAGAAGATCACAAGAAGCCCAACGCTAGGGAAGAACCTTCTCTCCAGCCTTGCTTATTGGACTGCTCTTAATACCAGTTTACAAGCTCCACTGACTGAGAATGCTCTGGCTGTATTAAAGAACAGGAGCCCTGCAGGCCTGATAGGCAGCAGTTATTTGGGTCTGGTACACCGGACCAAGTCACTAAAACATCTGGACCTCCAAGACACCAATGGACAACGCAGCACACACTCCACTTCACTGGCCCAGCTGCCCCTCGTTGTCAAGGAAGAGGAGACACCACCAGTGATTAAGAATTTGGAGGATAAAGAATGTCTGATGTAATTGCTGACAACAGCAAATCCCAGTCCAGAGATGCAGCAGGACATGGAGCAAAAGAAGGGA
>XM_036949670.1
gttagttgcttgtggtCTCTCAGTGTAATTGTCTGgGTCTCAATGACTATGATGAGTCCTCAGCAGATGCAGCAGCTTCTGTCCCCGGGTCAGCTCCAGGCTCTGCTCCAGCAACAGCAGCACGCTATcctgctccagcagctCTCTAGGCAGCAGCTAGTGTTCCAGCAGATCCTCCAGCAGGAGCTGTTCAAAGTGCAAAGACCAGGCCTGGCCTCCCACACCTTGTTTCCAGCTGGCTTGAATACTATTGAGCTCCAGCAGATATGGAAGGAGCTAACCAACAGCACAATGGAAGATGAAAGCACAAAGGATAGCTGTCCAGACCGTATCATCACTCTGTCCCCTACTGAACCCGTAACCACAGCCAAAGCATCAATGTCAAACACCCACAACTTCCCTACCAACGGCCAATCTCTTAGTTCCAGCCCAAGAGAAGGCTTGCTGGATGTGGATCAAACACACTCACTCTATGGATATGGTGTGTGTATTTGGCCGGGCTGTGAGACTGTTTGTGAAAACGTCAGCCAGTTTATCAAGCACCTAAGTATTGAGCACATGCTGGATGAAAGGAGCACAGCCCAGTGCAGAGTCCAGATGCAGGTGGTGCAGCAGTTAGACCtccagCTCTCTAAAGAACGGGAGCGTCTCCAAGCTATGATGGCCCACTTACAACTGCCAACTTTGCAACCACAGTCCCCTTCCAAACCTCTGAGTTCTGGGTCCGGTGTCACCATGTCCAAGAGCCTTCCACCACTGTCCCCTCAGATGCCCCCAACGGCCCCTGTCACCTCCCCATCCTCACCCCGGGGGCCTGTAGGACTCTGCCCCACAAGTGTGGGGGCAATGCAAAGACACCACTCAGACAAGCACCCCTCTCTATGCTCTCTGTCTTCAGAATTGAACCCAAATCATGAGATGTACAGAAATGCAGATATCAGGCCACCTTTTACCTATGCTACTCTGATAAGACAGGCTATAATGGATGCATCAGACATGCAGTTAACACTTAATGAGATATACAGCTGGTTTACACAGACCTTTGCCTACTTCAGACGCAATGCTGCAACGTGGAAGaatgcAGTCCGCCACAACCTGAGCCTGCACAAGTGTTTTGTGCGTGTGGAGAACGTGAAGGGGGCCGTGTGGACAGTGGACGAGATGGAGTACCAGAGAAGGTCTCAGAAGATCACAAGAAGCCCAACGCTAGGGAAGAACCTTCTCTCCAGCCTTGCTTATTGGACTGCTCTTAATACCAGTTTACAAGCTCCACTGACTGAGAATGCTCTGGCTGTATTAAAGAACAGGAGCCCTGCAGGCCTGATAGGCAGCAGTTATTTGGGTCTGGTACACCGGACCAAGTCACTAAAACATCTGGACCTCCAAGACACCAATGGACAACGCAGCACACACTCCACTTCACTGGCCCAGCTGCCCCTCGTTGTCAAGGAAGAGGAGACACCACCAGTGATTAAGAATTTGGAGGATAAAGAATGTCTGATGTAATTGCTGACAACAGCAAATCCCAGTCCAGAGATGCAGCAGGACATGGAGCAAAAGAAGGGA

Function

NR:

description
forkhead box protein P2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563975.2 False 1668 mRNA 0.51 15 45203309 45255843
XM_036949670.1 True 1566 mRNA 0.51 14 45203320 45255843

Neighbor

gene id symbol gene type direction distance location
LOC110490437 LOC106584212 coding upstream 649330 44551163 ~ 44553979 (+)
LOC110490388 LOC106604983 coding upstream 730385 44464974 ~ 44472924 (+)
LOC110490326 LOC106605007 coding upstream 1242317 43955049 ~ 43960992 (+)
LOC110490316 LOC106584327 coding upstream 1252962 43947088 ~ 43950347 (+)
LOC110490231 LOC106605011 coding upstream 1551557 43630465 ~ 43651752 (+)
tsg101a tsg101 coding downstream 188230 45444073 ~ 45468845 (+)
brsk2a LOC106560719 coding downstream 340160 45596003 ~ 46132114 (+)
LOC118940395 NA coding downstream 443354 45699197 ~ 45755983 (+)
spty2d1 spty2d1 coding downstream 1710293 46966136 ~ 46980755 (+)
uevld uevld coding downstream 1725843 46981686 ~ 47007672 (+)
G148030 NA non-coding upstream 13219 45189773 ~ 45190090 (+)
G148029 NA non-coding upstream 13946 45189157 ~ 45189363 (+)
G148018 NA non-coding upstream 25812 45177199 ~ 45177497 (+)
G148016 NA non-coding upstream 28242 45174846 ~ 45175067 (+)
G147654 NA non-coding upstream 60141 45072846 ~ 45143168 (+)
G148127 NA non-coding downstream 22809 45278652 ~ 45279223 (+)
G148129 NA non-coding downstream 26559 45282402 ~ 45282662 (+)
G148134 NA non-coding downstream 34070 45289913 ~ 45290152 (+)
G148252 NA non-coding downstream 255096 45510939 ~ 45512458 (+)
G148254 NA non-coding downstream 258903 45514746 ~ 45519843 (+)
G147510 NA other upstream 331809 44870800 ~ 44871500 (+)
G146841 NA other upstream 773916 44429153 ~ 44429393 (+)
G146226 NA other upstream 1206244 43996780 ~ 43997065 (+)
G146165 NA other upstream 1313700 43886596 ~ 43889609 (+)
G146114 NA other upstream 1403456 43799404 ~ 43799853 (+)
G148191 NA other downstream 216239 45472082 ~ 45492379 (+)
G150997 NA other downstream 2242105 47497948 ~ 47547579 (+)
G152167 NA other downstream 3300939 48556782 ~ 48557686 (+)
LOC110491026 LOC106560691 other downstream 4842573 50098387 ~ 50100624 (+)

Expression


Co-expression Network