tsg101a (tsg101)


Basic Information

Item Value
gene id tsg101a
gene name tsg101
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 45444073 ~ 45468845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564034.2
CGTTTAACCTCATCGAAGAAGAAGACCCGGAAGTACTTTTTTTAATTGTTGCTGACGAGACGCTGTTGCTCATAGCAGTGATCCTTGAATCTCATCGGTATTGCATTACTGCTTACTGATTATTGCATTACCTTTGTGTCttcagaaatatatattttaaacaggtAACGTTTAGCTAAACATAACAATTATACACGCTACTCTTCGTGTCGAAATTAGTATTTTCTTTGACCGGAATCATACGCCGAGGGCCAGCTCACGCTAGCAAGTTGTCGTTTTCAAATAAACAACGTTAACGTTACAGTAGTTAGCTAAACCTAGGTAGTTCATCTGAAGTACATCATATTACACCATCAATCATGGCAGTTGTCAACGAAGGCGCATTGAAGAAAATGCTCAAGCAATACAAATACAGGGACCTGACTGTTCGTGAGATAACCAACGTCATCTCCCAGTACAAGGACCTGAAACCTGTTATGGATTCATATGTTTTCAATGATGGCTCCACTAGAACTCTGGTGAGCTTAACAGGAACAGTGCCAGTCAGCTACAGAGGAAACATATATAACATCCCAGTGTGTCTATGGCTGCTGGACACCTACCCATACAACCctcccatctgttttgtgaagccCACCAGTGCCATGATGATCAAGACTGGCAAACACATTGATGCCAACGGCAAGATCTACCTGCCCTATCTGCACGAGTGGAAACATCCCCAGTCGGACCTGTATGGTCTGATCCAGGTGATGATCGTGGTGTTTGGGGAGGAGCCCCCCGTATTCTCCCGCCCCACCACACAGGCCCCCTACCAGGCCTTCCAGGCTGCAGGACCCCCCAACCCATCCTACATGCCAGGTATGCCAGCGCTCTCCCCGTACGGACCAAACCCCACCCCTGGtGGCTATCCAGGGTACCAGTACCCTAGTGCAAACTCGTATCCTGCCACAGCTggcactacacactacacttcCCAGATTCCTGCCTCCACTGTGGGCCCCAGTAGGGATGGTACCATTGGCGAGGACACCATCCGTGCGTCGCTGATCTCGGCGGTGAGCGACAAGCTTCGTTGGAGGATGAAGGAGGAGATGGACCGGGCGCAAGCCGAGTTGGACGCGCTGAAGAGGACCGAGGAGGACCTGAagaaaggacaccagaaactggAGGAAATGGTCTCACGGCTAGACCAGGAAGTGGCGGAGGTGGACAGGAACATTGACCTACTGAAGCGTAAGGACGAGGAGCTGAGCGAGGCCCTGGAGAAGATGGAGAACCAGTCGGAGAACAACGACATCGATGATGTAATCGTGCCCACGGCGCCACTCTACAAGCAGATCCTCAACCTGTACGCTGAGGAGAATGCCATTGAGGACACCATCTTCTACCTGGGAGAGGCGCTGCGCCGCGGGGTCATAGACCTGGAAGTGTTCCTCAAGCATGTGCGTCTGCTCTCCCGAAAGCAGTTCCAGCTGCGAGCCCTCATGCAGAAAGCCCGCAAGACCGCCGGCCTTAGTGACCTCTACTGACCCCGCGGACACCCATACACACTCCctttctcccagtctctccttctGTACAGGTCCTCCTCTTTATAtctgtctttttgtctctctctctcggtctgtcctcttctctctaaaAGACGTGCCCTAAAATTGTATGAAAAGAGCTAACAAATCTGTTTTGTTTTGAACATCTCCTAAACATGCATCTTTTTGGATAACTAATGTGGAAAATATGCAGTTTGATATGGAGCAAATGTCTGCCAACATTGATTcttgcatttattttttattttttttattaatattGGCAGCCATATGCTTCCATAGTCACAATGTTGGAGTGGTATCAAAGGAGAGGTGTGAGAGTATGTGCTCTGACATTGTGTGACAGTTGCTGGTGTGAGTTTGTGCTACTTGTCTCACTGTAAAGGAAAGCTTACACTCTGATATAAATATACGTCTCAACTAGGGATGTGCATCTCTCCTTTCATGAAAGATTCTAGATACATGGGCACTGATACGCTACAGGAATGATGCCTTTTTGTTTTAAAAGATTCCTTTTGATTAGGTGAGCGAATTAATGTGATTTGGTTAGATACGATATGCTTCAATGCACAAATGTTTTGCATGAACACATTTCATTTTCTATTTTAAAGATATATCTGCTGCTGTTGGGATGACTTCTCTAAGctgagtggctgtgtgtgtgtgttagtcgatgtgtgtgtgtgtgtgtgtgtaggcaccTGAGCTGAGCAATAGGGAAGACTGAGCATCTactaccccactatcagattagggaTGGAAGGCAATTTCTGCTttttgtaccccccccccccccactttatCAGAAATCACCATCACCCACTGATTAACTTGTCATTTTTTAAGAAAATGTTTGAGCTAGTAAGTACTATGTCAATATGTGTCTTTAGAAATGAACATAGCATTTAGCCAATTAAGATAATGCAGTTTTGGATTTTACCCTGTCTAAAAAGCAAATTTATTGGACCATTGATTGCAAAAATGATTGCTGTCCATTATGAAGTTACCTTCTTTGTTTAAAAATGACCAAATACACCGACTGTTGAAAGCAAAATTACCAAAACCTGAACAATTGAAATACAATCTGAATGAAAACCCCAATCAACAGTTGGATGTGAGTTGTCCACAACTCACATGTGAGAGGCTACACAACTCCGGTAAAGCACAATGTTCTTGTAACAATGACCCAGCAAATTACATTGGTTGTCACTCAACTAATAAAGCCTATGATTTGACATTGTAAAAGCCATTGTGCAAGCATCTGAGTGCTGAAGGTGTGCGCAGATGTATCCTATTAGAACAGGGATAGGCCTGCCTTTTGTTGGCATGATCAGTTGTCTCTCGCACTATGCCACAGTTATATGACAGCACATACGCAGTTACATGCATAAAAGTTTGATAGGCTACTGAACTGAAGGAGAGGCAGCATCAATTGTCACAACAGATAAGAGGTATTTTTGGTATAAAACAATATGGAGTAAAAACAAAAATTGTGAACTTGCGATTTGAATCGGTTTTCTGACCAATGTATGATGGATGCTTAATTTGGATTGCTTTGGAATCCCGCAGACCGATGCACAAGTGTCTTTAACATTTGAACCAAGGACCGATGCGCGTCAGTGAATCGTTACATCCCTAGACTCAAACTTTTAGAAAATGACAAGGGTTCATCTAGTCGGAGCATACTTTCTCAAAGCAGGGTTCATGTTGGCACAAAACTGTTTGGAAACCTTTAGAGGTACAATTTgaattatatttttttgtattaaaaaaaatgaataatggCAGCCATTTGTTCCATATCCAACTGCATCAATGCTGAATGATGTGAGCAGGTGACCCTGGCTTGTGCTCACATTCCCCCTACTCTTTATCTCGGCTATTCTGTCTATTGCTCCCATTGGCATCTGGAACAATTGAGAAACGGCTTTCCACGTTAGCTGTTTAGGATGATCCTTCAGTCTTGAGCTGTGTCGTGCTTATTATGACACTCAATAAACAACGTTTTCAAAGTTTCGCAACGGAGAAGGAAAATTATAGTCcgttcttctgtttggtgcctaatgagcAGAACCATGATGGTCAGTCGATCATGTCCATTGTTTCTCAAGACTCCCCTAAGCCCCTGTACAGTGTCTGTATGTTCATGTTTGAATGTGTCACTTAACGTGTTTCTATTCAAAGGCGTCAAAAGGAAAATGTTAATGTTTTTCTCTTGCTTCGCTTagttgtttattttctgttttctttCAAGTTTTCAGCTGTTCTAAGAGATCAATGTCTTTACCCTTTCGGTTTATATAAAGGTTGTTAATTAGAAACAAgtgaagttttttttttcttttttttactaaTCAGAAATGTATGTAGACAGGTCTCTTTTTAAATGAGCTTTTACTAAATGCACTTTGAATTGTATGATATGCTGTAGTTTTTTTTTCAGATTACTTTCATTTTCAACAATAGACCATCTGTTCTTTTTATCTGTAGAATTTTATGTAAATCAGCACAATAAAACTAGTCTGGTTTGCCAAAAATTACTCCTGTGGGGGTTCACTTTGGTGATGGTGTAGATCTAAAA

Function

symbol description
tsg101 Enables several functions, including protein homodimerization activity; ubiquitin protein ligase binding activity; and virion binding activity. Involved in several processes, including positive regulation of exosomal secretion; positive regulation of viral life cycle; and regulation of protein kinase activity. Located in several cellular components, including endosome; extracellular exosome; and nucleolus. Part of ESCRT I complex. Implicated in breast cancer; breast carcinoma; cervix carcinoma; endometrial adenocarcinoma; and prostate cancer. Biomarker of breast cancer and ovarian cancer.

NR:

description
PREDICTED: tumor susceptibility gene 101 protein

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0015031 protein transport biological_process

KEGG:

id description
K12183 TSG101, STP22, VPS23; ESCRT-I complex subunit TSG101

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564034.2 True 4137 mRNA 0.43 10 45444073 45468845

Neighbor

gene id symbol gene type direction distance location
LOC110490546 LOC106560730 coding upstream 188230 45203309 ~ 45255843 (+)
LOC110490437 LOC106584212 coding upstream 890094 44551163 ~ 44553979 (+)
LOC110490388 LOC106604983 coding upstream 971149 44464974 ~ 44472924 (+)
LOC110490326 LOC106605007 coding upstream 1483081 43955049 ~ 43960992 (+)
LOC110490316 LOC106584327 coding upstream 1493726 43947088 ~ 43950347 (+)
brsk2a LOC106560719 coding downstream 127158 45596003 ~ 46132114 (+)
LOC118940395 NA coding downstream 230352 45699197 ~ 45755983 (+)
spty2d1 spty2d1 coding downstream 1497291 46966136 ~ 46980755 (+)
uevld uevld coding downstream 1512841 46981686 ~ 47007672 (+)
cpt1ab LOC100653436 coding downstream 1665370 47134215 ~ 47205441 (+)
G148134 NA non-coding upstream 153921 45289913 ~ 45290152 (+)
G148129 NA non-coding upstream 161411 45282402 ~ 45282662 (+)
G148127 NA non-coding upstream 164850 45278652 ~ 45279223 (+)
G148030 NA non-coding upstream 253983 45189773 ~ 45190090 (+)
G148029 NA non-coding upstream 254710 45189157 ~ 45189363 (+)
G148252 NA non-coding downstream 42094 45510939 ~ 45512458 (+)
G148254 NA non-coding downstream 45901 45514746 ~ 45519843 (+)
G148415 NA non-coding downstream 70785 45539630 ~ 45539986 (+)
G148584 NA non-coding downstream 281385 45750230 ~ 45801517 (+)
G148621 NA non-coding downstream 331076 45799921 ~ 45800947 (+)
G147510 NA other upstream 572573 44870800 ~ 44871500 (+)
G146841 NA other upstream 1014680 44429153 ~ 44429393 (+)
G146226 NA other upstream 1447008 43996780 ~ 43997065 (+)
G146165 NA other upstream 1554464 43886596 ~ 43889609 (+)
G146114 NA other upstream 1644220 43799404 ~ 43799853 (+)
G148191 NA other downstream 3237 45472082 ~ 45492379 (+)
G150997 NA other downstream 2029103 47497948 ~ 47547579 (+)
G152167 NA other downstream 3087937 48556782 ~ 48557686 (+)
LOC110491026 LOC106560691 other downstream 4629571 50098387 ~ 50100624 (+)

Expression


Co-expression Network