LOC118940395


Basic Information

Item Value
gene id LOC118940395
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 45699197 ~ 45755983 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036955.1
gtgatggagacgtgttcaaccctcagttccgaagcttctctattccggTTGTTTTGTTGCCTTTAAAGTGTGTTTTATAGCCTAATAGAGTTTACCtaggatcggatccactctttgcgtccgtggactacacctctctgttcttcgtggcctttctccaCTGGAAATCTGTTGGAGGCTTGGATTTTCTGACTGACCGACTACAACattttgtatacgAGAAAGGTGTTCTGGGGACCTTTTCAAATGTCTGAAATCGCCATCTATTTCTAGTGATCAGTCAGGGAAAACTCAGGAGCCAGCTCTGAATAAGTGTAGACAGCCTGCTGCTGCCCGCTACCGCTGTGCTAATCAtcagatgaggggaggagaggaggtgggaaagggcagtatggagtgcaataaagattgcgtcatctgtggatctgttggggcagcaTTTGAATTATATggtgggtccagggtttctgggatgataatgttgatgtgagccattaccagcctttcaaataattgaatggctacagatgtgagtgctacagggcgatagtcatttagacaggttactttGTCAATCTTGGGCAACTGGGGGCCCCTGCCTTGATTGGGTAACTGATTAATAAAACTATTCAAATAAACTGCATAATAAATGAATGTGACTGGTCAATTGTTTGAGTCAGGACTGGGCCGAAGCCCGTAAGGGGCCCAAGAGGCAATGTTTATCTTTATCCAACCACATTTCTATATTGCTTTTCATAACAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036955.1 True 762 mRNA 0.45 4 45699197 45755983

Neighbor

gene id symbol gene type direction distance location
tsg101a tsg101 coding upstream 230352 45444073 ~ 45468845 (+)
LOC110490546 LOC106560730 coding upstream 443354 45203309 ~ 45255843 (+)
LOC110490437 LOC106584212 coding upstream 1145218 44551163 ~ 44553979 (+)
LOC110490388 LOC106604983 coding upstream 1226273 44464974 ~ 44472924 (+)
LOC110490326 LOC106605007 coding upstream 1738205 43955049 ~ 43960992 (+)
spty2d1 spty2d1 coding downstream 1210153 46966136 ~ 46980755 (+)
uevld uevld coding downstream 1225703 46981686 ~ 47007672 (+)
cpt1ab LOC100653436 coding downstream 1378232 47134215 ~ 47205441 (+)
igf2b igf2 coding downstream 1612197 47368180 ~ 47373699 (+)
osbpl5 LOC106560704 coding downstream 2271426 48027409 ~ 48133974 (+)
G148415 NA non-coding upstream 159211 45539630 ~ 45539986 (+)
G148254 NA non-coding upstream 179354 45514746 ~ 45519843 (+)
G148252 NA non-coding upstream 186739 45510939 ~ 45512458 (+)
G148134 NA non-coding upstream 409045 45289913 ~ 45290152 (+)
G148129 NA non-coding upstream 416535 45282402 ~ 45282662 (+)
G148621 NA non-coding downstream 43938 45799921 ~ 45800947 (+)
G148959 LOC100136012 non-coding downstream 546399 46302382 ~ 46302597 (+)
G148967 NA non-coding downstream 562067 46318050 ~ 46321610 (+)
G148968 NA non-coding downstream 566673 46322656 ~ 46337873 (+)
G149016 NA non-coding downstream 630017 46386000 ~ 46386199 (+)
G148191 NA other upstream 206818 45472082 ~ 45492379 (+)
G147510 NA other upstream 827697 44870800 ~ 44871500 (+)
G146841 NA other upstream 1269804 44429153 ~ 44429393 (+)
G146226 NA other upstream 1702132 43996780 ~ 43997065 (+)
G146165 NA other upstream 1809588 43886596 ~ 43889609 (+)
G150997 NA other downstream 1741965 47497948 ~ 47547579 (+)
G152167 NA other downstream 2800799 48556782 ~ 48557686 (+)
LOC110491026 LOC106560691 other downstream 4342433 50098387 ~ 50100624 (+)
G154859 NA other downstream 5409432 51165415 ~ 51167174 (+)

Expression


Co-expression Network