LOC118940396 (LOC106604981)


Basic Information

Item Value
gene id LOC118940396
gene name LOC106604981
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46589886 ~ 46592723 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036958.1
gatataatattagccatggagaactgcaaatatgttgctactgctctcaataacattgctgccctgaatttatcaggTGCTATTGACGAAggtgggaaaaagttgtgatggactactttctgaaCGAGGAATGCTGGCTCTCTCACTCTGAAATTAACATGTTTTATAATCAGTGGAACACAACGGGCCAAACAAGCTGTGCAAACTAAATGGAAACAACACAGGAACTCTTATAAAAGGGATTGCAGTCTGCCAtgaagctttcatccatgtatacagCTTCAATCagtagaacacacctgactctaagCCACCAGCCATACAGTCATCAAAAAGAGAGCTAGCAAGCAAAGGcagcagcgcagtcatcaactacatgcaccatttcttcaccaacGACCGAGTTGGAAAAACAGCTGTGGACCTGAATTGTGATaactgcagtggccaaaacaagaacaagtttgtgctctggtattgtgcctggtggaccaccagaatctggaccttcacttcctgatcacagCCACACCAAGTTTGTCCCAGATAGGTGCTTCGGCCTCATCAAGCAGTGCTTCCAaaagaccagagtgaacactgagattgctggtgttgtgaaggacagcgctgtgacaggggtcaacatcccacagctggttggactggaggatggtacaGTGCCGGTGGAAAGCTATGGTTGGCAACAACACCTTACTCTGTACTCCAGGCCTCTTCCACAGATCAAGCGGTATCAGCActtcagCTTCGttgctctggagcctggtgttgtcgCCAAGGAGTGTTCGGACTGTtgggaccaggtttcagctgctgcgcaacgctgacatccttcctctcatagatggtctgcctgttaaagcaccacctggactggacacagctagatAAACTATATTTTTGACaagatcagggagttttgcgATGAAGAGactatggacatcacatgcccttTTACCAAAGTcaaggacaggacagaagcaggCTCCCTGCTTGGGAATATCGATTCCCTTTGTTCATGCGTGGTTTGGACGGACCAGACATGAGCTCTATCTGTAGTGCCTCTATTCAcatgactctctcctaacacacacgCCATATGTTGCTGATACTATTGTTTACCCcgctgctcagccactttacctctGATTGTATGCATTTAATTACCTCGTCTGTCACTGATATCGTTATTGATATAGTttttttacatactgtatattttatctatattgacactatctatttctgatattgctactatgcaagtaaccatttggctgtatcatttacaccttctgtagagaccatCCACTTAGCAAGATATTGATATATAAAATCAATATTGATGTGTGGTCGTAACATGATTTTATGACATACCACAATAATATCTTGTGACTGTATCCAGTGTCCAACACATAAATATATGGAGCATGCATCAGTTTATGTACTGTAAAAAAAACTCACTCAGGTTTCAACTCAGGTTGCATGGCCTTAATTTAGGTATGGAATACTATGTGATAAGTGCGTGTGTAACAGTATATAAAGTATGCTACTGTAGTGCTGTGAAGGTATTTGGGCAGTGAtataaagtacttcagtaaaaatactttaaagtattacttaagtagttttttgtggtatctgtacattactttcCTATTTATACTTTCCTACCCTATTGAACTTTTACTTCGCTACATTCGTAAGGAAAACAAAGtgcttgttacattttgacaggaaaattgtccaattcacacacttatcaagagaacatccctggtcatccctgcggcgtctgatctggcagactcactaaacacaaatgcttcgtttgtaaattatgtcagagtgttggagtatGCCCCTGGCTCTCCGTCAAGAATAATTATGAAATTGTGCaatctgatttgcttaatataaggaatttgaaatggtttatatttcaacttttacttttgatacttaagtacattgtgcccctggctatcagtcaaataattaaaaaacaaatacaattgtgccgtctggtttgcttatataaggaatttgaaattattattttactgAAGTGACAATATAGTACTTTTTAAGcg

Function

NR:

description
PREDICTED: uncharacterized protein LOC106561205

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036958.1 True 2111 mRNA 0.41 3 46589886 46592723

Neighbor

gene id symbol gene type direction distance location
abtb2b abtb2 coding downstream 300543 46139256 ~ 46289343 (-)
ldha ldha coding downstream 1097968 45469242 ~ 45491918 (-)
si:ch211-272n13.3 LOC106560721 coding downstream 1194918 45278394 ~ 45394968 (-)
LOC118936755 LOC106560723 coding downstream 1418030 45171198 ~ 45171856 (-)
LOC110490531 LOC106560723 coding downstream 1421626 45134476 ~ 45168260 (-)
tmem86a tmem86a coding upstream 279572 46844180 ~ 46921608 (-)
si:dkeyp-19e1.3 LOC106560684 coding upstream 440286 47033009 ~ 47130517 (-)
si:ch211-236l14.4 LOC106560706 coding upstream 634643 47227366 ~ 47311705 (-)
mrpl23 LOC105008177 coding upstream 1272089 47864812 ~ 47998457 (-)
phlda2 phla2 coding upstream 1682351 48275074 ~ 48277572 (-)
G149973 NA non-coding downstream 16061 46573506 ~ 46573825 (-)
G149970 NA non-coding downstream 18653 46571005 ~ 46571233 (-)
G149969 NA non-coding downstream 18923 46570411 ~ 46570963 (-)
G149967 NA non-coding downstream 21306 46568361 ~ 46568580 (-)
G149966 NA non-coding downstream 21935 46567751 ~ 46567951 (-)
G150035 NA non-coding upstream 62815 46655538 ~ 46745358 (-)
G150154 NA non-coding upstream 199997 46792720 ~ 46792934 (-)
G150267 NA non-coding upstream 221480 46814203 ~ 46814422 (-)
G150285 NA non-coding upstream 249614 46842337 ~ 46842591 (-)
G150261 NA non-coding upstream 268124 46860847 ~ 46866381 (-)
G147800 NA other downstream 1726327 44863085 ~ 44863559 (-)
LOC110490449 scmh1 other downstream 2011131 44571948 ~ 44606865 (-)
LOC110490352 NA other downstream 2153769 44434790 ~ 44464449 (-)
LOC110490298 LOC106605170 other downstream 2806167 43776063 ~ 43783884 (-)
G150290 NA other upstream 253429 46846152 ~ 46849616 (-)
G150618 NA other upstream 372011 46964734 ~ 46993665 (-)
G150675 LOC100653436 other upstream 602170 47194893 ~ 47205433 (-)
G151474 NA other upstream 1258062 47850785 ~ 47851348 (-)

Expression


Co-expression Network