XLOC_020639 (atad3)


Basic Information

Item Value
gene id XLOC_020639
gene name atad3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5156 ~ 7050 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040837
ATGTCGTGGCTGTTCGGGCTTAATAAAGGCCAGAGCGGCGGCCCACCGGAGCTCCCGCCGCCGCCCGCTCCCCCCGCTCCTCCCGGCGGCTCTGGAGCGGCGGACAAACCCAAGGACAAATGGAGCAACTTCGACCCGACTGGGCTGGAGCGCGCGGCGCAGGCGGCCAGAGAGCTGGACCAGTCCcGTCATGCCAAGGAGGCTCTGGATCTGGCGCGGATGCAGGAGCAGACGGTTCAGATGGAGCACCAGGGCAAGATcaaggagtaCGAGGCAGCAGTGGAGCAGCTGAAGGGTGAGCAGATCCGCATTCAGGCTGACGAGCGCAGGAAAACCCTGAACGAGGAGACCCGACAGCACCAGGCCagggCGCAGTATCAGGATAAACTGGCGCGGCAGCGGTACGACGACCAGCTCCGACAGCAGACACTGCTGAACGAGGAGAACCTGCGCAAACAGGAGGAGTCCGTGCAGAAGCAGGAGGCCATgaggagagccACCATTGAGCACGAGATGGACCTGCGGCACAAGAACGAGATGCTGCGCGTGGAGGCGGAGTCTAAAGCTCGCGCGCGTGTGGAGAGAGAGAACGCTGACATCATCAGAGAGCAGATCCGGCTGAAGGCGGCTGAGCACAGACAGACCGTGCTGGAGTCTAtacgg

Function

symbol description
atad3 Predicted to enable zinc ion binding activity. Predicted to be involved in mitochondrion organization. Predicted to be active in mitochondrion. Orthologous to human ATAD3A (ATPase family AAA domain containing 3A); ATAD3B (ATPase family AAA domain containing 3B); and ATAD3C (ATPase family AAA domain containing 3C).

GO:

id name namespace
GO:0007005 mitochondrion organization biological_process
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1826 Predicted to enable zinc ion binding activity. Predicted to be involved in mitochondrion organization. Predicted to be active in mitochondrion. Orthologous to human ATAD3A (ATPase family AAA domain containing 3A); ATAD3B (ATPase family AAA domain containing 3B); and ATAD3C (ATPase family AAA domain containing 3C).

Ensembl:

ensembl_id ENSDARG00000086848

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040837 True 663 mRNA 0.63 6 5156 7050

Neighbor

gene id symbol gene type direction distance location
XLOC_020640 mrpl20 coding upstream 2115 9165 ~ 10826 (-)
XLOC_020641 NA coding upstream 20096 27146 ~ 36116 (-)
XLOC_020642 CABZ01085140.1 coding upstream 37315 44365 ~ 50878 (-)
XLOC_020643 CABZ01085139.1 coding upstream 49594 56644 ~ 57177 (-)
XLOC_020644 CABZ01101813.1 coding upstream 69419 76469 ~ 80533 (-)
XLOC_020646 NA non-coding upstream 94032 101082 ~ 101447 (-)
XLOC_020657 NA non-coding upstream 306660 313710 ~ 315380 (-)
XLOC_020664 NA non-coding upstream 385569 392619 ~ 395900 (-)
XLOC_020672 NA non-coding upstream 652867 659917 ~ 697504 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00661361_00666431 ATAD3A.S, ATAD3, ATAD3A.L, ATAD3B, ATAD3A coding CI01000186 null 661032 ~ 666460 (+)