spty2d1 (spty2d1)


Basic Information

Item Value
gene id spty2d1
gene name spty2d1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46966136 ~ 46980755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564096.2
TATTCTTGCCTGTTTCACGTTGGTCTACGCAATTAAAATAATCTGTGCTACAAAAGCAGCACGAAAATAGACACTTGTCTTTCCTCGTTTTATCTTTTCGTTTTACTTTATTTTCCCTCGCCGTAATTAGTTGTTATCAATTTACTTTAGTGTTTGTAGTTCACGTTTGAAATTGATTAGAACGACGTAATCCCAGTGAGGGTTTACGTGGCTAGCTAGGCTAACAAGTGTGGCTAGCTAAACTAGAAACGCCAGCTGCCTTGTTTAGCAGGTTGAGATAGGTACTTAGTTTTGCTAAATTCAAATTAGCAAGTGAGTCATTTTGTACCGTCGTATTTTATGAAGACATGTAACGCCTGGTTATGGTTGACGTTTCTGGAAacagctagctagtagctaggtAGCCTGTCATACTTTTCATTCTGGATGGGAATATTGAGCTATCCACCCAACCTTAGCTAACCATTCACCACCTGGCAAAAAAATCACCATGGACTTCGAAAATGTCTTGTCGATCGCCTCCCAAAACCAGGGCCTCAGTAGCGTACCGAAGCGGTACAGTTTACAAACTGGACCACCCAAAAAGGACCCTAAAGTGAAAGGTGTCAACTCAGCAGCTGTGCAGGCTTTCCTAAAGAAACAAGAGATAGAGAGTAAAAAGAAAGAGGCCATGAGTATGAAAAAGAAAGAGGGGCTTCTCGCCAAAAGGGTGGAGCTAAAGTCTGACCGCAAGGCTCGAGCGATGGCATCTCGAACCAAGGACAACTTCAGGGGCTACAACGGCATCCCTGTGGTGGAGGAACCCAAGAAGAGGAGATCAAAGGGGGAGAGGGGCGAAGAGCAGCAGAGGAGTGACACTTACGACGAAGATGATGAGGACACGTATGAATACGCGCAGACTGACTCTGAGCCCGAGTCAGAACCGGACCCGGAACCCCAGATACCCAGACAGGCTGTTCCCAACTCCAAGCCCTCAAAGAGACCCAGCGGACCATCTAAACCCGCCCCTCTACCCATGAACTTTGCAGAGCTGCTCAAACTGGCCCAGAAGAAGCAGTTTGAGCCAGTGGAGGTGAAAGCCAAGCCAAGCAAGAAGGGAGAGCCGGAGAGGCTGCGGACGGCTGATGAGATACGTGAGCTGGACCTGGAACGCAAGGCTAAGCGGCTTGATAAAGGTAGCAGAGACTCCAGACCccaggagagagaacgagatagAGATGGGGACAGAGATAGGAACAGAGATGGAAGAGACAAATCCCAGGCCAGCTCAAGCTCCTCAAGGAAAAGCACTTCTGACAGAGATGTAAGGAACGGGAAGCAGCCACACAAGAGCTTGTCGGAGAGGCCCGTCCCCAGTGGGTCGGGGAGGAAGCCAAAGCCCCTGCTGCCATCTTGCTCGTCGAGCGAGAGAAGCCACCATGGTTCTGCCAAGCCatcacaggacagagacagagaccgagataGAGAAAGGTCCAAAGCAAAACCTTCTCAGAGCTCCTCTTCCAGCTTGTCAGGTGCCTTAAGCAGAAAAGCCCCCACCAAAGGAGCCTCCTCTCAGGTCTCAGCCAAAACCCCCACACCCAGGCCCACTTCAGCAGGCCACAAACCCACTGCCACAAGTGACCTTAACACCCCCAGGAAGGGAAACGCCTCACTAACTCCAGGGCGACCCGGCAGCTCCGGGATGAGACCCAGCACAGCTCTGAGTTCCGTCCAGGCTAGACCACAGGGTTTGGGCCAAAGCAGGCCACAGCAAGGGGGCTCTTTGGGGCAGGCTCGAGCCAGCCAGGGCAGCTCAGTGAGGGGAGGACCCACCGGAGGACCCTCCAGGCCCGGAAAGGGAGTACCGGCACGACCTGGTGGTAGCTCCACGGCAAGACCAGCGAGTAACGAACAGATGAGACCCACTGCAGTCGGTCCTCTGAGGCCAGGGGGGCCACCTCAGGCCAGGCCGGGTGGAGGTGGTGTCCAAGGTCGCCCTGGTGGCGGAGGGGTCAGACCTCCAGGGAACGCACCCAGTCGGCCTGGGGGTGGGGGACCCGTGCCCAGGCGGCCAGCCAGCAGTATGGGCTCCGGGCCTGGGAGACCCAAATGCACTTTGGTGGCCGAGACCATCTCATCCAAGACCTTTGGTGGAGGCAGGGGAGCGCCACCTAGTAGGCCAGGCATGCCACCTAGTAGGCCAGGCATGCCACCTAGTAGGCCAGGCATGCCACCTAGTAGGCCAGGCATGCAGCCCAGCTCAATGATGAGACCTCAAGGCATGATTCGTTCACCAATCACCTCGGCCTACAAGAGGAAGTATGaggacgaggaggacgaggagtaCGACTCTGAGATGGAGGACTTCATCGACGATGAAGGGGAGGACCAAGACACAGTCTCCAAACACATCAAGGAAATCTTTGGCTACGACCGGACCAAATACAAAGAAGAGAGTGACTATGCATTAAAATTCATGGAGAGCAGTTGGAGAGACCAGCAAAAAGAGGAGGCTAGGAGTTTACGCCTGGGTAtcaaggaggatgaggaagagttgcgcttggaggaggaagagatgaaAAAGAAAATGTCAATGAATGCGAAACGGAAAAAAGTTTGAGGACACTAAGTTTAACACAAACACAATGCAGCCATttcctggagtggggggggggggtgtagggtGAATTTGCCCCTAGatgtcagtttagcattttccctgCTAGTGATAaggattgggggagggggagatgatCCTAAATCTGCACCTAGGGAAAACTTCACCCTGGAGTGGAATGGGGTGGTCAGACCAGTAGCCACTTGCTTCtgttacattatttatttttcccgTTGGAAAGGGGCAGGGTTGCACTATCAAGTGTTTCAGTCTTTTCCTAGCTGAGCCGCAGAGAAACGATTTAATATAATACCGATTATGACCTATTTTTGAAACCCATAGAAAATGACAGAGCTATCATGTAAAGTGTGATTGCCTTGCCAAGTTGTGAATGGCAATCATGTTGTATTTTttccccatacagaaccaaaaaCCCACTGgtccattttttaaatgtattcttCTTTAATGTAAAGGGGCagtcagcagttgaaacaataaagcGGTGTCCCCGCCTCTTGTTTCAGTAAATGCtgtgggatggggctggagaaatgtaaccactctcaaa

Function

symbol description
spty2d1 Predicted to enable DNA binding activity; RNA polymerase I core binding activity; and histone binding activity. Predicted to be involved in nucleosome organization; regulation of chromatin assembly; and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in axial mesoderm; hatching gland; notochord; and polster. Orthologous to human SPTY2D1 (SPT2 chromatin protein domain containing 1).

NR:

description
protein SPT2 homolog

GO: NA

KEGG:

id description
K15193 SPTY2D1, SPT2; protein SPT2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564096.2 True 3170 mRNA 0.52 6 46966136 46980755

Neighbor

gene id symbol gene type direction distance location
brsk2a LOC106560719 coding upstream 834022 45596003 ~ 46132114 (+)
LOC118940395 NA coding upstream 1210153 45699197 ~ 45755983 (+)
tsg101a tsg101 coding upstream 1497291 45444073 ~ 45468845 (+)
LOC110490546 LOC106560730 coding upstream 1710293 45203309 ~ 45255843 (+)
LOC110490437 LOC106584212 coding upstream 2412157 44551163 ~ 44553979 (+)
uevld uevld coding downstream 931 46981686 ~ 47007672 (+)
cpt1ab LOC100653436 coding downstream 153460 47134215 ~ 47205441 (+)
igf2b igf2 coding downstream 387425 47368180 ~ 47373699 (+)
osbpl5 LOC106560704 coding downstream 1046654 48027409 ~ 48133974 (+)
fcsk fuk coding downstream 1414228 48394983 ~ 48447787 (+)
G150324 NA non-coding upstream 12289 46953612 ~ 46953847 (+)
G150319 NA non-coding upstream 23046 46942856 ~ 46943090 (+)
G150317 NA non-coding upstream 24687 46941181 ~ 46941449 (+)
G150313 NA non-coding upstream 34812 46931101 ~ 46931324 (+)
G150227 tmem86a non-coding upstream 89059 46872295 ~ 46877077 (+)
G150339 NA non-coding downstream 25584 47006339 ~ 47006712 (+)
G150467 NA non-coding downstream 233343 47214098 ~ 47220529 (+)
G150478 NA non-coding downstream 246630 47227385 ~ 47230109 (+)
G150488 NA non-coding downstream 265891 47246646 ~ 47246955 (+)
G150564 NA non-coding downstream 366515 47347270 ~ 47347545 (+)
G148191 NA other upstream 1473757 45472082 ~ 45492379 (+)
G147510 NA other upstream 2094636 44870800 ~ 44871500 (+)
G146841 NA other upstream 2536743 44429153 ~ 44429393 (+)
G146226 NA other upstream 2969071 43996780 ~ 43997065 (+)
G146165 NA other upstream 3076527 43886596 ~ 43889609 (+)
G150997 NA other downstream 517193 47497948 ~ 47547579 (+)
G152167 NA other downstream 1576027 48556782 ~ 48557686 (+)
LOC110491026 LOC106560691 other downstream 3117661 50098387 ~ 50100624 (+)
G154859 NA other downstream 4184660 51165415 ~ 51167174 (+)

Expression


Co-expression Network