si:ch211-236l14.4 (LOC106560706)


Basic Information

Item Value
gene id si:ch211-236l14.4
gene name LOC106560706
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47227366 ~ 47311705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564132.2
GGCTCCCTTATCACTATATCTTCTCTACTCTACCTTTCTGAAGAAACAGCCTGGCGTTACGTCAGACCCGGGCAAAAACCGCAGGGCAAGCAAGTCGGAGTCTAAGGAGCTACCAAACCCGGGTTAAGGCTGCTCActcacagctcagcgttcaatgtCATTAAAAAGGAACACTTTTAAACCGCGGCAGCATGTGGTAAGTCAATTTTTCTCTGATTCGTTTTTCCAGCCGTtgggattattttttttttttaccgtttTCACTCACATGACATTTTGACCAGTTGTCTCTGGCTGGCATAATTGCGCAAAAACTGCGGTAACACCGCGTGTTGGAGATTGTTCAAAAGTTGACTAACAAACGTTCAGCCACTTTGAAACCAACGTGACATGATGATGAGGCACCCAAGCTTTTCAACAACCACTTGCAGagattttttcttcattttttaaatttgattcttgatcatttcaaaaacaaacatGCCTCATGCTCGAAATAGGAACCCTAGCCCCATCCCTGAGGTAACATGGGATACGGGATTGAAGGAGATGAACGAAACTTGGAAGGGAGCTATTGCCTGTCTCGGGGTGGCAGTCTTTTTCGTCATGACCATTGGAATCATATACTGGCAAGTGGTGGATCAGCCTAACAAGAACTGGATCCTAAAGGGGAGTTATAGCGGGCTTATCTGGGAGAGACGGACTCACTCTCTGGTCATACAGACACTGACAGAAGACAAGACCTACGTGGAGATTGACGTGGGCAACGTGGGGAACCCCGATATTGAAGTGCCGTTTGTCAGGAACCTGTGCTGGCTCAATAAGACGGAGTTCTGCTACACATGGGATTCGGTGGCGGACGTTAAAATCTCTTTGGAGGTGAATGAGGCGACGGAGACGGAGTGTTATAGCATGACATGGTCGCCGGTGCACTGTCATGTGGAGCTGAAGGACTGCTTCTCCATGGCTAACATGTCGTGGTATGGTGGCGCCAGCGTCCAGAACCAGAGCTGGCCAATCAACGAGCAGAATGTCACCATGCAGCCGTTCACTGTTAGCAACCTCAGGGACAACCCGTCTGGTTTTGGCTCAGTCCTCGAACGCTACTTCCTGGGCTCGTCAGgtGTAGCAGTGCTGGTGTCCCCAGATGTTCCTCTTCAGGTGGGAATGGAGAGCCGACAGCATTTTTGCCTGCAGTCTCCCTCCAGCCTGGAGCGCACCCCGCTTCAGTACACTGTGTGCGTGGGCCACAACATCAGGGCTGTACACCAGGAGGCGCTGCAGCAGCTCTCATCGCCCAGCAGGGAGCTGCCCAACATGGACGTCTTATGGTTGCCTTTCTGGAAGCTTCTGGCCAGTGTGGACTCAGGGCCAAAGGTAGAGAGGGAGTTGAGGACCTTCTCCAACCGTCTGAGGAGACACCAGCTGGGAGAGGGGGCCATCAGCCTCAACGAACATTCCACCGCCCTCCTCGCAGACATGgaCCAAGACTACCTCGCCAGCAGGAAAAGAGGGACATCCAAGAGACAGACCAGGGACTTCAGGGACCTCTCACTGATCAAGCTTCTAAACATTTCCATCACCCTGTCCCCGTTCCTGAGCGTGGACACCACCCAGTTCCACAAGTCCCTGCTGGACGGCACTGAGGCCTATTGGCTCAGCCTCCCCGTAGCCCCACAGGGGCGACTGgtGCCTGTGCTGACCCAGTGGCGAGGGCAGTTCTGTGTGAAACTGAACATCAGCAACCCAGAGGCGGTCAGCTGGTTCCTGGACCGGGTGGGCTTGCTGCAGGCCCGTCTGGGCATGGAGTCCATCCATCTGGAGGGGGCAGAGGGGAACCCGCTGGACCTAGGCGGGGGAGACCAGTATATTGGCCAGCTGGCAGATGTGGCAGCCAGGATAGAAGAGTCAGCTATCATGAATGCAGGGACAAGGTCGAGCCACAAGCCTGTGTTTGTGCGGATGCCTCCTTTGCAGTCTGACTGGAGCTCCTCTGGACTGAAGGGCCTCATTCCCTCCTTGCTGCACCACACTCTGCTGGGGTACAACTTACTCATTCCCGACGCAGTAGgTGGTTCTCTATCTGGGGACCTGGTGACTGACGAGGAACTGTTCATCAGGTGGCTGCAGATTGTAGCCTTCCTCCCCGTCATCAGCTTTGAGACACCTCCCTGGGTCTGTGGGGAGGACCGGGTGCTGAACTTGACGCGGGCTCTCATCGCGTGGCACCAGGACTTTGTGGTTCCACTGGTGACGAGGTATGCAGAGGACTGGATGACCTCGGGGAGCCCAATTTACCGGCCCCTGTGGTGGCTCAGCCCTGATGACCCCGCGACCTTCACCATTGATGACCAGTTCCTCATCGGAGACGAGGTCCTTGTTGCCCCGGTAATAGAGAGGGGGACAGTACGGAGAAATATTTACCTGCCCGACGGGGGCTTTCAGTGGCAGGACAGCCGCAACGCCCAGGTGTTCGACGGGGGAACTCTCTTGGAGGACTACCCTGTTGCCCTCGAGGAGGTTGCCATTTTCTTACGGAGGAGATCTTGAGGCTCAAGTCACGTGATTTATACGTGACCTATCCGGATACTAGTTTCGAATCttttattttatgttttactCGTGCTGTTCTCAAGTTGCACTTTTCCACAAAGACAATTGACAGAGGCTCAAGACTTCTTCTTGAGATTAGATGTGAATATTTTTATACTTGCACTTTACAATTCAGAACGATTTGTATTTTATTGACGTCgttttcttctcttttcttccttTTTTAACTTTAATCTGCTGCACCTCTCGGCTGATTGTTTCAGGACTTCTTTTTTGTTTCTTCTAATCATTGCTGTTCTTGCTTTTTTTGTATCTAAGAAAGAAACCTATGTGTTTACATATGATTCATTTCTAACGTTTAACTGCTGCCGGTTCTCATGGAGACATAGAGTACCAACGCAAGCCCCTCGTTCGCTTAAAAAGAAAAGATATGAATTTCTAAAGAAGACCAAACGAAGGAAAAGAAACAGAAGAATATGGTTTCTGCTAACGGAGAGCCTGGAAGGAATGAATGAGATGTTTGCTTAATATGAAAGAGGCTGAAGCAGCTTGGTATGTTTCTTTCATTCTTTGGAACAGCTTTTACTTGACCTAGGCTTAGAGCTGATGTATGATGAATGTACCTCAACTTCAGTTTTTTCATTGCTTTACTACGCTAACAATCAACACTTACAGACTTCGAGACACCCCTTTCCTTTAAAGCACTTATTTTTTCAACTCATGCTCAAACAATATGCAGAATATAATGCTAATATTCTTTATTGTACTTTACAACCTTAACATACACTacttgaccaaaagtatgtggacacctgcaggtcaaacatctcattccaaaatcatgggcattaatatggagttggtcccccctttgctgctataacagcctccactcttctgggaaggctttccactagatgttggaacattgatgcgGGGAGTTGCTCCCAtccagccacaagagcattagtgaggtcggcactgatgaTGGGTGATTAGGGCTGGCTTGCAGTCAgcgttacaattcatcccaaaggtgttcgatggggttgaggtcagggaactgtacaggccagtcaagttcttccacaccaatctcaacaaaccatttctgtatgggtctcgctttgtgcacgggggcattgtcatgctgaaataggaaagggccttccccaacctATTGTTGGAAGCTCAGAATTgtcaagaatgtcattgtatgctgtatcaTTATCATTTCCTttcaaaaacagccccagaccattactcctcctccaccaaacattacagttggcactatgtattgaggcaggtagcgttctcctagcatccgccaaacgtccgtcggactgccagatggtgatgcgtaattcatcactctagagaacccttttccactgctccagagtccattggTGGTGAGCCTTACACCACTCCaactgatgcttggcattgcgcatggggatcttaggcttgtgtgctgctactcggccatggaaacccatttcgtgaagctcccgacaaacacttcctgtgctgacgttgcttccagaggcagtttggaacttgttagtgagtgttgcaactgaggacagacatttTTGTGCActcttcagcactcagtggtcccgttctgtggcTGTCTGCTGAATTTTttacacttgtcagcaacaggtgtggctgaaattgctgaatctactaatttgaatgggtgtccacatactttcgtaTACATAGTGTAGCTTTTCAAGCTCTATTCTGGTATAAGCAACCCATTTGAGTGCCTTTTTTATACATGAACTTGAACCTAAACCACTGTCCCAGCAAGAGCATGCACCATACGCAACAGATGTTGCTTATAGCAGCTTAGCCCACTCAAACCTCATACTCAACATGCTGTCTGTCTTAAAACGTTTTAATCGTATGGTCATGTTTTACTGGCACTGCTGCTGTGTTGGTGTGCTCTTTCGTGGTAGCCAGAGGAAGCTCTAAAGAAAGACACCAGGCTCTAAAGGTGGACGCCAGTTGTAATGGAGATTCAAATAAGACAGGGATGTTCTAAGGTGCCCCAAAGTACCTGTATATTTCAATGGTTGGAAACACCTATGTACTGTTTGCGCTGTCATAGCAACCGTTGCAGCACAGTTTGGATGCAGATTAGAATGACTATTGTCAAAGAATGCAAGCCCCTCCCCCAATTGTATACAGGGTGGATCACTATTGAGACCAGGATCTCATTTGCAAGGGAGCCCGGTGAACAGGAACATACAATAAATAATATCAATACAATAAATACAATAAGAGTCATCAAAACAAACAACTCACATATCACCTCCCTTAAACTCAATCTAAACTGTCCAATTCAGACAAGCGAGTCAAATTTCAAGGTGGCCTGAAGGGTATTCCATGACCTGGGGGCATAGAAACATAAAAACTAAAGGCATTTTTACCCAGGTCAATGGAGACGCATGGGACCTCTAGAACCAGCCAGTCCAGACAGTGGGTCTGAAAATTGCTGGATCTCCAGTTAATACGGGAGCTGAGTTAGAAGAACCGCTTTATATACAAAAAAAGTAGCCACCGCTGGGCCCTTCTGGTAGTCAGAGACTCCCAGTCAACAGAGCTATAGATAATGCAGTGGTGTGTAAAAAACATTGTCCCCAGTGATAAAGCGCAGTGCTAAATGATAGACTGGTTCGAAAGGGTTTAAAGCAAAGGCTGTGCATGTAGATTATATCGCCATTATCAAGTACTGGGAGAAGCGTGGCTTGAACAATCCTCCTTCTACTTTCCAAAGTGAGGAAGGATTTATTTCTATAAAAGAAACCAATCTAAATTGTTTTTCAACGTGTGCTTTAAAAGAGAGCTTATCGTCAATCCAAATCCCCAAGTATTTTTAAATGCGGAACTTGGGGCTCCATTCAATTAGCAAATATGCAAGTCCTCAGGGTCAATATTAAGAGACCTAGAGAACAACATACATTTGTTTTTATTAGCATTTAGCATTCATTTAAGATCACTAAGTGATTTTTGAATTGAGTCAAAACCAGGATGAAGGTCATGAATGGCCTGCTGTAATGAAGGTACACAGAAGTAAATAACTATAATCCACGTAGAGATGAATGTTGCAGGTCTTAACAGATAGACCAATATTATTTACATAAATAGTTGACAACGGGGCCCAAAATCACCCTCTGCGGCATACCTTCGTAATTTTAAGGAAACTAGATTTGATACCGTCAGTAAGCACACATTGTGTCCTGTCCGTTAGATAGTTCTTGAACCAATTGCAAGATGCCTGATCACGGTCTATTTCAGAGAAACTTTGAACAAGTAAAACATGGTCAATCATATCAAATGTTTTCGATGGGTCAATAAATAGGTCAGTACACATATTTTTATGGTCTAAACAATATAGCACATCATCTATGTtcgggtctaaaaccagacttaTGGTCATTAAGAATAGAATGAGAAGGAAAGAAAGTTTCAAGCTGAGAGTTGGCCAGGGACTCTAAAACTTCGGCAAGGCAAGATAGCTTGGAAATTGGATGGTAGTTATCCAAGTCAGAAGGACTGTGTAGGAGGAGGACTTATGCCATTTTCCATATAACTCCAGAAACAGAAACAATTGGCAAGTTAAAAAATATAGCATAAGGATTCTGCAATAAGTGGGGCAGAAATCTGCAGCAGAAAGGGATCAAGTGAGTCAGCTacagccattttttttttttttttttttttacatcgatCTTCAATAAGGCACCTAGTACATACTGTAGACATCCAATGGTTGAAATGAGGAATGTGTATCTGGGAATGTATTGTTCTCTGCAACCTGGCTCGAGGTGGAATCAGAGTTTTCAGAAGCTATAAAATCAAATAGGTGACCCCCAGAGGCAAAGTGGTTATTAAAAATGTCCATCACAAATGTCCATCTTATCTGTTATGGGAACAGAGGCTGTCGTAACGTGCTGGAGTAATGAGGGGATGGAGTTTTGTTTCAGAGATTTGACTCCCTTCCAGAAGGCAGCTGGATTCTCACCAGTTCAAGAAGTATGTCGATTTAGCCTTTTTAACCAGGCATAGACATATTTCTCAAGCGTCTGAAGGACTGCCAGTCAGACTTAAATTCAGTCATCCTAGCCTTAGCCCAAGCTACATTTCTCTCCAGAAGTATTTCTGATAGTTCATGCGCGAACCAGGGATTAGCTTTATCCCTTACCCTTAGTTtcttgaatggagcatgcttatctgCAATAGAGCAAAGAAGTAAAACAGTTTAGGGCCTGATGCGAAATGCCTATGGCGGGTGACGTACTTCCATGGTTGGGCAGCAGAGTATTATCCTCAATCCACCAGAGGCAACGGTCCTGCTCCATTTCCCAGGGGAGTGGGAGGCTTCTTTGGGGAGGGGTCCCTGGAAGGCATTGGCCATTCAGTCAAGGAGTGTTGAGATGGTGGTGATACTCTCAACACATTGAAACGAAGTCCAGCCTGTGGTGTGGAAAAGGTAGGCGTGGGTACTTTCCCCAGTAGATTGTGCAAGTTTTGAATCTGTTTACTAAGAGTAGTCACTTCTTTCCTATAGTCTTCTGCAAGTAAACAATTGTTGCCTCAAAACTCTGGTCAGTCCACATTGTCCCGGAAGAGAGCATAGTAAATACAGCTCCTGCAGCACAAGAAATGCTCGCTTTTTTCCCTGAACGGGAAAGCATCCATGGAAAGAGACATAGGAACTAAAGAGATAGTGATTTCAGGCAGAGTAATAAAATAGACAATAACGTATTTTCCGGACCTATACAGGCTGTCGGTAAATAGACCCAATATATAAATGCACCAAATACAAACAAATAAATTAAACGAAATAGACTCCAGCCTGTTAAACTTAACTTTCTTCTACAAACAATTCAGTCTCAAAGAAATGtgtgcgctctctctctttccagtaACCCTAACCTTCATGGGATAGTTCAGGGAAATTACATATTTAGATATGTTTCCTTGAAAGCAGTCTAGGTACAATGAGTGACTGCAATCCACACTGCAATCCAAATCATCTCTTAAATGGATTGTGTTGCTCAATGGTTCAGATGATTTTGGCAGGACATTTGAAATGGGGATACTATTTGGTCCCAAAATGCTAATATGAACAAAACCAAATTGTGGATTGCAGTCATTCAAAGTCAGAATTTCTAAATATGTAATTTcactgaactatccctttaaagtgATAGTTCACACAGCTACATCTTGATTACTTAGAGTAGAAATTCAATGTTTCTGTATTATTCTTTCGTAATATGATAGCATATTTGTCTAACGTAAAGGGCTGGTGGGAACCATTCATTGGATCCATTAATTGGCATCAGTGCCCTTATCAAGATAATATTGAGTTGATCTCTATGAATTATTAGCTACATCCTCTTCTCAAAGCATCTGATTAATTTACTGCAGTAGTAGAGTTTTATGAAAAAaattctcaaatatattttgaaggCTACACAGCAATTGAAAGACGGATCTACTGTAAAGATTTTGAATTAACATTTGACTGAGTTGTCAGAGTTAACTGCTATACAGTTAGATAGACAGCCAATCTGGTTTAGAAAGCATGTGATTTTTATAGAGGCTGTCCAAATATAGAGCAATTGTCTCCACACATTACAGACCTGCTAAGTGATTTGGTTAGTGAATTTATTATTTGATTTACTGTAACTATACCCTCAgttcacagacagatttttcacctcatTCTTTATAtccagcaccataccagtgtaTGTGAAAACGGTGCATTTCTAAGTTTTGTAGTCAGAAAGATAGAAAAGGTTTTCAGCAATTTCTCCCGGTGATGtaattttctaaaaaaaaaaaaaacgtttcctTCGTAAGAAACCAAAAACCAGTCGTTGCTTAACAAATCAAACCTCGGTACGGATTCTCTCTGTTTTGTTTGTCATCCTGGGACCTGAACTGCGTCATTTAATTACACCTTTCATTTTGACAACTGAATTGATTTACTTTAATTTGACTTGTTTTCTTCATACAGAAAGAACACTCAGGTCTACTGTTAGTAGCTAATCAAATCACACAATGTCTTAGTGCCACAGCACATTGTGGGCATGTGTCTTAAACGTCTTAAACCCTATTAGAGATTCATGTACTTAACCGTTATGGCCAAATGCAGTAGAACTAGCTGTTTATGTAAAGAGCTTTTCTTTTTTCCTGCTTATGTTTTTCAGTGTATGCTGTTTTATGGTACTGTAGATGTAAGTTGCTAAGAAAAACTTGGAGACACTTTTCCCACCACACGCTGAGCAAGCGTGATGATATGTACCTTGTTGTCAGCCCTCTCTTATACAGTAGGAGGACGGACCGGGTATTACCATAACCACATCAATAATGTACATATTTCAATGACTGCGcaattacatgttttatttttctcTTCTGTAAATTAGAGAAATAGAATCGACAAACTGCAATAAAGTTTACATTTTCTTACA
>TU172669
GTTTCTGTATTATTCTTTCGTAATATGATAGCATATTTGTCTAACGTAAAGGGCTGGTGGGAACCATTCATTGGATCCATTAATTGGCATCAGTGCCCTTATCAAGATAATATTGAGTTGATCTCTATGAATTATTAGCTACATCCTCTTCTCAAAGCATCTGATTAATTTACTGCAGTAGTAGAGTTTTATGAAAAAaattctcaaatatattttgaaggCTACACAGCAATTGAAAGACGGATCTACTGTAAAGATTTTGAATTAACATTTGACTGAGTTGTCAGAGTTAACTGCTATACAGTTAGATAGACAGCCAATCTGGTTTAGAAAGCATGTGATTTTTATAGAGGCTGTCCAAATATAGAGCAATTGTCTCCACACATTACAGACCTGCTAAGTGATTTGGTTAGTGAATTTATTATTTGATTTACTGTAACTATACCCTCAgttcacagacagatttttcacctcatTCTTTATAtccagcaccataccagtgtaTGTGAAAACGGTGCATTTCTAAGTTTTGTAGTCAGAAAGATAGAAAAGGTTTTCAGCAATTTCTCCCGGTGATGtaattttctaaaaaaaaaaaaaacgtttcctTCGTAAGAAACCAAAAACCAGTCGTTGCTTAACAAATCAAACCTCGGTACGGATTCTCTCTGTTTTGTTTGTCATCCTGGGACCTGAACTGCGTCATTTAATTACACCTTTCATTTTGACAACTGAATTGATTTACTTTAATTTGACTTGTTTTCTTCATACAGAAAGAACACTCAGGTCTACTGTTAGTAGCTAATCAAATCACACAATGTCTTAGTGCCACAGCACATTGTGGGCATGTGTCTTAAACGTCTTAAACCCTATTAGAGATTCATGTACTTAACCGTTATGGCCAAATGCAGTAGAACTAGCTGTTTATGTAAAGAGCTTTTCTTTTTTCCTGCTTATGTTTTTCAGTGTATGCTGTTTTATGGTACTGTAGATGTAAGTTGCTAAGAAAAACTTGGAGACACTTTTCCCACCACACGCTGAGCAAGCGTGATGATATGTACCTTGTTGTCAGCCCTCTCTTATACAGTAGGAGGACGGACCGGGTATTACCATAACCACATCAATAATGTACATATTTCAATGACTGCGcaattacatgttttatttttctcTTCTGTAAATTAGAGAAATAGAATCGACAAACTGCAATAAAGTTTACATTTTCTTACA

Function

NR:

description
PREDICTED: SITS-binding protein-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564132.2 False 9062 mRNA 0.44 10 47227366 47311705
TU172669 True 1230 lncRNA 0.39 1 47227366 47228595

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-19e1.3 LOC106560684 coding downstream 96849 47033009 ~ 47130517 (-)
tmem86a tmem86a coding downstream 305758 46844180 ~ 46921608 (-)
b4galnt4a b4galnt4 coding downstream 471363 46318557 ~ 46756003 (-)
LOC118940396 LOC106604981 coding downstream 634643 46589886 ~ 46592723 (-)
abtb2b abtb2 coding downstream 938023 46139256 ~ 46289343 (-)
mrpl23 LOC105008177 coding upstream 553107 47864812 ~ 47998457 (-)
phlda2 phla2 coding upstream 963369 48275074 ~ 48277572 (-)
nap1l4a LOC106560703 coding upstream 1007515 48319220 ~ 48384812 (-)
commd9 commd9 coding upstream 1137438 48449143 ~ 48457258 (-)
th th coding upstream 1226125 48537830 ~ 48560832 (-)
G150759 NA non-coding downstream 20407 47206760 ~ 47206959 (-)
G150758 NA non-coding downstream 20980 47206146 ~ 47206386 (-)
G150675 LOC100653436 non-coding downstream 24999 47194893 ~ 47205433 (-)
G150681 NA non-coding downstream 49547 47176737 ~ 47177819 (-)
G150586 spty2d1 non-coding downstream 258290 46967505 ~ 46969076 (-)
G150837 NA non-coding upstream 6860 47318565 ~ 47337705 (-)
G150857 NA non-coding upstream 29768 47341473 ~ 47341693 (-)
G150850 NA non-coding upstream 63759 47375464 ~ 47377167 (-)
G150878 NA non-coding upstream 66633 47378338 ~ 47378627 (-)
G150900 NA non-coding upstream 87676 47399381 ~ 47399597 (-)
G150618 NA other downstream 233701 46964734 ~ 46993665 (-)
G150290 NA other downstream 377750 46846152 ~ 46849616 (-)
LOC110490531 LOC106560723 other downstream 2059267 45134476 ~ 45168260 (-)
G151474 NA other upstream 539080 47850785 ~ 47851348 (-)
G151875 NA other upstream 876253 48187958 ~ 48188278 (-)
G151920 NA other upstream 914594 48226299 ~ 48226944 (-)
G152024 NA other upstream 991606 48303311 ~ 48303663 (-)
G154300 NA other upstream 2789725 50101430 ~ 50107447 (-)
G150771 NA non-coding upstream 7511 47236106 ~ 47236306 (-)
G150779 NA non-coding upstream 15890 47244485 ~ 47244802 (-)
G150780 NA non-coding upstream 16454 47245049 ~ 47245541 (-)
G150783 NA non-coding upstream 21987 47250582 ~ 47250820 (-)
G150789 NA non-coding upstream 28047 47256642 ~ 47256949 (-)

Expression


Co-expression Network