commd9 (commd9)


Basic Information

Item Value
gene id commd9
gene name commd9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48449143 ~ 48457258 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564222.2
TCTCTAATCCCTTTCATGTCGACTCACTACCATGAATGGGAGAAGGCTCCATCGAAGGATGCGGTGCGGCAGCTATGTGCTGACAGTTTCCCTTCTGGAGCCCCTGAGTCATGGCGACTCGCGGAAAGTACAGCAGGGACCCTGTCTGTATCTGCCATCGAGGCAAAGGAGCTTATTGCAGCCCTGCACACCCTTTCTCACCACATCCTGTTCCATAACCTGACAGCGCCCGAGCAGATCCTTGTACTATTCCCCAAGTCATTCCACCCCAGCCTCAAGATCCTCATTACCAAGATTATGCTTGAGCACAGcccCACATGGAGAAATGAGGCTCTGTCTAATCAAATTTCGCTGCCCCATCTAGTGGAGATGGACTGGAGAGTCGACATGAAGACTGCATCTGACTCGGTCAGTCGCATGGCTGTGCCCACCTGCCTGGTGCACATGAAGGTGGAGGACTCCAGCTGTCTAAGGGGCAGTGGCGCTCTCTCATCGGTCACGGTGGAGTTGAGCAAGGAAACTCTGGACACCATGCTGGACGGCCTGGGCCGGATCCGTGACCAATTGTCAGTGGTGGCCGGAAAATGAGACCCCTCACCAGAATGGCCACACCGGAGGCCTTGGGTACATCATTCTTGATACTCTAAAGTGACTTTTACTCATCTCATTTATCTGCACAAATCTGAAAACAGAGAAATCAATTATGGGTGCCCATTTTCTACTAATAAACATAAAAGTCTCAAATGTAAACACTTGATAAAGTGGCTCACACGACGTCAGTGACACTGCCAGGGTGTCAGTGCCGTTTTAAGGAAGGTGGGAAATAAGAGGTAGCAATTTTAGACATGGGCTAAAAGATGGAAAAGAAGAAGAGACTCGTTCCTCTAGTCCCGGGGGGAAGAAACAAACAAGTACACACAATCCCATCATTAGCACTGATCTGGTAGTGCCACTACATTCCTCCTTGTTCTGTCAGTAGAGTCAAGAGGGTCTTTTGAATTCAATGTTTATGTCAATAAATGAAGAGATTAATGCTGAA
>XM_021564226.2
tagtgagtggaattGCCAACCGGATagttcacatttatacatccggtgaaatatctggaACATCTTTCTTGCTGCGATTGCCATCTGTGTCACGTGGCAAGATGGCTGCCATTTCAGATGAATATTTTTCTTCCTTGCAAATTCTTTTAAAGGCTCCATCGAAGGATGCGGTGCGGCAGCTATGTGCTGACAGTTTCCCTTCTGGAGCCCCTGAGTCATGGCGACTCGCGGAAAGTACAGCAGGGACCCTGTCTGTATCTGCCATCGAGGCAAAGGAGCTTATTGCAGCCCTGCACACCCTTTCTCACCACATCCTGTTCCATAACCTGACAGCGCCCGAGCAGATCCTTGTACTATTCCCCAAGTCATTCCACCCCAGCCTCAAGATCCTCATTACCAAGATTATGCTTGAGCACAGcccCACATGGAGAAATGAGGCTCTGTCTAATCAAATTTCGCTGCCCCATCTAGTGGAGATGGACTGGAGAGTCGACATGAAGACTGCATCTGACTCGGTCAGTCGCATGGCTGTGCCCACCTGCCTGGTGCACATGAAGGTGGAGGACTCCAGCTGTCTAAGGGGCAGTGGCGCTCTCTCATCGGTCACGGTGGAGTTGAGCAAGGAAACTCTGGACACCATGCTGGACGGCCTGGGCCGGATCCGTGACCAATTGTCAGTGGTGGCCGGAAAATGAGACCCCTCACCAGAATGGCCACACCGGAGGCCTTGGGTACATCATTCTTGATACTCTAAAGTGACTTTTACTCATCTCATTTATCTGCACAAATCTGAAAACAGAGAAATCAATTATGGGTGCCCATTTTCTACTAATAAACATAAAAGTCTCAAATGTAAACACTTGATAAAGTGGCTCACACGACGTCAGTGACACTGCCAGGGTGTCAGTGCCGTTTTAAGGAAGGTGGGAAATAAGAGGTAGCAATTTTAGACATGGGCTAAAAGATGGAAAAGAAGAAGAGACTCGTTCCTCTAGTCCCGGGGGGAAGAAACAAACAAGTACACACAATCCCATCATTAGCACTGATCTGGTAGTGCCACTACATTCCTCCTTGTTCTGTCAGTAGAGTCAAGAGGGTCTTTTGAATTCAATGTTTATGTCAATAAATGAAGAGATTAATG

Function

symbol description
commd9 Orthologous to human COMMD9 (COMM domain containing 9).

NR:

description
COMM domain-containing protein 9 isoform X2

GO: NA

KEGG:

id description
K22565 COMMD9; COMM domain containing 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564222.2 False 1039 mRNA 0.49 5 48449143 48451100
XM_021564226.2 True 1141 mRNA 0.48 6 48449148 48457258

Neighbor

gene id symbol gene type direction distance location
nap1l4a LOC106560703 coding downstream 64331 48319220 ~ 48384812 (-)
phlda2 phla2 coding downstream 171571 48275074 ~ 48277572 (-)
mrpl23 LOC105008177 coding downstream 450686 47864812 ~ 47998457 (-)
si:ch211-236l14.4 LOC106560706 coding downstream 1137438 47227366 ~ 47311705 (-)
si:dkeyp-19e1.3 LOC106560684 coding downstream 1318626 47033009 ~ 47130517 (-)
th th coding upstream 80572 48537830 ~ 48560832 (-)
ptdss2 ptdss2 coding upstream 204193 48661451 ~ 48697994 (-)
LOC118940428 NA coding upstream 244191 48701449 ~ 48711230 (-)
trnas-gcu NA coding upstream 353094 48810352 ~ 48810433 (-)
trnas-gcu-2 NA coding upstream 354213 48809911 ~ 48812873 (-)
G152038 NA non-coding downstream 135614 48313296 ~ 48313529 (-)
G152026 NA non-coding downstream 143960 48304964 ~ 48305183 (-)
G152017 NA non-coding downstream 150554 48298346 ~ 48298589 (-)
G152002 NA non-coding downstream 177049 48271615 ~ 48272094 (-)
G151936 NA non-coding downstream 213189 48234024 ~ 48235954 (-)
G152371 NA non-coding upstream 6565 48463823 ~ 48507440 (-)
G152375 NA non-coding upstream 14798 48472056 ~ 48476174 (-)
G152395 NA non-coding upstream 52858 48510116 ~ 48512784 (-)
G152399 NA non-coding upstream 60855 48518113 ~ 48518348 (-)
G152403 NA non-coding upstream 65910 48523168 ~ 48523379 (-)
G152024 NA other downstream 145480 48303311 ~ 48303663 (-)
G151920 NA other downstream 222199 48226299 ~ 48226944 (-)
G151875 NA other downstream 260865 48187958 ~ 48188278 (-)
G151474 NA other downstream 597795 47850785 ~ 47851348 (-)
G150675 LOC100653436 other downstream 1243710 47194893 ~ 47205433 (-)
G154300 NA other upstream 1644172 50101430 ~ 50107447 (-)
G154338 NA other upstream 1699428 50156686 ~ 50157825 (-)
G155003 NA other upstream 1958485 50415743 ~ 50452147 (-)
G155072 NA other upstream 2122540 50579798 ~ 50581349 (-)
G155281 LOC106560681 other upstream 2513818 50971076 ~ 50971935 (-)

Expression


Co-expression Network