LOC118940428


Basic Information

Item Value
gene id LOC118940428
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48701449 ~ 48711230 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036982.1
AGAGGGCGGGATCAGAGCTTCAAACTTcaatggggccgaccaatcagctgcttgggggattcaggaagccatttcctgaaatacacacatacatttacacaaacccacaacacagaaactggggaacgtaacaggcACTTTTCAAAGGGAATTGGCTGACAGGTCAGGAATCTCTCAGACAACCTTTATGCCAGACGTGTTAGGAGGTATAATTTAATTGATGCACCTCTACATAAAGTTTCCTTACACGGTGGGTGAACAGGCAAATAAAAAAGTGCAATTTGCAGCAATGTCGGGTTTCCCAAATGTAATTGGTGCTATTGACTGCACTCATGTTGCTATACGGGCACCGAGTGAGAATGAATTTGCTTTCAATAATCGGAAACATTACCATTTCACTAATGTCCAAATCATATGTGATCTGGACATGGTACTGACTAATATAGTGGCTCGGTGGCCTGGGTCAACCCATGACTCATTCATATGGAGCAACAGCAGTGTTGGGTGCAGACTTGAGGCCGTAGCTGTGCGTGTTGGCTGGCTTCTAGGCGACAGTGGATATCCCCTCAAGTGGTGGCTGCTCACCCTTTTCGCCAACCCACAGAGCGCAGAGGAGAGGAACTACAACGTACGCCATTGCCACGTACGCGCTGTTGTGGAGCGGGCTTCTGAAGGGCAGATGGTGCTGCCTCGATTCCTCAGGCAACCAAAAAGAAGGCACTGGCTGTCGTTGACGAACCCTCCCACCCTCTACACCCTCAGTCACGAGAGGCTTTCTTCGGGCCAGTGCTTCAGAACGCCCATGGCCAAGAAGAATGTGTTCAAACATTAATTTGTTCCTTATGCTGTTGGACTACTAAAAAAGTAAAGTAAATTATATTGGTATCTGGACGTATCTAGTGCAGTTGGGACAGTGGTTGTTGTGAgtgaatgtattaatgtcctCTGTTGTTGTGTATGCAACATGATGCACTGACTGGTTTaaatgtgtatgatgtgagaatgtatgtgtatgtgattgTTTTAATGAAGGTGATGCCAAAGAAAAATGGCCTTCCTGGATGGACAATAAAGTTTTATTCAATG
>XR_005036983.1
GGagtgcacacaaaaaaataatttaggataataaatacaaatctgtTCTTGCAAAAGAACCCCTCAAATATGTTGTACAGTTTAATTAGGAATCATATTTATTTGGTTCTGTAATTAAACAATACTTGCATGTTATGAAATTTAATGTGAACAGTAGGACAAATGACATTTAAAGTTTTCAATGCCTCAGTCTGGCAGATACGAGTGCAGTTTCATATATTGTTATCACATGTTCTTTGCGCAGAATGTCAGTGTGATAATGACCCTGTCATGGTCAGTTACAatcaggttaattaccacacctGAAGGTGTTACGCAACTGGGTAGCTTTGACAAGCAAATGGGTGGGTATAAAAAGGCATGCAATTACAAAAATACGTAATGACGTACAATGGCTGCTTTGGCGAATGGAAGAATTCGGAGAGAGCGAATTTTCAGAGACAAGCAAGATTTACTGGCAGATGATGTGCTGCTTATGAGCCGGTTCCAATTACCAAGAGCTGTTCGCTTGGATCTCTGTGCTGTAGTGGGACCAGCTTTACAGAGAAACAACCTCAGAAATCAAGCCGTGCCTGTCCCACTTCAAATCCCGACAACCCTCCGATCTCTGTCAACAGGCACTGTTACATACACCTCTTAGAGGGAATGCAACGTCCTGCTACACTAAACTCCctgtggagtgaaagagGCGACAGTGGATATCCCCTCAAGTGGTGGCTGCTCACCCTTTTCGCCAACCCACAGAGCGCAGAGGAGAGGAACTACAACGTACGCCATTGCCACGTACGCGCTGTTGTGGAGCGGGCTTCTGAAGGGCAGATGGTGCTGCCTCGATTCCTCAGGCAACCAAAAAGAAGGCACTGGCTGTCGTTGACGAACCCTCCCACCCTCTACACCCTCAGTCACGAGAGGCTTTCTTCGGGCCAGTGCTTCAGAACGCCCATGGCCAAGAAGAATGTGTTCAAACATTAATTTGTTCCTTATGCTGTTGGACTACTAAAAAAGTAAAGTAAATTATATTGGTATCTGGACGTATCTAGTGCAGTTGGGACAGTGGTTGTTGTGAgtgaatgtattaatgtcctCTGTTGTTGTGTATGCAACATGATGCACTGACTGGTTTaaatgtgtatgatgtgagaatgtatgtgtatgtgattgTTTTAATGAAGGTGATGCCAAAGAAAAATGGCCTTCCTGGATGGACAATAAAGTTTTATTCAATG

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: putative nuclease HARBI1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036982.1 False 1086 mRNA 0.46 3 48701449 48710051
XR_005036983.1 True 1226 mRNA 0.43 3 48701449 48711230

Neighbor

gene id symbol gene type direction distance location
ptdss2 ptdss2 coding downstream 3455 48661451 ~ 48697994 (-)
th th coding downstream 140617 48537830 ~ 48560832 (-)
commd9 commd9 coding downstream 244191 48449143 ~ 48457258 (-)
nap1l4a LOC106560703 coding downstream 316637 48319220 ~ 48384812 (-)
phlda2 phla2 coding downstream 423877 48275074 ~ 48277572 (-)
trnas-gcu NA coding upstream 99122 48810352 ~ 48810433 (-)
trnas-gcu-2 NA coding upstream 100241 48809911 ~ 48812873 (-)
trnas-gcu-3 NA coding upstream 101359 48812589 ~ 48812670 (-)
ifitm5 LOC106560727 coding upstream 364863 49076093 ~ 49078840 (-)
cat cata coding upstream 391756 49102986 ~ 49114529 (-)
G152356 NA non-coding downstream 40411 48659223 ~ 48661038 (-)
G152355 NA non-coding downstream 42350 48658041 ~ 48659099 (-)
G152354 NA non-coding downstream 43906 48656113 ~ 48657543 (-)
G152486 NA non-coding downstream 48384 48652737 ~ 48653065 (-)
G152449 NA non-coding downstream 103941 48597282 ~ 48597508 (-)
G152542 NA non-coding upstream 47553 48758783 ~ 48759005 (-)
G152594 NA non-coding upstream 80522 48791752 ~ 48792081 (-)
G152596 NA non-coding upstream 82709 48793939 ~ 48794204 (-)
G152605 NA non-coding upstream 86311 48797541 ~ 48797808 (-)
G152618 NA non-coding upstream 94722 48805952 ~ 48806203 (-)
G152024 NA other downstream 397786 48303311 ~ 48303663 (-)
G151920 NA other downstream 474505 48226299 ~ 48226944 (-)
G151875 NA other downstream 513171 48187958 ~ 48188278 (-)
G151474 NA other downstream 850101 47850785 ~ 47851348 (-)
G150675 LOC100653436 other downstream 1496016 47194893 ~ 47205433 (-)
G154300 NA other upstream 1390200 50101430 ~ 50107447 (-)
G154338 NA other upstream 1445456 50156686 ~ 50157825 (-)
G155003 NA other upstream 1704513 50415743 ~ 50452147 (-)
G155072 NA other upstream 1868568 50579798 ~ 50581349 (-)
G155281 LOC106560681 other upstream 2259846 50971076 ~ 50971935 (-)

Expression


Co-expression Network