syt12 (syt12)


Basic Information

Item Value
gene id syt12
gene name syt12
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 49114742 ~ 49155261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564325.2
GGTCAAGTGCTGGAAGTTGCATTGCAGGGGTGTGACTAGGCTACCTCTGCAGTCGAGGGGGGAACGTTCTCATAGAAATGCTTCTATAGCGACTGTCTCCTCAGGACCTCGCATCGCATGCATCTCGAGTGGGAAGGGCCCCTCGTTGAATGATTTCAATACAATTAGTCGAGCGGATGCGCTGAACAGGGGTGAATCTCCATCACGTTTTCCCCCGGAAAGACAGGCACCTGTGCGTTGCGATGGAGAGCGGCGAGTAAACTGAAGGGAGAGCGGTGGAGTTGTACCCCCCTTCCCCCTTGCACCAAATTAAAACTCCAAGTGGTCCGAGCTCCCCccgaatgggaggtaggggtgtTCGTGGCTGGGTTCCTCCTGTTGTTGGCGGTGGCAGGAGTCAACCTCTGGAAGTTATGGAAGTCTGGAACCTTTCCTGCACCCTCACCCTTCCCAAACTTTGACTACCGCTATCTACAAGAAAAATATGGCAACTCCTTCTCAGAAGCGCGGCAAAAGAGAGTGGTCGCCAACAACCACAGACGGGCCTCCGCCTCCACCAACCTGAGTCGTAAGCCCAGCCTGCAGCTGGTGGACACCCCGGATGGGCTGCGGGACCTGGGACACCTGGAGCTGATGAGCCGGGACCTGATGGACCCTGCCGGTGGGGTCGTCCCCTTCAACCGCTCTATGTCCACCGACTCTCTCAGCTCTATTTCCTCCATCGGCAACAATTTTGGGCACGACTACACAGTGGGGCAGCTGGAGGTGACCCTGGAGTATGAGGCCCGACCAGGGCCTGGGCCGGGGGTGCTCCACATCGCCCTGCACCAGGGCAAGGACCTGCTGGAGAAGGAGGAAGGGGACTTCCCCGGCTGCTTTATCCGGGTCACCTTGGTTCCTGAAGAACTCAACGTGGGCATCACCAGgGTCCAGAGGAATGCTTTCACAGTCGTGTTCGACGAGCGTTTCTCCATAGCCCTGGATCCATCTTGTCTGGAGGAGAACAGCCTGCGCTTCGCTGCATTCGGCATCGACGCTGAGGAGAGGAACATCAGCGCCGGCCTAGCAGAGCTCAAGCTGTCTGACCTGGACCTTTCTATCAGACCCTTCAATGCCTGGCTCTACCTGCAAGATGTTAACAAGGCCGTGGATGCAGTTGGGGAGATTCTGCTGTCTCTCAGCTACTTGCCCACCGCTGAGCGCCTTACAGTGGTGGTGGCCAAAGCAAAGAACCTTGTGTGGACCAATGACAAAACCACAGCAGATCCCTTTGTCAAAGTGTACCTTCTGCAAGATGGTAAGAAAATCAGTAAGAAGAAGACCTCCATGAAAAGAGACGACACCAACCCCATCTTCAACGAAGCCATGATATTCTCTGTGCCTGCTGTCGTCTTACAGGAACTCTCCCTGAGGATCACAGTGGCGGAGGGCACCGATGACGGCAGGGGCGAGAACGTGGGTCACGTGATTATCGGACCCGAGGCGAGTGGCATGGGCATCACCCACTGGAACCAGATGTTGGCAACACTGAGGAAACCTGTGTCCATGTGGCACCCTCTGCGGAGGACCTAgtacccctccatctccctctgtacCATACCTCCGGTcaccagggttgggctcaattccatttcaactcaCTCCATTCAGGGGATACATTGAGATTTCAGTTTGAGAATTGAAAAAGTGCCATTTATTTTCAAGGAGGATTTTCCACTTCCTAAATTGAACGAATTGGATTGGAGTTGATCCCGACCCTGCCGGTCACTCCTCTTTGCATGGTGCCTACTGTAGTACTATTTTACTGTCCTCCAGATAGGGAGAATAAAAAAGGAAGGGGTAAAATAGCTTCTTTTTTCAGGAAACTAGTCATTTGTCTTTTGAAACCAGTCTTACTCTGCACCTAGTGGTATGGTAGACTAATTGGCAGGTGGCGTGGTAAGCTTTATCAGATTTGCTTGTGATCATTTGTAAAATGTGAGAGTGACAAACTTTTCCTAGTATGGTTTTTGGTATGTATCATATCTTCTTGTGCTTTTTAAAATCCAGGTTCTCAAATCCAGGTGATATCAATTGTAATTTGTAGCAATTGTAACAGGGTGCCCAAATCTGACCTAACAGGTATATAGGTACTATAACTTGTTGCATTGTACGATTTGTATCATAATAAATGCAATACAAGTTGCAATGTCATTCTGATAAAACAGAGTTAGGAATGTAAATAATGTACAACTGCTTTGTTTTAGTTGTATTCATTCAAATAtgaatatgtattattatggtaTTATGTTGATAATTAGTGTGCACTTTCATTGCATATTCATAATCATCAAAAAGCCAATACTAGAGTTACACAAACACATTATCAGGTGAATATTAATTCAGTAGATCAATTTACTATTTACTATGTATTAAAAGGTATGTCACCCAATGCATTCCACAATGAAGCCATATCTCATGCTTATGTAGCCCTTATAGACGTGTAATAATTGTTTGTGGATGCATTTAGTGGTCAGTTTTACCCATTTGATCCTCTATCGGCTTTAAACTGCTAAACATAACCTTCTGGACTCTCTTTAGGAGTAAGAGCACCATATTATCTAGGTGAATGCATAAAATACTAAAATGGGCTTTATCGATGTTGACCTCGACAACCATTACTGTTGACTTGGATGTAACTGATTATTTTACTTGGTTGCATTGTGAGGGGGGTGCAATGAAGACCTTTATTTGCTATCTGTAACAATTTGGCAATAATGTTTGTACAACAGAATGTGAATTAACAAGTGACCTCCCCTTGCATTGTATAAACAGGTCAGATCGCCCTTATTACCTGGCAAATGTGATTTTTATTAATTCAGTGTAAAACTAACCATGCGTTTAAAGGCACAAAATACAGTATTGTCACTCAATAACCTCAACAAAAATTCTAACAAGACGCTTGTTAAATGCTGCATCTGGGCAACCATTCCTTACCACTCCTTTGCATTCCACAATCAACAATGTGATGCAATATTTCCTACTGTGCCAAATTCATTATTGAAGCAATATTTTCATTTAGCCTACAGTGAGCATTTGCATTTTGTGATCAATGCCATGCATGCACTTGTTTAGCACTAGTTACGGTTGTGCCACCAAATATGTGTATTGTGTAAACATTGTTTCAAATATAAGAGTTGCAACAAATG
>XM_021564319.2
CTGGTCAAGTGCTGGAAGTTGCATTGCAGGGGTGTGACTAGGCTACCTCTGCAGTCGAGGGGGGAACGTTCTCATAGAAATGCTTCTATAGCGACTGTCTCCTCAGGACCTCGCATCGCATGCATCTCGAGTGGGAAGGGCCCCTCGTTGAATGATTTCAATACAATTAGTCGAGCGGATGCGCTGAACAGGGGTGAATCTCCATCACGTTTTCCCCCGGAAAGACAGGCACCTGTGCGTTGCGATGGAGAGCGGCGAGTAAACTGAAGGGAGAGCGGTGGAGTTGTACCCCCCTTCCCCCTTGCACCAAATTAAAACTCCAAGGCTGGTGGCTGTACAATGTCCTCAGCACAGGGCAAGGATATATCGGACTACCATATCAgcgTGGTCCGAGCTCCCCccgaatgggaggtaggggtgtTCGTGGCTGGGTTCCTCCTGTTGTTGGCGGTGGCAGGAGTCAACCTCTGGAAGTTATGGAAGTCTGGAACCTTTCCTGCACCCTCACCCTTCCCAAACTTTGACTACCGCTATCTACAAGAAAAATATGGCAACTCCTTCTCAGAAGCGCGGCAAAAGAGAGTGGTCGCCAACAACCACAGACGGGCCTCCGCCTCCACCAACCTGAGTCGTAAGCCCAGCCTGCAGCTGGTGGACACCCCGGATGGGCTGCGGGACCTGGGACACCTGGAGCTGATGAGCCGGGACCTGATGGACCCTGCCGGTGGGGTCGTCCCCTTCAACCGCTCTATGTCCACCGACTCTCTCAGCTCTATTTCCTCCATCGGCAACAATTTTGGGCACGACTACACAGTGGGGCAGCTGGAGGTGACCCTGGAGTATGAGGCCCGACCAGGGCCTGGGCCGGGGGTGCTCCACATCGCCCTGCACCAGGGCAAGGACCTGCTGGAGAAGGAGGAAGGGGACTTCCCCGGCTGCTTTATCCGGGTCACCTTGGTTCCTGAAGAACTCAACGTGGGCATCACCAGgGTCCAGAGGAATGCTTTCACAGTCGTGTTCGACGAGCGTTTCTCCATAGCCCTGGATCCATCTTGTCTGGAGGAGAACAGCCTGCGCTTCGCTGCATTCGGCATCGACGCTGAGGAGAGGAACATCAGCGCCGGCCTAGCAGAGCTCAAGCTGTCTGACCTGGACCTTTCTATCAGACCCTTCAATGCCTGGCTCTACCTGCAAGATGTTAACAAGGCCGTGGATGCAGTTGGGGAGATTCTGCTGTCTCTCAGCTACTTGCCCACCGCTGAGCGCCTTACAGTGGTGGTGGCCAAAGCAAAGAACCTTGTGTGGACCAATGACAAAACCACAGCAGATCCCTTTGTCAAAGTGTACCTTCTGCAAGATGGTAAGAAAATCAGTAAGAAGAAGACCTCCATGAAAAGAGACGACACCAACCCCATCTTCAACGAAGCCATGATATTCTCTGTGCCTGCTGTCGTCTTACAGGAACTCTCCCTGAGGATCACAGTGGCGGAGGGCACCGATGACGGCAGGGGCGAGAACGTGGGTCACGTGATTATCGGACCCGAGGCGAGTGGCATGGGCATCACCCACTGGAACCAGATGTTGGCAACACTGAGGAAACCTGTGTCCATGTGGCACCCTCTGCGGAGGACCTAgtacccctccatctccctctgtacCATACCTCCGGTcaccagggttgggctcaattccatttcaactcaCTCCATTCAGGGGATACATTGAGATTTCAGTTTGAGAATTGAAAAAGTGCCATTTATTTTCAAGGAGGATTTTCCACTTCCTAAATTGAACGAATTGGATTGGAGTTGATCCCGACCCTGCCGGTCACTCCTCTTTGCATGGTGCCTACTGTAGTACTATTTTACTGTCCTCCAGATAGGGAGAATAAAAAAGGAAGGGGTAAAATAGCTTCTTTTTTCAGGAAACTAGTCATTTGTCTTTTGAAACCAGTCTTACTCTGCACCTAGTGGTATGGTAGACTAATTGGCAGGTGGCGTGGTAAGCTTTATCAGATTTGCTTGTGATCATTTGTAAAATGTGAGAGTGACAAACTTTTCCTAGTATGGTTTTTGGTATGTATCATATCTTCTTGTGCTTTTTAAAATCCAGGTTCTCAAATCCAGGTGATATCAATTGTAATTTGTAGCAATTGTAACAGGGTGCCCAAATCTGACCTAACAGGTATATAGGTACTATAACTTGTTGCATTGTACGATTTGTATCATAATAAATGCAATACAAGTTGCAATGTCATTCTGATAAAACAGAGTTAGGAATGTAAATAATGTACAACTGCTTTGTTTTAGTTGTATTCATTCAAATAtgaatatgtattattatggtaTTATGTTGATAATTAGTGTGCACTTTCATTGCATATTCATAATCATCAAAAAGCCAATACTAGAGTTACACAAACACATTATCAGGTGAATATTAATTCAGTAGATCAATTTACTATTTACTATGTATTAAAAGGTATGTCACCCAATGCATTCCACAATGAAGCCATATCTCATGCTTATGTAGCCCTTATAGACGTGTAATAATTGTTTGTGGATGCATTTAGTGGTCAGTTTTACCCATTTGATCCTCTATCGGCTTTAAACTGCTAAACATAACCTTCTGGACTCTCTTTAGGAGTAAGAGCACCATATTATCTAGGTGAATGCATAAAATACTAAAATGGGCTTTATCGATGTTGACCTCGACAACCATTACTGTTGACTTGGATGTAACTGATTATTTTACTTGGTTGCATTGTGAGGGGGGTGCAATGAAGACCTTTATTTGCTATCTGTAACAATTTGGCAATAATGTTTGTACAACAGAATGTGAATTAACAAGTGACCTCCCCTTGCATTGTATAAACAGGTCAGATCGCCCTTATTACCTGGCAAATGTGATTTTTATTAATTCAGTGTAAAACTAACCATGCGTTTAAAGGCACAAAATACAGTATTGTCACTCAATAACCTCAACAAAAATTCTAACAAGACGCTTGTTAAATGCTGCATCTGGGCAACCATTCCTTACCACTCCTTTGCATTCCACAATCAACAATGTGATGCAATATTTCCTACTGTGCCAAATTCATTATTGAAGCAATATTTTCATTTAGCCTACAGTGAGCATTTGCATTTTGTGATCAATGCCATGCATGCACTTGTTTAGCACTAGTTACGGTTGTGCCACCAAATATGTGTATTGTGTAAACATTGTTTCAAATATAAGAGTTGCAACAAATG

Function

symbol description
syt12 Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to act upstream of or within long-term synaptic potentiation and regulation of neurotransmitter secretion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYT12 (synaptotagmin 12).

NR:

description
synaptotagmin-12 isoform X1

GO: NA

KEGG:

id description
K19912 SYT12; synaptotagmin-12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564325.2 False 3188 mRNA 0.46 7 49114742 49155259
XM_021564319.2 True 3251 mRNA 0.46 8 49114742 49155261

Neighbor

gene id symbol gene type direction distance location
cat cata coding downstream 213 49102986 ~ 49114529 (-)
ifitm5 LOC106560727 coding downstream 35902 49076093 ~ 49078840 (-)
trnas-gcu-3 NA coding downstream 302072 48812589 ~ 48812670 (-)
trnas-gcu-2 NA coding downstream 303190 48809911 ~ 48812873 (-)
trnas-gcu NA coding downstream 304309 48810352 ~ 48810433 (-)
peak1 peak1 coding upstream 11408 49166669 ~ 49427283 (-)
hmg20a hmg20a coding upstream 296427 49451688 ~ 49475371 (-)
LOC118936760 NA coding upstream 583581 49738842 ~ 49739246 (-)
LOC110490968 LOC105006464 coding upstream 646768 49801952 ~ 49837047 (-)
LOC110490984 LOC106560693 coding upstream 807635 49962896 ~ 50037892 (-)
G152895 NA non-coding downstream 71487 49043026 ~ 49043255 (-)
G152833 NA non-coding downstream 135116 48979391 ~ 48979626 (-)
G152618 NA non-coding downstream 308539 48805952 ~ 48806203 (-)
G152605 NA non-coding downstream 316934 48797541 ~ 48797808 (-)
G153535 NA non-coding upstream 56341 49211602 ~ 49211822 (-)
G153538 NA non-coding upstream 64046 49219307 ~ 49219528 (-)
G153613 NA non-coding upstream 227544 49382805 ~ 49448916 (-)
G153637 NA non-coding upstream 278252 49433513 ~ 49433936 (-)
G152024 NA other downstream 811079 48303311 ~ 48303663 (-)
G151920 NA other downstream 887798 48226299 ~ 48226944 (-)
G151875 NA other downstream 926464 48187958 ~ 48188278 (-)
G151474 NA other downstream 1263394 47850785 ~ 47851348 (-)
G150675 LOC100653436 other downstream 1909309 47194893 ~ 47205433 (-)
G154300 NA other upstream 946169 50101430 ~ 50107447 (-)
G154338 NA other upstream 1001425 50156686 ~ 50157825 (-)
G155003 NA other upstream 1260482 50415743 ~ 50452147 (-)
G155072 NA other upstream 1424537 50579798 ~ 50581349 (-)
G155281 LOC106560681 other upstream 1815815 50971076 ~ 50971935 (-)

Expression


Co-expression Network