hmg20a (hmg20a)


Basic Information

Item Value
gene id hmg20a
gene name hmg20a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 49451688 ~ 49475371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564353.2
GACCACAATGCAAGCGACACTCGGATGAATTTAGTAAATCGGTTGCCGGTAGTGACGTTGTTCCACTTCCAGAGAGGACTTCTGCATTGTTTTGATTCTGAGATCCCCATCGCCAGCTAATTTCTGGATTTTTAACCaaaaagaataagttacagGCTCGTTTCCTGGAGGCAGAGGCGATGGAAGAGCAGACAGGCTCACCTGGTAACACAGACAACAGCAGCCAGAGAAATGAAGAGGAGAAGCCCAGGCGCAGCAGCTGGACCAAGGGCCGTAAGAGGAAGAAGCCAGTGAAGGACAGCAACGCCCCCAAGGCACCGCTAACGGGCTATGTGCGCTTCATGAACGACCGGCGTGAGCAGCTGAGGGCCGAGCGGCCTGACGTGCCCTTCCCAGAGATCACCAGGATGCTGGGCAATGAGTGGAGCAAGCTGCCGCCGGAAGACAAGCAGCGCTACCTGGACGAGGCGGAGAGGGACAAGGAGCGCTACATGCGTGACCTGGAGAAGTACCAGAAGACGGAGGCCTACAAGCACTTCACCCGGAAGGTGCAGGAGAAACAGAAGGTCAAGAGGCACCGGGGAGATGGCGGGCACCAGGTAGCCAACGAATCTCTTCACGAGAAGGACACAGAAGGCAAGGAAAGGTCTGTGTTCGACattcccatcttcacagaggagtTTCTCAACCACAGCAAAGCACGGGAGGCGGAGATGCGTCAGCTGCGCAAGACCAACATGGAGTATGAGGAACGCAACGCGGCACTGCAGAAGCACGTGGAGAGCATGCGCGGCGCCGTGGAGCGCCTGGATGGCGACGTGAGGCAGGAGAGGGGACGCAACGGGCTGCTCCAGCAGCATCTGGAGACCCTGCGCCAGGCCCTGACCAGCAGCTTCTCCTCTGTGGCCCTTCCtgTTAGTGGGGAGACCCCCACCCTGGACACCATCGACTCCTACATGAAAAAGCTCCATGGTATCATCCTGAGTAACCCGCAGGAGCACGACAACCTCATCGGCACCGTAAGAGAGGTGGTCAACCGGCTGGACAGGTAATTGGACTCAGCTGGACTATTTGACTGTTGTGGCCACAGGGATTGTGAGAATCCAAACCTCCTCCTACCACTTCATTGTCTGGTCCAGTTTAGGATTGCCACTGAGACGTTGATTTTAAAACACCTTTTATTAACTTTAGTGAAGTGAAAATGTGTTggaaatatttgtttttgtttttttatctgtTGACGCTACCAGTGTAGTTAATCGTTTTATAGAAAATGCCGTCCTGGAGATGTCAGTTCAAAAATGACTTTGTACTGTAAGATTCCAAACTTCATGTGTCATTCAAGCCCCATTCCAAGCATAAATAACTTCTCTGACACTGTCAACGTAATGATGTGCATATAGAAGTATTTGGTTGACATTTCAATTCACTTAAGCCTGTATGTGTACTGTtctttttatttgtcaaatattTTTTCATGTCAAGATTTGAGTCTCTTCAAACGTTAGCTGATTTGAGAAATGTCACATTGTGTTTGTGTTGCATCACACATAAGCAGGGGTGGTTTGTATTCTATAGCAAAAGCTTTTGTTTAAAAAATTCTGTGCCAGTCCCAATTTCTTTTGATAGTTGTGGGAAAAGTACTCGTTTgtcttcaataaaatgcatttacAGAA
>XM_036949947.1
GACCACAATGCAAGCGACACTCGGATGAATTTAGTAAATCGGTTGCCGGTAGTGACGTTGTTCCACTTCCAGAGAGGACTTCTGCATTGTTTTGATTCTGAGATCCCCATCGCCAGCTAATTTCTGGATTTTTAACCaaaaagaataagttacagGCTCGTTTCCTGGAGGCAGAGGCGATGGAAGAGCAGACAGGCTCACCTGGTAACACAGACAACAGCAGCCAGAGAAATGAAGAGGAGAAGCCCAGGCGCAGCAGCTGGACCAAGGGCCGTAAGAGGAAGAAGCCAGTGAAGGACAGCAACGCCCCCAAGGCACCGCTAACGGGCTATGTGCGCTTCATGAACGACCGGCGTGAGCAGCTGAGGGCCGAGCGGCCTGACGTGCCCTTCCCAGAGATCACCAGGATGCTGGGCAATGAGTGGAGCAAGCTGCCGCCGGAAGACAAGCAGCGCTACCTGGACGAGGCGGAGAGGGACAAGGAGCGCTACATGCGTGACCTGGAGAAGTACCAGAAGACGGAGGCCTACAAGCACTTCACCCGGAAGGTGCAGGAGAAACAGAAGGTCAAGAGGCACCGGGGAGATGGCGGGCACCAGGTAGCCAACGAATCTCTTCACGAGGACACAGAAGGCAAGGAAAGGTCTGTGTTCGACattcccatcttcacagaggagtTTCTCAACCACAGCAAAGCACGGGAGGCGGAGATGCGTCAGCTGCGCAAGACCAACATGGAGTATGAGGAACGCAACGCGGCACTGCAGAAGCACGTGGAGAGCATGCGCGGCGCCGTGGAGCGCCTGGATGGCGACGTGAGGCAGGAGAGGGGACGCAACGGGCTGCTCCAGCAGCATCTGGAGACCCTGCGCCAGGCCCTGACCAGCAGCTTCTCCTCTGTGGCCCTTCCtgTTAGTGGGGAGACCCCCACCCTGGACACCATCGACTCCTACATGAAAAAGCTCCATGGTATCATCCTGAGTAACCCGCAGGAGCACGACAACCTCATCGGCACCGTAAGAGAGGTGGTCAACCGGCTGGACAGGTAATTGGACTCAGCTGGACTATTTGACTGTTGTGGCCACAGGGATTGTGAGAATCCAAACCTCCTCCTACCACTTCATTGTCTGGTCCAGTTTAGGATTGCCACTGAGACGTTGATTTTAAAACACCTTTTATTAACTTTAGTGAAGTGAAAATGTGTTggaaatatttgtttttgtttttttatctgtTGACGCTACCAGTGTAGTTAATCGTTTTATAGAAAATGCCGTCCTGGAGATGTCAGTTCAAAAATGACTTTGTACTGTAAGATTCCAAACTTCATGTGTCATTCAAGCCCCATTCCAAGCATAAATAACTTCTCTGACACTGTCAACGTAATGATGTGCATATAGAAGTATTTGGTTGACATTTCAATTCACTTAAGCCTGTATGTGTACTGTtctttttatttgtcaaatattTTTTCATGTCAAGATTTGAGTCTCTTCAAACGTTAGCTGATTTGAGAAATGTCACATTGTGTTTGTGTTGCATCACACATAAGCAGGGGTGGTTTGTATTCTATAGCAAAAGCTTTTGTTTAAAAAATTCTGTGCCAGTCCCAATTTCTTTTGATAGTTGTGGGAAAAGTACTCGTTTgtcttcaataaaatgcatttacAGAA
>XM_021564359.2
GACCACAATGCAAGCGACACTCGGATGAATTTAGTAAATCGGTTGCCGGTAGTGACGTTGTTCCACTTCCAGAGAGGACTTCTGCATTGTTTTGATTCTGAGATCCCCATCGCCAGCTAATTTCTGGATTTTTAACCaaaaagaataagttacagGCTCGTTTCCTGGAGGCAGAGGCGATGGAAGAGCAGACAGGCTCACCTGGTAACACAGACAACAGCAGCCAGAGAAATGAAGAGGAGAAGCCCAGGCGCAGCAGCTGGACCAAGGGCCGTAAGAGGAAGAAGCCAGTGAAGGACAGCAACGCCCCCAAGGCACCGCTAACGGGCTATGTGCGCTTCATGAACGACCGGCGTGAGCAGCTGAGGGCCGAGCGGCCTGACGTGCCCTTCCCAGAGATCACCAGGATGCTGGGCAATGAGTGGAGCAAGCTGCCGCCGGAAGACAAGCAGCGCTACCTGGACGAGGCGGAGAGGGACAAGGAGCGCTACATGCGTGACCTGGAGAAGTACCAGAAGACGGAGGCCTACAAGCACTTCACCCGGAAGGTGCAGGAGAAACAGAAGGTCAAGAGGCACCGGGGAGATGGCGGGCACCAGGTAGCCAACGAATCTCTTCACGAGAAGGACACAGAAGGCAAGGAAAGGTCTGTGTTCGACattcccatcttcacagaggagtTTCTCAACCACAGCAAAGCACGGGAGGCGGAGATGCGTCAGCTGCGCAAGACCAACATGGAGTATGAGGAACGCAACGCGGCACTGCAGAAGCACGTGGAGAGCATGCGCGGCGCCGTGGAGCGCCTGGATGGCGACGTGAGGCAGGAGAGGGGACGCAACGGGCTGCTCCAGCAGCATCTGGAGACCCTGCGCCAGGCCCTGACCAGCAGCTTCTCCTCTGTGGCCCTTCCtgTTAGTGGGGAGACCCCCACCCTGGACACCATCGACTCCTACATGAAAAAGCTCCATGGTATCATCCTGAGTAACCCGCAGGAGCACGACAACCTCATCGGCACCGTAAGAGAGGTGGTCAACCGGCTGGACAGGTAA

Function

symbol description
hmg20a Predicted to enable DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human HMG20A (high mobility group 20A).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24660 HMG20A; high mobility group protein 20A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564353.2 False 1676 mRNA 0.49 9 49451688 49475371
XM_036949947.1 False 1673 mRNA 0.49 9 49451688 49475371
XM_021564359.2 True 1052 mRNA 0.57 8 49453802 49475371

Neighbor

gene id symbol gene type direction distance location
peak1 peak1 coding downstream 24405 49166669 ~ 49427283 (-)
syt12 syt12 coding downstream 296427 49114742 ~ 49155261 (-)
cat cata coding downstream 337159 49102986 ~ 49114529 (-)
ifitm5 LOC106560727 coding downstream 372848 49076093 ~ 49078840 (-)
trnas-gcu-3 NA coding downstream 639018 48812589 ~ 48812670 (-)
LOC118936760 NA coding upstream 263471 49738842 ~ 49739246 (-)
LOC110490968 LOC105006464 coding upstream 326658 49801952 ~ 49837047 (-)
LOC110490984 LOC106560693 coding upstream 487525 49962896 ~ 50037892 (-)
plscr3a LOC106560726 coding upstream 649190 50124561 ~ 50127403 (-)
LOC118937274 NA coding upstream 654144 50129515 ~ 50131269 (-)
G153613 NA non-coding downstream 2772 49382805 ~ 49448916 (-)
G153637 NA non-coding downstream 17752 49433513 ~ 49433936 (-)
G153538 NA non-coding downstream 232160 49219307 ~ 49219528 (-)
G153535 NA non-coding downstream 239866 49211602 ~ 49211822 (-)
G153716 NA non-coding upstream 70838 49546209 ~ 49546506 (-)
G153719 NA non-coding upstream 75535 49550906 ~ 49551307 (-)
G153728 NA non-coding upstream 85820 49561191 ~ 49561418 (-)
G153729 NA non-coding upstream 86124 49561495 ~ 49561858 (-)
G153732 NA non-coding upstream 91460 49566831 ~ 49567042 (-)
G152024 NA other downstream 1148025 48303311 ~ 48303663 (-)
G151920 NA other downstream 1224744 48226299 ~ 48226944 (-)
G151875 NA other downstream 1263410 48187958 ~ 48188278 (-)
G151474 NA other downstream 1600340 47850785 ~ 47851348 (-)
G150675 LOC100653436 other downstream 2246255 47194893 ~ 47205433 (-)
G154300 NA other upstream 626059 50101430 ~ 50107447 (-)
G154338 NA other upstream 681315 50156686 ~ 50157825 (-)
G155003 NA other upstream 940372 50415743 ~ 50452147 (-)
G155072 NA other upstream 1104427 50579798 ~ 50581349 (-)
G155281 LOC106560681 other upstream 1495705 50971076 ~ 50971935 (-)

Expression


Co-expression Network