LOC110490948 (LOC106560694)


Basic Information

Item Value
gene id LOC110490948
gene name LOC106560694
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 49749113 ~ 49767125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564368.2
GTTGCGTCACAGTTTCGACGGAATACCTATCATACTTTTCTACAGGAGCAGTCGGTCGGTGCGGAAGGGCGTAGGGTTCTTGTTCGTCGAAAGAATATATTTCAAACCGAGTGGGCCAACGTGTCAACAATTACTGAATTGCACTTTGATTGCTGAAATAATCGAATCGTTTTTTTATTACCGAAATCGGACACATCGCTGGCTTTTAAAACAAAGGCTTCAGGTGTTGGGGCCGACATGTTTGTCAGCGGCTTGGTTTCGGTGTTACTATTCTTTCATGCAACAGGTGTAGAGGCCTTCATGGTTACAACCAAAAATCCAAACGTGAGGGCTAAAGAGAATGAGGGGGCTGATCTTTACTGTACTCCCTCGGCTGACTTTGGTGCAGATGCCAGAGTTGAGTGGAAGTTTAGGGACATGAAGGGTTCTACGACCTATGTCATTTTCGATGGGAAACCCACCAcactttATGAGGGCCGTGTCACCAAGTTTGATGGGATGCTGAGGTTCAGCAAGGTGTTGCGCAAAGATAACGGGCAGTATCAATGTGAGGTGTCTAACAAACAGTATGTTGGGGATGTCAACGTGAATCTCACTGTTTTAGTACCTCCATCCGTGCCCATGTGTAGGATCCCTACCTCTGTGACGACGGGGCATCGCGTGCTACTGTCCTGTCATGATGCAGAGGGGTCTCCTTCCCCCACCTACAAGTGGTATAAGGACAAGACCCCTCTTCCTGAGAACCCCAGCCAGTTCCCTGCCTTCAAGAACTACACCTACAAGATCAATCCTCTCAGTGGCAACCTGGAGTTTCCCTCTGCTTTGGTGATAGATACAGGAGACTACAGCTGTGAAGCTATGAACGATGCCGGCCCTGTTCAACGCTGTCAAGCTGTGAGGATGGAAGTCCgcaacATCAACACTGGAGGTATTGTTGCTGGGGTGATCGTGGCTCTCCTGGCCCTGGCCCTGCTGTGCTTCGGACTGTGGTACGCCCACCGCAAAGGATACATGCCCAAAAAGAGTGAAAGCAAACCCAAACCCTCAGTGGTCTACCAGCCAACATCGGAGTCCGGCGATGAAGAAGATGGGGAATTCAGACAGAAGTCGTCTTTCGTGGTATAGCCAGGGCGTGCAACACATGTCCCGGATATACCCAGGAGTCTACAGCAACTAGTGACTATGGGTGCGTCCCAATAACATCTCccctttctcctgaagtgtgctgTCGTTCACTCCTTCCTACACATCTCAAAGCATTGGGTTGTTGGAGGCATGGGTTAGTGGGTGTTTCCACCGTATTTCTTATACCAGTCATTTTCTTTCAAATCAgcgaagggaagtgaacaagtgcacactttgggccTAGAAGAGATAATTGGGACAAAGCCTATATATGACAATACCACTGCCCCTTATACCTGCTCACTGTGGATAGGTGTGAATTGGTGTGGTTGgatttttaacatttttattccATATGTTTCTAaaaactacatacatttttgaatatttcTCTAACTGGCAGTTACCTACAACTCTACTGTTTTGTGGTGACTGTATAGATCTGAAAAAATACTTCCACTTATACTTCATATTTTTCAAGTGCCTCCGTTCTGTGAAAGAAATCTCGCATTCAAGGAAAtgtaaagggggaaaaaaactggAAATGAATTTATGAAATCTTAAA

Function

NR:

description
junctional adhesion molecule A-like isoform X1

GO: NA

KEGG:

id description
K06089 F11R, JAM1, CD321; junctional adhesion molecule 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564368.2 True 1690 mRNA 0.46 10 49749113 49767125

Neighbor

gene id symbol gene type direction distance location
cdkn1cb LOC106560698 coding upstream 1010562 48736519 ~ 48738551 (+)
prr5l prr5l coding upstream 1247233 48481528 ~ 48501880 (+)
fcsk fuk coding upstream 1301326 48394983 ~ 48447787 (+)
LOC118940424 NA coding upstream 1332055 48412707 ~ 48417058 (+)
osbpl5 LOC106560704 coding upstream 1615139 48027409 ~ 48133974 (+)
LOC110491010 LOC106560692 coding downstream 301084 50068209 ~ 50093310 (+)
LOC110491026 LOC106560691 coding downstream 331262 50098387 ~ 50100624 (+)
LOC110491039 LOC106560690 coding downstream 383336 50150461 ~ 50159171 (+)
LOC110491040 LOC106560688 coding downstream 414175 50181300 ~ 50198685 (+)
LOC110491046 LOC106560687 coding downstream 456613 50223738 ~ 50236226 (+)
G153275 NA non-coding upstream 146781 49602123 ~ 49602332 (+)
G153274 NA non-coding upstream 147471 49601422 ~ 49601642 (+)
G153261 NA non-coding upstream 166874 49581922 ~ 49582239 (+)
G153260 NA non-coding upstream 167496 49581407 ~ 49581617 (+)
G153238 NA non-coding upstream 197271 49551509 ~ 49551842 (+)
G153391 NA non-coding downstream 8171 49775296 ~ 49775541 (+)
G153393 NA non-coding downstream 10346 49777471 ~ 49777700 (+)
G153394 NA non-coding downstream 12266 49779391 ~ 49779599 (+)
G153403 NA non-coding downstream 27339 49794464 ~ 49794708 (+)
G153406 NA non-coding downstream 31877 49799002 ~ 49819182 (+)
G152167 NA other upstream 1191427 48556782 ~ 48557686 (+)
G150997 NA other upstream 2201534 47497948 ~ 47547579 (+)
uevld uevld other upstream 2763887 46981686 ~ 47007672 (+)
G148191 NA other upstream 4256734 45472082 ~ 45492379 (+)
G147510 NA other upstream 4877613 44870800 ~ 44871500 (+)
G154859 NA other downstream 1398290 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 1554671 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 1645141 51412121 ~ 51417154 (+)
G155541 NA other downstream 1653722 51420847 ~ 51421122 (+)

Expression


Co-expression Network