LOC110490984 (LOC106560693)


Basic Information

Item Value
gene id LOC110490984
gene name LOC106560693
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 49962896 ~ 50037892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564372.2
CTTATACACATACCATTGGTGGCCGCTGACTGTCACTCAAGGTCTTAGTGGGTGTTACCAGTTGACTTCGTAGGATTTACGAACGTAATAGATCTGTGATTGACAGTAGACAACGACAGTCAGGCGCGATAGACACTACGAACAGAACACAGATACACTTTGCCTGTAACCGCGCAGTTTTAGATAAAGGACATCCAGAGTgagttgtatttttttattcCATCATCGCAAACAGACGGTTTTCAACTAGTGCCCTCTATCAGAGTTCATGAAGAAGTGACGACGCTTTTTACACTTTTACATTTGGTGCCTGGACTGGACGATTCATTGAGTGTCTTTATGTGACAGTTGTGCTATTTGTCCGTTTACTTTAGAGATGGCAGATTTACCGCTGCCGCAACAGTTGGTTGATATAGACCCGGATTTCGAGCCACTCTCGAGGCCCCGGTCATGCACCTGGCCTCTGCCTCGACCAGAGTTCATCGAACCCGCCTGCTCAAACACATCTTCACCGGCGCCTTCAGTCAAACAGGAGCCTGTCGAATACATCAGTAACCTCAGTTTTTTAGAAGAGTCAGAGGACTACCCGGAGGATCAGAAACCGCTTGTTTTGTGCAATGATTTTCAGTGCCAGGGGAACTGCATACACCCGCAGCAGGAGAAACAACATCCACAGCAGTTACAGCATCATCAGCAGCACCCGTGTCCTCAGCTGCCGCACCAGCAACAGGTGCCCCCGGTCTCATCCCCCAACGGGTCGAATTCGGTGGCCGCCGCCGCAGCCGTGCAGAGGAAAAGCAGCTCGTCGCGTCGGAACGCGTGGGGGAATATGTCCTACGCGGACCTCATCACCAAGGCGATAGAGAGCTCACTGGAGAAGCGACTCACCTTGTCTCAGATCTATGACTGGATGGTGAAGAGCGTGCCATATTTTAAGGATAAAGGAGACAGTAATAGCTCAGCAGGTTGGAAGAATTCCATCCGCCACAACCTGTCCCTCCACAGTCGTTTTGTTCGTGTGCAGAACGAGGGGACAGGGAAGAGCTCGTGGTGGATGCTGAACCCCGAGGGAGGGAAGAGCGGGAAGTCCCCCCGACGTAGAGCTGCCTCCATGGACAACAACAGCAAGTTCACCAAGAGCAGAGGACGGGCTGCCAAGAAGAAGGTGGCTCTCCAGGACGGGGTAGTTGGGGGTGCAGACAGCCCGGGAGGCTCCCAGTACTCCAAGTGGCTCGGCAGCCCCAACTCCCACAGCCACAGCAATGATGACTTCGAGGCCTGGACTACCTTCCGGACGCGTGCCTCCTCCGACGCCTCCACCCTCTCTGGCCGTCGCTCTCCCTTCCTGGAACAGGACATCGACCTATCAGAGGCCGATGTCCATATGGGCTACCCTGTAGGGATGGGGCCTAAGATTACCTCCATGGCCACCCTGCCCAGCCTATCAGAAGTGGGCCTGGCCGGCTCCATGGGGGGTCATCATCATGGTCACCACGGAACAGAGAATGTCATGGAGAGTCTCCTTGACAACCTCAACCTGCTGTCCCCCAAGAATCAAGGCCAGCTGGTGGTATGTGGTGGGCCTGGGTCTGGGCCCGACTCCTCAcggtcctccccctcctccatgcttcagaaCAGCCCCTATAGCTCCCCCTCCATGAACCCCCAACCCCAACAGCAGGACTACAGGAAGTGCCTCTATGGCCAGGCTGGGCCAGGCATGAACAGCCcacatctctcccccatccccatgcAGACGCTGCCAGAGAGCAAGCCTCCAGGGTCCTTTGCACACTTCCGGAGCCATTACAACTGCCCTGCTGGGCTCCTTAAGGAGCTGCTGACCTCTGAAGTAGCTGACCCCCGTGGTGGGGAGGCCATGCCCACCATGGAGACAGTAGTGTCCCAGTCAGGGAgagggcgaggaggaggagggcggaTGCTGCCCAACTACAGCAGCCAGGGGCAGGTGGGACAAGTGGGGGGGCACGGAGGGGTGAAGATGATGAGTCCCGCTCCTCAGCAACACACACGACACCCTCAGTCCCACACTCAAAATCCACACCCTCACCCACATCTGCAGCCTTTCCACAGCCAGGGCCAGTGCCCTCCCCCATCTGGGCCCTCCATGAACGGCTGTGGCCTGATTCCCTTGACCAGCCTCAACCACGCTGGGGGCCCTGCCCGTCTAGCCAGCCTCAGGACACACATCCACCAGCTACAGCAGCGGCCCCACAGTGGTGGTGGTCACCCAGTCTCAGGCCATCACAACCACAGTCCCCACCACAATGGAGCTCCCCCACCCAGCTACAGCAGCAGTGCTAATGGTTATGGGAGACCAGGTCCAGGTCCCAGCTCTGCTCATCCCCagttccaccaccaccaccaccatcatcatcatcatcaggagAGGCTGCCTAGTGATCTAGACGACATGTCCATCGAGAGGTTTGAGTGTGACATGGAGTCTGTTCTTCATGACACGCTGATGGACGGAGACTCGTTGGACTTCAACTTTGACCCCATGGTGACCACCCAGGGGTTTAGTCAGGGGGTTGGGGTGAAGACCACCACACACAGCTGGGTGTCtggctaagacacacacacacctctccgaCTCAGAGCAGACAGATTTTTCAACATTCTCCACTGGCCTTCATGAAGAGAATGGAAGAGTCTAAAGAAACCATTGCCCCTCTCCAGAGGACTATCATCAGCCCGTCCCAATTCTGTCACTATCCATTGCAGATATGTAAGGTGGAAGAAATCAGGTGGAAGCTCCATCACTAAACTGTGTTCACATATCTAGACCCTTTAGATTTGCAAAGATCAAGGTGTACGGAGGGACTGCGCTGGCTGAGACTGTGAGGGAAAGGCTGGTCTGAAGTTGGCCTTGTAAATATAGCAGCACAATACCATTCACTTCAACAGTACTTGgaagaagctggagactcttaaagcaatgttttattgtgaaaaatgttttgtgtttagtatgttattttagttttttggatCTCACATTATGTTTTTACGAGTGTGTATTTATCTTTTTTAGTTTGGCTTTAGCTCTTCAAAAACAACTGGAATGGAGTCGGTTCTGTTTCACATTCAAGTGGGGTCTGTCCCACCCTTCAAGGTGCTTCTCTATAAGGTTGTCAAAAAAAGTTTGACATATTATGTCTGAGTAAGATATTATCGATGTAAATATGCTACTATACttcaaacatacagtgcattcgggaaagtattcagaccgctcaactttttcctatttttttttacgttacagcctctttctaaaattgattcaactGTTTTTTGCCCCCAGATTTTTGCCCccgcatcaatctacacacaatacacagtaattacaaagcaaaatctttttttaaatttttttcttttacatttctgtaattatttaaaataaaaaaaactgaaatgtcacatttacataa
>XM_021564373.2
CTTATACACATACCATTGGTGGCCGCTGACTGTCACTCAAGGTCTTAGTGGGTGTTACCAGTTGACTTCGTAGGATTTACGAACGTAATAGATCTGTGATTGACAGTAGACAACGACAGTCAGGCGCGATAGACACTACGAACAGAACACAGATACACTTTGCCTGTAACCGCGCAGTTTTAGATAAAGGACATCCAGAGTgagttgtatttttttattcCATCATCGCAAACAGACGGTTTTCAACTAGTGCCCTCTATCAGAGTTCATGAAGAAGTGACGACGCTTTTTACACTTTTACATTTGGTGCCTGGACTGGACGATTCATTGAGTGTCTTTATGTGACAGTTGTGCTATTTGTCCGTTTACTTTAGAGATGGCAGATTTACCGCTGCCGCAACAGTTGGTTGATATAGACCCGGATTTCGAGCCACTCTCGAGGCCCCGGTCATGCACCTGGCCTCTGCCTCGACCAGAGTTCATCGAACCCGCCTGCTCAAACACATCTTCACCGGCGCCTTCAGTCAAACAGGAGCCTGTCGAATACATCAGTAACCTCAGTTTTTTAGAAGAGTCAGAGGACTACCCGGAGGATCAGAAACCGCTTGTTTTGTGCAATGATTTTCAGTGCCAGGGGAACTGCATACACCCGCAGCAGGAGAAACAACATCCACAGCAGTTACAGCATCATCAGCAGCACCCGTGTCCTCAGCTGCCGCACCAGCAACAGGTGCCCCCGGTCTCATCCCCCAACGGGTCGAATTCGGTGGCCGCCGCCGCAGCCGTGCAGAGGAAAAGCAGCTCGTCGCGTCGGAACGCGTGGGGGAATATGTCCTACGCGGACCTCATCACCAAGGCGATAGAGAGCTCACTGGAGAAGCGACTCACCTTGTCTCAGATCTATGACTGGATGGTGAAGAGCGTGCCATATTTTAAGGATAAAGGAGACAGTAATAGCTCAGCAGGTTGGAAGAATTCCATCCGCCACAACCTGTCCCTCCACAGTCGTTTTGTTCGTGTGCAGAACGAGGGGACAGGGAAGAGCTCGTGGTGGATGCTGAACCCCGAGGGAGGGAAGAGCGGGAAGTCCCCCCGACGTAGAGCTGCCTCCATGGACAACAACAGCAAGTTCACCAAGAGCAGAGGACGGGCTGCCAAGAAGAAGGTGGCTCTCCAGGACGGGGTAGTTGGGGGTGCAGACAGCCCGGGAGGCTCCCAGTACTCCAAGTGGCTCGGCAGCCCCAACTCCCACAGCCACAGCAATGATGACTTCGAGGCCTGGACTACCTTCCGGACGCGTGCCTCCTCCGACGCCTCCACCCTCTCTGGCCGTCGCTCTCCCTTCCTGGAACAGGACATCGACCTATCAGAGGCCGATGTCCATATGGGCTACCCTGTAGGGATGGGGCCTAAGATTACCTCCATGGCCACCCTGCCCAGCCTATCAGAAGTGGGCCTGGCCGGCTCCATGGGGGGTCATCATCATGGTCACCACGGAACAGAGAATGTCATGGAGAGTCTCCTTGACAACCTCAACCTGCTGTCCCCCAAGAATCAAGGCCAGCTGGTGGTATGTGGTGGGCCTGGGTCTGGGCCCGACTCCTCAcggtcctccccctcctccatgcttcagaaCAGCCCCTATAGCTCCCCCTCCATGAACCCCCAACCCCAACAGCAGGACTACAGGAAGTGCCTCTATGGCCAGGCTGGGCCAGGCATGAACAGCCcacatctctcccccatccccatgcAGACGCTGCCAGAGAGCAAGCCTCCAGGGTCCTTTGCACACTTCCGGAGCCATTACAACTGCCCTGCTGGGCTCCTTAAGGAGCTGCTGACCTCTGAAGTAGCTGACCCCCGTGGTGGGGAGGCCATGCCCACCATGGAGACAGTAGTGTCCCAGTCAGGGAgagggcgaggaggaggagggcggaTGCTGCCCAACTACAGCAGCCAGGGGCAGGTGGGACAAGTGGGGGGGCACGGAGGGGTGAAGATGATGAGTCCCGCTCCTCAGCAACACACACGACACCCTCAGTCCCACACTCAAAATCCACACCCTCACCCACATCTGCAGCCTTTCCACAGCCAGGGCCAGTGCCCTCCCCCATCTGGGCCCTCCATGAACGGCTGTGGCCTGATTCCCTTGACCAGCCTCAACCACGCTGGGGGCCCTGCCCGTCTAGCCAGCCTCAGGACACACATCCACCAGCTACAGCAGCGGCCCCACAGTGGTGGTGGTCACCCAGTCTCAGGCCATCACAACCACAGTCCCCACCACAATGGAGCTCCCCCACCCAGCTACAGCAGCAGTGCTAATGGTTATGGGAGACCAGGTCCAGGTCCCAGCTCTGCTCATCCCCagttccaccaccaccaccaccatcatcatcatcatcaggagAGGCTGCCTAGTGATCTAGACGACATGTCCATCGAGAGGTTTGAGTGTGACATGGAGTCTGTTCTTCATGACACGCTGATGGACGGAGACTCGTTGGACTTCAACTTTGACCCCATGGTGACCACCCAGGGGTTTAGTCAGGGGGTTGGGGTGAAGACCACCACACACAGCTGGGTGTCtggctaagacacacacacacctctccgaCTCAGAGCAGACAGTTTTGATTTTTCAGATTTTTCAACATTCTCCACTGGCCTTCATGAAGAGAATGGAAGAGTCTAAAGAAACCATTGCCCCTCTCCAGAGGACTATCATCAGCCCGTCCCAATTCTGTCACTATCCATTGCAGATATGTAAGGTGGAAGAAATCAGGTGGAAGCTCCATCACTAAACTGTGTTCACATATCTAGACCCTTTAGATTTGCAAAGATCAAGGTGTACGGAGGGACTGCGCTGGCTGAGACTGTGAGGGAAAGGCTGGTCTGAAGTTGGCCTTGTAAATATAGCAGCACAATACCATTCACTTCAACAGTACTTGgaagaagctggagactcttaaagcaatgttttattgtgaaaaatgttttgtgtttagtatgttattttagttttttggatCTCACATTATGTTTTTACGAGTGTGTATTTATCTTTTTTAGTTTGGCTTTAGCTCTTCAAAAACAACTGGAATGGAGTCGGTTCTGTTTCACATTCAAGTGGGGTCTGTCCCACCCTTCAAGGTGCTTCTCTATAAGGTTGTCAAAAAAAGTTTGACATATTATGTCTGAGTAAGATATTATCGATGTAAATATGCTACTATACttcaaacatacagtgcattcgggaaagtattcagaccgctcaactttttcctatttttttttacgttacagcctctttctaaaattgattcaactGTTTTTTGCCCCCAGATTTTTGCCCccgcatcaatctacacacaatacacagtaattacaaagcaaaatctttttttaaatttttttcttttacatttctgtaattatttaaaataaaaaaaactgaaatgtcacatttacataa

Function

NR:

description
forkhead box protein O1-A-like

GO: NA

KEGG:

id description
K07201 FOXO1; forkhead box protein O1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564372.2 False 3461 mRNA 0.52 4 49962896 50037892
XM_021564373.2 True 3475 mRNA 0.52 4 49962896 50037892

Neighbor

gene id symbol gene type direction distance location
LOC110490968 LOC105006464 coding downstream 125849 49801952 ~ 49837047 (-)
LOC118936760 NA coding downstream 223650 49738842 ~ 49739246 (-)
hmg20a hmg20a coding downstream 487525 49451688 ~ 49475371 (-)
peak1 peak1 coding downstream 535613 49166669 ~ 49427283 (-)
syt12 syt12 coding downstream 807635 49114742 ~ 49155261 (-)
plscr3a LOC106560726 coding upstream 86669 50124561 ~ 50127403 (-)
LOC118937274 NA coding upstream 91623 50129515 ~ 50131269 (-)
LOC110491057 LOC100136935 coding upstream 234326 50272218 ~ 50287727 (-)
LOC110491068 larp1 coding upstream 436740 50474632 ~ 50561307 (-)
rbm41 rbm41 coding upstream 627404 50665296 ~ 50678813 (-)
G153988 NA non-coding downstream 23149 49939297 ~ 49939747 (-)
G153958 NA non-coding downstream 50904 49911571 ~ 49911992 (-)
G153957 NA non-coding downstream 51380 49911230 ~ 49911516 (-)
G153949 NA non-coding downstream 55739 49906831 ~ 49907157 (-)
G153936 NA non-coding downstream 64683 49897967 ~ 49898213 (-)
G154271 LOC105007919 non-coding upstream 53284 50091176 ~ 50093305 (-)
G154307 NA non-coding upstream 78157 50116049 ~ 50116251 (-)
G154310 NA non-coding upstream 81428 50119320 ~ 50119588 (-)
G154313 NA non-coding upstream 89831 50127723 ~ 50127951 (-)
G152024 NA other downstream 1659233 48303311 ~ 48303663 (-)
G151920 NA other downstream 1735952 48226299 ~ 48226944 (-)
G151875 NA other downstream 1774618 48187958 ~ 48188278 (-)
G151474 NA other downstream 2111548 47850785 ~ 47851348 (-)
G150675 LOC100653436 other downstream 2757463 47194893 ~ 47205433 (-)
G154300 NA other upstream 63538 50101430 ~ 50107447 (-)
G154338 NA other upstream 118794 50156686 ~ 50157825 (-)
G155003 NA other upstream 377851 50415743 ~ 50452147 (-)
G155072 NA other upstream 541906 50579798 ~ 50581349 (-)
G155281 LOC106560681 other upstream 933184 50971076 ~ 50971935 (-)

Expression


Co-expression Network