LOC110491026 (LOC106560691)


Basic Information

Item Value
gene id LOC110491026
gene name LOC106560691
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50098387 ~ 50100624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564376.2
GAGAATACGTTTTATAATCACCAAGCTACCAGTGGGAGAGGGAGTTTTGATTTCAAGAAGGAACTCTACAGCAGTATCTCTTGATCTCAATTCTCAGAGTAGCCTAAAGGTCTGCATCTGAATAGTGAGTTGGTAGCAGGATGTTTTTGCTACGACTTTATTTACATCTCTGACATTTTAATTGTATAGTTTTCAACTAATGCTTGGGATGCTTGGTTGACATTTTCACCGACTTTTTACCAAGGAAGTTTGGTCAACCACTGCGAGGACAGCAGGCGTACTTTTAAAACTTTGTTCACAAATTGTATATTTCGTTTATGGTAAATATGTATAACATTATGGAGCACCAACTCAAGTCCTCTGGTCCCTCGCATCATCATGGAACAGGGATGCCACCTGCCAATGGAGGAGGGGGGCACGGGGGCGGCCACACAGGATCCAAACCACCGGCAATCCAACCCGACCCGATGGACAAAGTCAAGCGGCCCATGAATGCCTTCATGGTATGGTCTCGCGGTGAGCGACGGAAAATGGCCCAGGAGAATCCCAAAATGCACAATTCTGAGATATCCAAACGACTGGGTGTCGCGTGGAAATCTCTGACAGACGCAGAGAAAAGGCCCTTCATTGACGAGGCCAAGCGCCTCCGCGCGGTGCACATGAAGGATTATCCAGACTATAAATACAAACCCCGTCGTAAAACCAAACTAATGCCGAAGAACAATACTCTAGCCGCGCAGTATCAGATGTCGGCTGGTAACCACCTGCTGAGTGCGTCCACGGCTCAGGGACAAGGTGGAAACCCCAGAATCGACAGTTATGGCTGGGGCCACACCGGGGGCTACACAGCGGCGATGCAGAGCGAGGCGCTCGGCTACAGCCAGCAACTTCACCGCTATGACCTGTCAGCACTTCAGTATCAGTCCAGCGTGGCCCAGGCGCAGGCCTACATGAATGGTGCCAACGCATACAGCCCCATGTCCTACAGCAGCAGCCCCCAGCAGGTCAGCCCAGTGATGTCTATGGTGAAGCAGCAGTCTGATGGCCACAGCATGTCCCCCTCCCCTACGGGGACCCACAACCACCACCAGGTCCAGCGTGGTCCCCAGGTCCAGGGGGACCATCTCAGAGACATGATCAGCATGTACATGCCTGGGGGAGATGCTTCAGATGCCCAGAGGGGGTACTCTGCCTCGGCAGCTAACATCCAGCAGCATTACCTGGGAGGGTCAGCTCCACTCACCCACCTTTGAATTCACTCTTACCCACAACCTGATCTCACTTGGTCTGCTGGGATTGACTGGTGGTAGACAGATGTGGTTAGTAAATGTGTAGGGACTGAAGAAAGAAATTTAATTTTAATACAAAGATGCGATCAGTCACTGACACAAACACTATTTTGTGGCAAGATGATGTCATTGATTGGTTTCAGTGTACATTTCAGTTGGAACGCCTCAATGGTCATGAGTTATTGCAAACCCCAGATATTGTCCCATTCTGGCCTTTCTCTAAACCCCCTCATATGAAAATAGTTTTTAGGACTGAAATGGGATCTCAAAAAGTTGAAGTGGACTTTATCTTGATGAATTCTGAACAAAATGGCTTCGACGCTGACAATCCCAAGTTTTTCTCTCAGACTGCCTATTCTGTCTGTTTAGAAAGCGAATGTACATCTAAATGGGTCTATACACTTTGATTTATATTCAAGTTAACAGCAGTTGGTTTTTTATTTCACAACGTTTTGAAACAAAACTGAACAAATGTTTGAGGATTTTGTTATTGTTTAGTTTAAATCAATGCTGCTTTCTAAGGTTCAGGCCTTATTTAGAGTTGTGAAATGTATTGAATAATGTTTTTATTAATGCCCTTATAGTAAGGGTATTGTTATTTCAAGTCACTTGACGgtaataatgtaaaaacaaaagaaATAAAGATTTGTTTTAtaatttt
>TU176287
CAGTGGGAGAGGGAGTTTTGATTTCAAGAAGGAACTCTACAGCAGTATCTCTTGATCTCAATTCTCAGAGTAGCCTAAAGGTCTGCATCTGAATACCCCATGTCCTACAGCAGCAGCCCCCAGCAGGTCAGCCCAGTGATGTCTATGGTGAAGCAGCAGTCTGATGGCCACAGCATGTCCCCCTCCCCTACGGGGACCCACAACCACCACCAGGTCCAGCGTGGTCCCCAGGTCCAGGGGGACCATCTCAGAGACATGATCAGCATGTACATGCCTGGGGGAGATGCTTCAGATGCCCAGAGGGGGTACTCTGCCTCGGCAGCTAACATCCAGCAGCATTACCTGGGAGGGTCAGCTCCACTCACCCACCTTTGAATTCACTCTTACCCACAACCTGATCTCACTTGGTCTGCTGGGATTGACTGGTGGTAGACAGATGTGGTTAGTAAATGTGTAGGGACTGAAGAAAGAAATTTAATTTTAATACAAAGATGCGATCAGTCACTGACACAAACACTATTTTGTGGCAAGATGATGTCATTGATTGGTTTCAGTGTACATTTCAGTTGGAACGCCTCAATGGTCATGAGTTATTGCAAACCCCAGATATTGTCCCATTCTGGCCTTTCTCTAAACCCCCTCATATGAAAATAGTTTTTAGGACTGAAATGGGATCTCAAAAAGTTGAAGTGGACTTTATCTTGATGAATTCTGAACAAAATGGCTTCGACGCTGACAATCCCAAGTTTTTCTCTCAGACTGCCTATTCTGTCTGTTTAGAAAGCGAATGTACATCTAAATGGGTCTATACACTTTGATTTATATTCAAGTTAACAGCAGTTGGTTTTTTATTTCACAACGTTTTGAAACAAAACTGAACAAATGTTTGAGGATTTTGTTATTGTTTAGTTTAAATCAATGC

Function

NR:

description
transcription factor Sox-19a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564376.2 False 1950 mRNA 0.46 2 50098387 50100624
TU176287 True 922 TUCP 0.44 2 50098416 50100474

Neighbor

gene id symbol gene type direction distance location
LOC110491010 LOC106560692 coding upstream 5077 50068209 ~ 50093310 (+)
LOC110490948 LOC106560694 coding upstream 331262 49749113 ~ 49767125 (+)
cdkn1cb LOC106560698 coding upstream 1359836 48736519 ~ 48738551 (+)
prr5l prr5l coding upstream 1596507 48481528 ~ 48501880 (+)
fcsk fuk coding upstream 1650600 48394983 ~ 48447787 (+)
LOC110491039 LOC106560690 coding downstream 49837 50150461 ~ 50159171 (+)
LOC110491040 LOC106560688 coding downstream 80676 50181300 ~ 50198685 (+)
LOC110491046 LOC106560687 coding downstream 123114 50223738 ~ 50236226 (+)
LOC110510939 faxdc2 coding downstream 323509 50424133 ~ 50433556 (+)
LOC110515922 faxdc2 coding downstream 359723 50460347 ~ 50470125 (+)
G154059 NA non-coding upstream 62007 50036103 ~ 50036380 (+)
G154020 NA non-coding upstream 118331 49979761 ~ 49980056 (+)
G154018 NA non-coding upstream 120799 49977377 ~ 49977588 (+)
G154017 NA non-coding upstream 121776 49976343 ~ 49976611 (+)
G153978 NA non-coding upstream 166772 49931389 ~ 49931615 (+)
G154105 NA non-coding downstream 10325 50110949 ~ 50111262 (+)
G154110 NA non-coding downstream 17681 50118305 ~ 50118642 (+)
G154111 NA non-coding downstream 18123 50118747 ~ 50119001 (+)
G154119 NA non-coding downstream 28235 50128859 ~ 50129073 (+)
G154180 NA non-coding downstream 136853 50237477 ~ 50244279 (+)
G152167 NA other upstream 1540701 48556782 ~ 48557686 (+)
G150997 NA other upstream 2550808 47497948 ~ 47547579 (+)
uevld uevld other upstream 3113161 46981686 ~ 47007672 (+)
G148191 NA other upstream 4606008 45472082 ~ 45492379 (+)
G147510 NA other upstream 5226887 44870800 ~ 44871500 (+)
G154859 NA other downstream 1064791 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 1221172 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 1311642 51412121 ~ 51417154 (+)
G155541 NA other downstream 1320223 51420847 ~ 51421122 (+)
G156000 LOC106560791 other downstream 1715886 51816510 ~ 51824182 (+)

Expression


Co-expression Network