LOC118937274


Basic Information

Item Value
gene id LOC118937274
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50129515 ~ 50131269 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034525.1
catttgcacacactgttcatagatttttctattgtgttattgactctacGTTTGTTTGTAACTCttttgtttttgtcgcactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaactggcctacctggttaaataaaggtgaaataaaaaaatgaagaCCATCAGTCGGTTGATGCAGTCATTTTGAGCGAGGATGGAAGCCCCTCACGAAAGCATCAAAGATCTGATGACGAGGCAAACAATctaatAGAGAGAATAATTAAGGAAAAGCCTGGTGGAGAGGTTGTCATCAAGGAGTACTACAAAACTAAAAGCCTGATTGACTGCACCAGACGAAAGATGATCAATATTCTTGTTTCGGCGATGACAGACTCTCACGGGTAAGTTTAAAGTAAAGATGCATAATGAAAATTGTTGAGCATTACTAGCTCTCATATCTGCTCAATGTTAAAAATGACTTCTGTATCAGTATCTCAGTCACATAATTGGTTAGGCTAATGCTTACCATCCACTGCTATTGGTAGAAGATTTCTCTTGTATCAAATTCGATGGGCATGATACTGATTCAAAAATCACTCCTGATATTTAGCTTACTGGGGACCAAAGCAAATGGGATTTGGTTATTTGTTTTTTCTTTCAAGATTAGTAACCATGTTCATTTTCTTAAAGAACAATATTACGACCCTAATATTAAAGGGTACCTCGCGTATCGAATGAAAACCGTTCAGAGGTATTTGGCTTCATCTGAGAAACGGCCCACTCAACTATAATATGGAGGGCCAGCTGCTGAGAGGGAGTCCAGTTCATCCACTTTGGCTACCCTGAGTGAAGACCGGTGCAGAGATGCCATTCCTCTTATGAAGCATTGTTCTGATGAAAGTCAAACAGAAGATGAGATTGACCTTTGAGTACAGGAAGAAGATGACCCACGACCCGAGTAAATGCTCCACCATCCTAACCGAATTTCCACGCTTTCTGGATGTGAAGGGCTTGATTGAACAGTGTTTTGTGCTGCTGTTTGGAGAGGGAACATCAAGTTTTTGGAGAGGTGACCAACTATATTCAAGCAAAAGATCATCATGATAAGCAAGGCCACTCAGGGAGCTGAACTTCAGGAGCTGATCCAGATGGCAGATTCTGCAGTTAATGAGGGAGCTGACATGAA
>TU176530
GCCCACTCAACTATAATATGGAGGGCCAGCTGCTGAGAGGGAGTCCAGTTCATCCACTTTGGCTACCCTGAGTGAAGACCGGTGCAGAGATGCCATTCCTCTTATGAAGCATTGTTCTGATGAAAGTCAAACAGAAGATGAGATTGACCTTTGAGTACAGGAAGAAGATGACCCACGACCCGAGTAAATGCTCCACCATCCTAACCGAATTTCCACGCTTTCTGGATGTGAAGGGCTTGATTGAACAGTGTTTTGTGCTGCTGTTTGGAGAGGGAACATCAAGTTTTTGGAGAGGTGACCAACTA
>TU176531
gaattgcaaaaatcactgaagctggagtcttatatctccctctaactttaagcatcagctgtcagagcagctgaccgatcactgtacctgtcactgtacctgtacacagccaatctgtaaatagcacactcaactaccatattgttatttatcttcttgctcttttgcaccccagtatctctacttgcacatcatcatctgcacatctatcactccagtgttaatgctaaattgtaattgttttgcctctatggcctatttattgccttacctccctactcttctccatttgcacacactgttcatagatttttctattgtgttattgactctacGTTTGTTTGTAACTCttttgtttttgtcgcactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaactggcctacctggttaaataaaggtgaaataaaaaaatgaagaCCATCAGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034525.1 False 1184 mRNA 0.41 3 50129515 50130983
TU176530 False 305 lncRNA 0.35 2 50129621 50130137
TU176531 True 471 lncRNA 0.39 1 50130799 50131269

Neighbor

gene id symbol gene type direction distance location
plscr3a LOC106560726 coding downstream 2112 50124561 ~ 50127403 (-)
LOC110490984 LOC106560693 coding downstream 91623 49962896 ~ 50037892 (-)
LOC110490968 LOC105006464 coding downstream 292468 49801952 ~ 49837047 (-)
LOC118936760 NA coding downstream 390269 49738842 ~ 49739246 (-)
hmg20a hmg20a coding downstream 654144 49451688 ~ 49475371 (-)
LOC110491057 LOC100136935 coding upstream 141235 50272218 ~ 50287727 (-)
LOC110491068 larp1 coding upstream 343649 50474632 ~ 50561307 (-)
rbm41 rbm41 coding upstream 534313 50665296 ~ 50678813 (-)
LOC110491182 LOC106602821 coding upstream 775653 50906636 ~ 50954275 (-)
LOC110491226 NA coding upstream 853149 50984132 ~ 50984985 (-)
G154313 NA non-coding downstream 1564 50127723 ~ 50127951 (-)
G154310 NA non-coding downstream 9927 50119320 ~ 50119588 (-)
G154307 NA non-coding downstream 13264 50116049 ~ 50116251 (-)
G154271 LOC105007919 non-coding downstream 36210 50091176 ~ 50093305 (-)
G154249 NA non-coding downstream 144506 49984745 ~ 49985009 (-)
G154316 NA non-coding upstream 532 50131515 ~ 50131798 (-)
G154355 NA non-coding upstream 47820 50178803 ~ 50196982 (-)
G154430 NA non-coding upstream 170841 50301824 ~ 50304149 (-)
G154989 NA non-coding upstream 262393 50393376 ~ 50446304 (-)
G155008 NA non-coding upstream 296129 50427112 ~ 50465114 (-)
G154300 NA other downstream 22068 50101430 ~ 50107447 (-)
G152024 NA other downstream 1825852 48303311 ~ 48303663 (-)
G151920 NA other downstream 1902571 48226299 ~ 48226944 (-)
G151875 NA other downstream 1941237 48187958 ~ 48188278 (-)
G151474 NA other downstream 2278167 47850785 ~ 47851348 (-)
G154338 NA other upstream 25703 50156686 ~ 50157825 (-)
G155003 NA other upstream 284760 50415743 ~ 50452147 (-)
G155072 NA other upstream 448815 50579798 ~ 50581349 (-)
G155281 LOC106560681 other upstream 840093 50971076 ~ 50971935 (-)
LOC110491241 LOC106560679 other upstream 908887 51039870 ~ 51050197 (-)

Expression


Co-expression Network