LOC110491046 (LOC106560687)


Basic Information

Item Value
gene id LOC110491046
gene name LOC106560687
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50223738 ~ 50236226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564422.2
CGTAGACGATGAGATCATCAACGTGCGCACTACACAGACAATACAGGCAGGCCCCATTCTGTTGTATCCGGCTGCAGTAAAATGCAATAATCTAAGAATTTGTCTACACGATCAGAATATTGTGTCTTGTATATGAAATAATCGTAATATTCCTGAAACCATGCAGTGTCCAGATGACACTAGTCTAAATACACCAGAAGAGAGAACCTGTCTTTCCTCTGCGCAAAGAAGAGCAGAAATTCGGAGACGAAAATTGCTCATGAATTCTGAAGACAGAATGAACAGAATTGTGGGTTTCGCCAAAGCAGAAGCTGAAAACGACGGATCATCCAGAAGTGTCACGGCACCCGTGTTCCATCTGGACTTGGACAGGAGCGACTCGTGGTCAACATACCCCTCCCCCAGACTGTCTCCATTCCTCCCAGAGGCAGTAGGCAGCAGCCACCCCCACAGTGATCTCCCAGGGTATCCCCTGCCAGACACCAGCGAGGTGCTGGGTGGCAGTGTGGACAAGGATGTGACACCGGGCGTCCGTCAGAGGCCACGCGGAGAGGCCCATCTGGCAGCTGATGAGCCCAGCCACTCCGGATCCCCACGCAGAGGGTTGCAGAAGTACCTGTCCCGCTTTGATGATGCCATGAAGCTCAGAGGCCAACTGGCCAATGAGAAACAAGCCCAGGAGGCAGCTAGCTCTGACCCAGATGAGTTGGACTCCTTCAGGCTCTTCAGGCTTGTTGGCAGTGTCCTCCTTGCTATCTTTGTCAGGGTTTTTGTCTGCAAGTATCTGTCCATATTCGCACCATTCCTCACCCTCGAACTGGCATACATGGGGTTGTACAAATATTTTCCAAAGGTTGAGAAGAAGATGCAAACTACAGTGCTGACTGCCGCGCTCCTGTTGTCTGGTATCCCTGCTGAGGTCATCAACCGCTCCATGGACACCTACAAGAAGATGGGCGACGTCTTCGCTGACCTCTGTGTCTACTTCTTTACATTCATCCTCAGTCACGAGATCCTGCTGTTGGTTGGTCCAGAGGAGGCTGAGACTCCCTGATGGACAGGAAGTCCCTGTGCTATGGCGATGTCACAGAAGTGGACCCCTGATACTGATCCTTTACCCTACCTCCTTCTCCACACCATTTCCCTTCCTGAGTCAGTAGATCCCATAGGGGAGAGAGGGTCGAAGGTGCAATGTCCGCAGGTAGATAAGGGAATAAGACAGAAATAACAGGTTGAACAAGGTAACATAACATTCATTTGGGTTCTGACCCTCTACGACATCTTGTCGATAGGAGCTGCTTTAAGTTCCCTTTTATTTTGCTTTCTACAATGTTTATATAAGGGGTCCAGTTACTTCgcaatttttgttttgtttctggtGAATTGAGTTCTCATTTGGAAGACATACCCTTGTATGCTTAAAGAGTCTAAGCTCTTAGTACATTTACCTTTTAATCTGGGCTAGGAAAAggatagggctcccgagtggctcagcagtctaaggcactgcatctcagtgctagaggcgtcactacaaaccctggttcgatcctgggctgtatcacaaccggccgtgattgtgaTTGGAAGTCTCAAAGGgcgcgcacaattggcccagcgtcgtccgggtttgggtttagccggggtaggtcgtcatagtaaataagaatttgttcttaactgacttgcctagttaaataaaagttaaatttAAAAATGAAAAGGATGGCTTAGGAGTGTCTTTTTGGAAAGTGCGTGTTGTCACTGATATTCAATGTGGGAGCAGTGGGATCTTATCAGCTTGTATATCTGTGCTGGATAACTCTGATTGTGGAAATGTCATGTATTGCTATCCCAGCCTCACTCAAACTCTGTGGCATGTTACATCATCTGTTAATCCCTCATTGTACCCAAATTAATGTATTCAGTTTGAGACAGGTTTTCTATGTAACTTCATTGGTGTGATATCTTGTTTGTCAGATTTACTTGAATGTTTTgcaattatttatatttttttgtataaatgctgtattcataatttatttcatgTGAAATTTTGAAATCGATATCAACACAAAGATATAGAGAAGCTAATGTTGCTTCTGGTAATAACATACTGGAATTAATATGCTGTATTAAACCAATAAAACCTTGGAGCATTTCAC

Function

NR:

description
calcium signal-modulating cyclophilin ligand-like

GO: NA

KEGG:

id description
K22385 CAMLG; calcium signal-modulating cyclophilin ligand

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564422.2 True 2165 mRNA 0.46 4 50223738 50236226

Neighbor

gene id symbol gene type direction distance location
LOC110491040 LOC106560688 coding upstream 25053 50181300 ~ 50198685 (+)
LOC110491039 LOC106560690 coding upstream 64567 50150461 ~ 50159171 (+)
LOC110491026 LOC106560691 coding upstream 123114 50098387 ~ 50100624 (+)
LOC110491010 LOC106560692 coding upstream 130428 50068209 ~ 50093310 (+)
LOC110490948 LOC106560694 coding upstream 456613 49749113 ~ 49767125 (+)
LOC110510939 faxdc2 coding downstream 187907 50424133 ~ 50433556 (+)
LOC110515922 faxdc2 coding downstream 224121 50460347 ~ 50470125 (+)
zgc:56585 pgdh coding downstream 339190 50575416 ~ 50580216 (+)
LOC110491108 NA coding downstream 442588 50678814 ~ 50689147 (+)
LOC110491126 LOC106602822 coding downstream 481354 50717580 ~ 50884089 (+)
G154119 NA non-coding upstream 94665 50128859 ~ 50129073 (+)
G154111 NA non-coding upstream 104737 50118747 ~ 50119001 (+)
G154110 NA non-coding upstream 105096 50118305 ~ 50118642 (+)
G154105 NA non-coding upstream 112476 50110949 ~ 50111262 (+)
G154059 NA non-coding upstream 187358 50036103 ~ 50036380 (+)
G154180 NA non-coding downstream 1251 50237477 ~ 50244279 (+)
G154199 NA non-coding downstream 23168 50259394 ~ 50259673 (+)
G154204 NA non-coding downstream 29709 50265935 ~ 50266159 (+)
G154431 NA non-coding downstream 68647 50304873 ~ 50397242 (+)
G154487 NA non-coding downstream 144110 50380336 ~ 50447003 (+)
G152167 NA other upstream 1666052 48556782 ~ 48557686 (+)
G150997 NA other upstream 2676159 47497948 ~ 47547579 (+)
uevld uevld other upstream 3238512 46981686 ~ 47007672 (+)
G148191 NA other upstream 4731359 45472082 ~ 45492379 (+)
G154859 NA other downstream 929189 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 1085570 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 1176040 51412121 ~ 51417154 (+)
G155541 NA other downstream 1184621 51420847 ~ 51421122 (+)
G156000 LOC106560791 other downstream 1580284 51816510 ~ 51824182 (+)

Expression


Co-expression Network