LOC110491057 (LOC100136935)


Basic Information

Item Value
gene id LOC110491057
gene name LOC100136935
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50272218 ~ 50287727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564431.2
TGACTTTTGTAGGAGAAGATTACAAACCTTGTCAGGGAATATAGCTGGGGAGTTGGAGTATTGCGATAAAATGTTGAATTGAGTAATGTTTTTCTGAATGAGTGCATGGATGACGATAGGCTCCGACTAGAAGACGTTTGAGAATTAACAATATTACATGAGAGGCATCTAAATGGAATTTATTTTGTCGAAGAATGTAATCCCTTGCGGAAATACAGGTGGAATGAATTTGGACAGAATCGCAGAGACCGTGAGATCCCCACCGACGCGCGACATGGCCTCTACGTTTCACTTGCCGAGAACTGCAAACAACACTCGAGAAACGTTGGAGAACTCAAGCAGCGAGTCATCAGATACTGAAATAACAGAAAAGGAGAGGAGTGTAGAACACAGAAGTGACGATGGAAACGCGGATGACCCCAAAAAGAAGAAAGCGAGGCGGCAGAGGACTCATTTCACCAGCCAGCAGCTGCAGGAGCTCGAGGCCACCTTTCAGCGGAACCGCTACCCCGATATGAGCACGAGAGAGGAAATAGCTGTGTGGACCAACCTCACCGAGGCCAGAGTCAGGGTGTGGTTCAAAAATCGCAGGGCCAAATGGAGGAAGCGTGAACGCAACCAGCAAATGGACCTGTGCAAGAACAGCTACCTGCCCCAGTTCAGTGGCCTCATGCAGCCCTATGACGACATGTATCCCACCTACACCTACAACAACTGGACGAACAAAGGACTGACCCCGGCTAATCTGTCCACAAAGAACTTCACTTTTTTCAACTCAATGAGCCCACTCACATCCCAGTCAATGTTCTCAGCTCCTAACTCCATCTCCTCTATGACTATGGCCGGAAGTATGGGGGGGCACTCGGCTGTACCGGGGATGCCAACTGCGGGCCTGAACAACATCAGCAATTTTAACGGCATCGGCACCGCTACAATCAACTCAGCCATGTCCTCGTCGTCCTGTCCGTATGGGCCTCCCGGTTCCCCTTACAGCGTATACAGAGACACATGTAACTCTAGCCTGGCGACCCTGAGACTGAAATCGAAACAGCACCCAACCTTTGGATACAGCGGGTTGCAAAGTCCCGGGTCTAGCCTTAACGCCTGTCAATACAACAGCTGACGTATCAGCCGTGATGAAAATAATTTGCGGACAGCTCTAAACCTAGTAGCCTAGCCTACCTGCGAATGGAGCGAAAGACAACTAAACTGGATTAGTTgcaatcatttatttttcaaatgaaTTATGCGGGTTGTGGCCTATGTGTTTACCAATGAACTTGTAGGCTACAACAAtttaaatgtccatgtttttTGGATTTAAAAGTGATGATGAAGATGTGTTACATTGCAACGTTGTACATTAGCCTACATAAGAAACAGACAAAGGATCTCCTATGCATGTTCGCTTACTTGCTTTGAGGGCTCAAACCCATTTGAACTGACTTGCATTGGTCTaaaccagcgtttcccaaactcggtcctggggaccccaaggagtgcacgtttttttttttgccctagcactacacagccgaTTCAAATATTCAACCAAAACCCCCTTGGGGTCCTGAGTACCGAGTTTGGTCAACGCTGGCCTAGGCCCTGTACTCTTGGTCTTGGATTAGAAACAGTTTGGTAAACTTGGATTAGAAACCAAGAAGTGCAACACATATAACTAGACATATCCCGGACTCTGTAGAAGAACAATTGTATTGTACATAGCTCAGACTTTTATGTTGCTCATGTGTTTTACCGTTTATGCAGGGGGTGCCACTGGCCCACCCAATTgtgtcctgtttctgtagcatgacTTTACCTTTAAATGCTCTGTCTGGAGTATTTTCGTTTTATTTGTTTGTTAAAAATAGAATTTCTGCATTTTTAACTAGGGTGCAAAGTGTTTTGTACGAGTTGATAATAATGTAAGATAAAGCAAAATCCATTATACTGTATTCAAAAGGTGATTGAAAAGTAACTTCATGTGTTTATGGTAATATGTTTGAATAAACTACAGCAGAAAGAAGTGCATTTCAGATATTAAACGACAGAAAAGGTATACATGACAAAACATAATATGGTCCAAGTTTATGGAATAAAAGATAGGAGtgcaaagtaaacagcctataaTTAATTATTTCAGGGATGACAACTCAAACCAATTTTCACCTGCACACATGTAAACCCCCCTAGAGCACGGCTTCCCAAACCTGACCatgtaaataaaaaaatttaaaaaaaaattgaaataattACAAATGATAGGCTAACTTTTTAAAATTAGGGCTATGAAAGTATTttacaaatcagtctgacagGACCTTTGACAGTATTTCAATCTGAAGTATGGTGGTTTGAAGCGACTGAAATCAGAATCAGAAAGGTCTGGGCAATCATTTTGTATGATATTCTGTGTAGAAAATAACATCCCctctgggcacagacatcagttcaacgttcaaatttacatttggttgagttgtcaactaacgtcaATTCAACGTGAAATTAAccaaacatttcaccatgtcattgaatTTATGCGAAAGGTTGGGTAAAACAAATACGAAATTCCCTTAGTTGATGGCTTTTtgaaaatccaatcagtttttccAGGTTGATTGAACATCATTACATATattttttggttgaaatgacgtggaaacaatgctGATTCAACCCGTTTTTGCTTTAACCAGGTATCCATGCAAAGTAGGCTACATGTCAGATAAAAAAATGTCACAGCATATTTGTCGGTAAACTTTCCATATGTTGACAAAACTAAATAAACCTACCTTTAACAAGATGGGACCTTTTTGTGTAGTTAAAATTATTTATGTGAGAAATTGCGGTGGTAAGCCTTTATGCggaaatattgatataataaccatcatatcaaagtagACTTGGAGTCAGGAGATGATGTGTAATGTGATTCTCCCACTAtgactcgggaaagcatgcagtttattaggctacatattAAATAAATTATGATAAATTTCACAGGATGGTGAAAGTGCACGATGATGAGCTTGTGGCatttt
>XM_036950023.1
AGCTATCAAAGCGCATACTTGGACACAGCATATGCCCGCACTTAAGTGGATCTATTTCACACCTGCATGGGGACAGAGTAaagatttgtttatttattttctgggAATTAACTGGCATCTAAATGGAATTTATTTTGTCGAAGAATGTAATCCCTTGCGGAAATACAGGTGGAATGAATTTGGACAGAATCGCAGAGACCGTGAGATCCCCACCGACGCGCGACATGGCCTCTACGTTTCACTTGCCGAGAACTGCAAACAACACTCGAGAAACGTTGGAGAACTCAAGCAGCGAGTCATCAGATACTGAAATAACAGAAAAGGAGAGGAGTGTAGAACACAGAAGTGACGATGGAAACGCGGATGACCCCAAAAAGAAGAAAGCGAGGCGGCAGAGGACTCATTTCACCAGCCAGCAGCTGCAGGAGCTCGAGGCCACCTTTCAGCGGAACCGCTACCCCGATATGAGCACGAGAGAGGAAATAGCTGTGTGGACCAACCTCACCGAGGCCAGAGTCAGGGTGTGGTTCAAAAATCGCAGGGCCAAATGGAGGAAGCGTGAACGCAACCAGCAAATGGACCTGTGCAAGAACAGCTACCTGCCCCAGTTCAGTGGCCTCATGCAGCCCTATGACGACATGTATCCCACCTACACCTACAACAACTGGACGAACAAAGGACTGACCCCGGCTAATCTGTCCACAAAGAACTTCACTTTTTTCAACTCAATGAGCCCACTCACATCCCAGTCAATGTTCTCAGCTCCTAACTCCATCTCCTCTATGACTATGGCCGGAAGTATGGGGGGGCACTCGGCTGTACCGGGGATGCCAACTGCGGGCCTGAACAACATCAGCAATTTTAACGGCATCGGCACCGCTACAATCAACTCAGCCATGTCCTCGTCGTCCTGTCCGTATGGGCCTCCCGGTTCCCCTTACAGCGTATACAGAGACACATGTAACTCTAGCCTGGCGACCCTGAGACTGAAATCGAAACAGCACCCAACCTTTGGATACAGCGGGTTGCAAAGTCCCGGGTCTAGCCTTAACGCCTGTCAATACAACAGCTGACGTATCAGCCGTGATGAAAATAATTTGCGGACAGCTCTAAACCTAGTAGCCTAGCCTACCTGCGAATGGAGCGAAAGACAACTAAACTGGATTAGTTgcaatcatttatttttcaaatgaaTTATGCGGGTTGTGGCCTATGTGTTTACCAATGAACTTGTAGGCTACAACAAtttaaatgtccatgtttttTGGATTTAAAAGTGATGATGAAGATGTGTTACATTGCAACGTTGTACATTAGCCTACATAAGAAACAGACAAAGGATCTCCTATGCATGTTCGCTTACTTGCTTTGAGGGCTCAAACCCATTTGAACTGACTTGCATTGGTCTaaaccagcgtttcccaaactcggtcctggggaccccaaggagtgcacgtttttttttttgccctagcactacacagccgaTTCAAATATTCAACCAAAACCCCCTTGGGGTCCTGAGTACCGAGTTTGGTCAACGCTGGCCTAGGCCCTGTACTCTTGGTCTTGGATTAGAAACAGTTTGGTAAACTTGGATTAGAAACCAAGAAGTGCAACACATATAACTAGACATATCCCGGACTCTGTAGAAGAACAATTGTATTGTACATAGCTCAGACTTTTATGTTGCTCATGTGTTTTACCGTTTATGCAGGGGGTGCCACTGGCCCACCCAATTgtgtcctgtttctgtagcatgacTTTACCTTTAAATGCTCTGTCTGGAGTATTTTCGTTTTATTTGTTTGTTAAAAATAGAATTTCTGCATTTTTAACTAGGGTGCAAAGTGTTTTGTACGAGTTGATAATAATGTAAGATAAAGCAAAATCCATTATACTGTATTCAAAAGGTGATTGAAAAGTAACTTCATGTGTTTATGGTAATATGTTTGAATAAACTACAGCAGAAAGAAGTGCATTTCAGATATTAAACGACAGAAAAGGTATACATGACAAAACATAATATGGTCCAAGTTTATGGAATAAAAGATAGGAGtgcaaagtaaacagcctataaTTAATTATTTCAGGGATGACAACTCAAACCAATTTTCACCTGCACACATGTAAACCCCCCTAGAGCACGGCTTCCCAAACCTGACCatgtaaataaaaaaatttaaaaaaaaattgaaataattACAAATGATAGGCTAACTTTTTAAAATTAGGGCTATGAAAGTATTttacaaatcagtctgacagGACCTTTGACAGTATTTCAATCTGAAGTATGGTGGTTTGAAGCGACTGAAATCAGAATCAGAAAGGTCTGGGCAATCATTTTGTATGATATTCTGTGTAGAAAATAACATCCCctctgggcacagacatcagttcaacgttcaaatttacatttggttgagttgtcaactaacgtcaATTCAACGTGAAATTAAccaaacatttcaccatgtcattgaatTTATGCGAAAGGTTGGGTAAAACAAATACGAAATTCCCTTAGTTGATGGCTTTTtgaaaatccaatcagtttttccAGGTTGATTGAACATCATTACATATattttttggttgaaatgacgtggaaacaatgctGATTCAACCCGTTTTTGCTTTAACCAGGTATCCATGCAAAGTAGGCTACATGTCAGATAAAAAAATGTCACAGCATATTTGTCGGTAAACTTTCCATATGTTGACAAAACTAAATAAACCTACCTTTAACAAGATGGGACCTTTTTGTGTAGTTAAAATTATTTATGTGAGAAATTGCGGTGGTAAGCCTTTATGCggaaatattgatataataaccatcatatcaaagtagACTTGGAGTCAGGAGATGATGTGTAATGTGATTCTCCCACTAtgactcgggaaagcatgcagtttattaggctacatattAAATAAATTATGATAAATTTCACAGGATGGTGAAAGTGCACGATGATGAGCTTGTGGCatttt

Function

NR:

description
pituitary homeobox 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09356 PITX1; paired-like homeodomain transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564431.2 False 3047 mRNA 0.41 5 50272218 50287180
XM_036950023.1 True 2997 mRNA 0.42 5 50272218 50287727

Neighbor

gene id symbol gene type direction distance location
LOC118937274 NA coding downstream 141235 50129515 ~ 50131269 (-)
plscr3a LOC106560726 coding downstream 144815 50124561 ~ 50127403 (-)
LOC110490984 LOC106560693 coding downstream 234326 49962896 ~ 50037892 (-)
LOC110490968 LOC105006464 coding downstream 435171 49801952 ~ 49837047 (-)
LOC118936760 NA coding downstream 532972 49738842 ~ 49739246 (-)
LOC110491068 larp1 coding upstream 186905 50474632 ~ 50561307 (-)
rbm41 rbm41 coding upstream 377569 50665296 ~ 50678813 (-)
LOC110491182 LOC106602821 coding upstream 618909 50906636 ~ 50954275 (-)
LOC110491226 NA coding upstream 696405 50984132 ~ 50984985 (-)
LOC110491241 LOC106560679 coding upstream 754210 51039870 ~ 51050197 (-)
G154355 NA non-coding downstream 75236 50178803 ~ 50196982 (-)
G154316 NA non-coding downstream 140420 50131515 ~ 50131798 (-)
G154313 NA non-coding downstream 144267 50127723 ~ 50127951 (-)
G154310 NA non-coding downstream 152630 50119320 ~ 50119588 (-)
G154430 NA non-coding upstream 14097 50301824 ~ 50304149 (-)
G154989 NA non-coding upstream 105649 50393376 ~ 50446304 (-)
G155008 NA non-coding upstream 139385 50427112 ~ 50465114 (-)
G155009 NA non-coding upstream 141824 50429551 ~ 50430060 (-)
G155013 NA non-coding upstream 144074 50431801 ~ 50468393 (-)
G154338 NA other downstream 114393 50156686 ~ 50157825 (-)
G154300 NA other downstream 164771 50101430 ~ 50107447 (-)
G152024 NA other downstream 1968555 48303311 ~ 48303663 (-)
G151920 NA other downstream 2045274 48226299 ~ 48226944 (-)
G151875 NA other downstream 2083940 48187958 ~ 48188278 (-)
G155003 NA other upstream 128016 50415743 ~ 50452147 (-)
G155072 NA other upstream 292071 50579798 ~ 50581349 (-)
G155281 LOC106560681 other upstream 683349 50971076 ~ 50971935 (-)
G155610 NA other upstream 1124542 51412269 ~ 51417110 (-)

Expression


Co-expression Network