LOC110515922 (faxdc2)


Basic Information

Item Value
gene id LOC110515922
gene name faxdc2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50460347 ~ 50470125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950046.1
CGCAGCCTTGTGCGTCTTTTCGCGGTCAGCTGACAATTTATCCACCAATCATAAGTCGTATAGGGTTGAAAATCCATCCAATTGAAGCTGCGACTTGTACGTGAAAAAATAGGCTGCATATAACCTACCGACTGGAAACGTAGTTGCGCAGATTGCGATCGTCCGATGAAACTACAGCAacatgaagggcgACGTcactcaaatgaacagcaaaggTCAGGTCCCTGTCCAGATGAACCCAAGCAGTCAAAGACAGGAGGCCCCAGGAGGCCTTTTGGACTCGGTGATGAAAGCGGTCATCGTCATTGGATCTGGCCTCTTTGTCCTGGCAGCCTTTGGGAACTCCTTAACATGGCATCTGCAGAGGTTTTGGGGAGCATCAGGAGACTTCTGGCAAAACCAGTGGACCAAAGTACACCAGAGGTGGGAGGGACACGAGACAGCCTTGTTCTATGCCGGGGCGATGTTTGTGCCTTTTGCGGCTTTCTGGGGGTCCAATCTTCTGCTCATGCTGGTTGATTACACTGGAATGCCCAACTTCATCACCCGTTACAGAATACAGGTGGACAAGAACAACCCGGTTGACCCAGTGAAGCTGCGCCACGCGGTGAAGACGGTGGTCTTCAATCAGCTCTTCATCTCTgctcccatggtggtggtgtgcTGGGCGGTTATGTTTTCTAGTGGGAATCCCTGCGGCCCAGAGCTGCCCACCTTCCACCGAGGCCTGTTGGAGATGGCCTTCTGCGCTGTGCTGGAGGAGCTTCTGTTCTACTACTCGCACAGGCTGTTTCACCATCCTGCCCTCTACAAGCATTTCCACAAGCAGCACCATGAGTGGACGGCTCCCATCGGAGTGGTCTCTCTCTACGCCCATCCTCTGGAGCACGTGCTGTCCAACATGCTGCCTGCCCTGATCGGCCCTGTTATCCTGGGTTCCCACCTGGTCACAACCACCCTGTGGTACGCTCTGGCTCTGGTCAGCACCACCATCTCCCACTGTGGCTACCACCTCCCCTTCCTGCCCTCCCCCGAGTTCCACGACTACCACCACCTCAAGTTCAACCAGAACTTTGGAGTCCTGGGGGTTCTGGACAGGCTACACGGGACCGACGCCAACTTCAGGAAGACCAAGGCTTACGAGCGTCACACCCTGCTGCTCAGCCTCACCCCTCTGACCGAGAGCATCCCAGACCCCCCCAAGAAGGTCCAGTGATTCTACCCCGTCACTTCTGACCTCCACCTACATCCCAATAATCTCTCCTTACTCCTGTAGTGTGCACTCGTCCATACGGTTAAAATcattggattggtgtaaacaTGAGCTAGAGGAAAATCTATGATCAAGTgcacagagaaaggagagattataGAGATGCAATCAGTATTCCCATCCTCAAGTCTGGCACTGGGCTGGCTCCTCTCCCACTGTTCCTTTCTAATCTTGGTAGTCGAGACAGTGGAGTTCTTATTAAAGGTAGAGTCAGCAAAATGACGTTGCACGAGCAGCAACGCAGATGTTGTGATGAGCAAGATGCAAGACTTTGCTCTCACAGTCACACACGCTATCTGCACATGTGCACAGGCTTGCTTCACGCTCTTACAACGTGGTAGCCGCGGGACAAAAAAACGGGAGAAGTTTAGCCTCGTGCTccaacgctcttagttgttgcggaaGTTGACCCAATATGCTGTTTACTTTTGTGCATCTACATCCTATCCCTGACTCTAGCACCTCATTACACTGAAAACACATGGTGGTAATTTACTTATTTTTACCTACATGATCAGAAGACTTTTGTTTCATCTTGTTATAACGTTCCTAGCAGTAGCACTTTCTACCTTTTCAGTCTAACCTTGTTCTCCGCTGTTAAGTATAAACTTTGCAGCTTGGAGATAAGGACGGGACATACCGCTTTTTAATTATAAATACTACATTTTATAATCTGATTGTTGGACGGCACTTTATTACTGTAATTGGCACACATATTAAAGATGCAGTTCTTTGAGTGATTCCTGTGTAACTGGAGAAAAACGTACTAATATAAGGTGATTACAGTATGCTTATTGTTAGTAAGTTTGTGGATTTTGGTCTATGGAAAACCATACAATCAACTTTGTCACCATTTGTATGATCTGTATTGATTGAATGATAAATTGGTCCTTAAAGGGTTGTGCTCTGTAGAGTCTGACTCCTGGGTTGAGATTTGGGAGTCAGTATAGATTTTTACATGACCCGTAATTCATAAACTGTGCCATTGTTGCAGAATAAAACCTtaacaaaaaacaaa
>XM_036950048.1
GAAGACCGAGGGACCGCTAATTTAACTGTCTAGTACGCGCCAAACACCTGCGTGTAACACAAAGAAGGCTGCCAGAAATGTGTTATCGCTGAGAAACACTTGACTGCAAAGCCGGTCAAAACAGTGTAGCCTACAGGacatgaagggcgACGTcactcaaatgaacagcaaaggTCAGGTCCCTGTCCAGATGAACCCAAGCAGTCAAAGACAGGAGGCCCCAGGAGGCCTTTTGGACTCGGTGATGAAAGCGGTCATCGTCATTGGATCTGGCCTCTTTGTCCTGGCAGCCTTTGGGAACTCCTTAACATGGCATCTGCAGAGGTTTTGGGGAGCATCAGGAGACTTCTGGCAAAACCAGTGGACCAAAGTACACCAGAGGTGGGAGGGACACGAGACAGCCTTGTTCTATGCCGGGGCGATGTTTGTGCCTTTTGCGGCTTTCTGGGGGTCCAATCTTCTGCTCATGCTGGTTGATTACACTGGAATGCCCAACTTCATCACCCGTTACAGAATACAGGTGGACAAGAACAACCCGGTTGACCCAGTGAAGCTGCGCCACGCGGTGAAGACGGTGGTCTTCAATCAGCTCTTCATCTCTgctcccatggtggtggtgtgcTGGGCGGTTATGTTTTCTAGTGGGAATCCCTGCGGCCCAGAGCTGCCCACCTTCCACCGAGGCCTGTTGGAGATGGCCTTCTGCGCTGTGCTGGAGGAGCTTCTGTTCTACTACTCGCACAGGCTGTTTCACCATCCTGCCCTCTACAAGCATTTCCACAAGCAGCACCATGAGTGGACGGCTCCCATCGGAGTGGTCTCTCTCTACGCCCATCCTCTGGAGCACGTGCTGTCCAACATGCTGCCTGCCCTGATCGGCCCTGTTATCCTGGGTTCCCACCTGGTCACAACCACCCTGTGGTACGCTCTGGCTCTGGTCAGCACCACCATCTCCCACTGTGGCTACCACCTCCCCTTCCTGCCCTCCCCCGAGTTCCACGACTACCACCACCTCAAGTTCAACCAGAACTTTGGAGTCCTGGGGGTTCTGGACAGGCTACACGGGACCGACGCCAACTTCAGGAAGACCAAGGCTTACGAGCGTCACACCCTGCTGCTCAGCCTCACCCCTCTGACCGAGAGCATCCCAGACCCCCCCAAGAAGGTCCAGTGATTCTACCCCGTCACTTCTGACCTCCACCTACATCCCAATAATCTCTCCTTACTCCTGTAGTGTGCACTCGTCCATACGGTTAAAATcattggattggtgtaaacaTGAGCTAGAGGAAAATCTATGATCAAGTgcacagagaaaggagagattataGAGATGCAATCAGTATTCCCATCCTCAAGTCTGGCACTGGGCTGGCTCCTCTCCCACTGTTCCTTTCTAATCTTGGTAGTCGAGACAGTGGAGTTCTTATTAAAGGTAGAGTCAGCAAAATGACGTTGCACGAGCAGCAACGCAGATGTTGTGATGAGCAAGATGCAAGACTTTGCTCTCACAGTCACACACGCTATCTGCACATGTGCACAGGCTTGCTTCACGCTCTTACAACGTGGTAGCCGCGGGACAAAAAAACGGGAGAAGTTTAGCCTCGTGCTccaacgctcttagttgttgcggaaGTTGACCCAATATGCTGTTTACTTTTGTGCATCTACATCCTATCCCTGACTCTAGCACCTCATTACACTGAAAACACATGGTGGTAATTTACTTATTTTTACCTACATGATCAGAAGACTTTTGTTTCATCTTGTTATAACGTTCCTAGCAGTAGCACTTTCTACCTTTTCAGTCTAACCTTGTTCTCCGCTGTTAAGTATAAACTTTGCAGCTTGGAGATAAGGACGGGACATACCGCTTTTTAATTATAAATACTACATTTTATAATCTGATTGTTGGACGGCACTTTATTACTGTAATTGGCACACATATTAAAGATGCAGTTCTTTGAGTGATTCCTGTGTAACTGGAGAAAAACGTACTAATATAAGGTGATTACAGTATGCTTATTGTTAGTAAGTTTGTGGATTTTGGTCTATGGAAAACCATACAATCAACTTTGTCACCATTTGTATGATCTGTATTGATTGAATGATAAATTGGTCCTTAAAGGGTTGTGCTCTGTAGAGTCTGACTCCTGGGTTGAGATTTGGGAGTCAGTATAGATTTTTACATGACCCGTAATTCATAAACTGTGCCATTGTTGCAGAATAAAACCTtaacaaaaaacaaa

Function

symbol description
faxdc2 Predicted to enable C-4 methylsterol oxidase activity. Predicted to be involved in sterol biosynthetic process. Predicted to act upstream of or within lipid biosynthetic process. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human FAXDC2 (fatty acid hydroxylase domain containing 2).

NR:

description
fatty acid hydroxylase domain-containing protein 2-like

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K22282 FAXDC2; fatty acid hydroxylase domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950046.1 False 2291 mRNA 0.48 9 50460347 50470125
XM_036950048.1 True 2249 mRNA 0.49 9 50460929 50470125

Neighbor

gene id symbol gene type direction distance location
LOC110510939 faxdc2 coding upstream 26791 50424133 ~ 50433556 (+)
LOC110491046 LOC106560687 coding upstream 224121 50223738 ~ 50236226 (+)
LOC110491040 LOC106560688 coding upstream 261662 50181300 ~ 50198685 (+)
LOC110491039 LOC106560690 coding upstream 301176 50150461 ~ 50159171 (+)
LOC110491026 LOC106560691 coding upstream 359723 50098387 ~ 50100624 (+)
zgc:56585 pgdh coding downstream 105291 50575416 ~ 50580216 (+)
LOC110491108 NA coding downstream 208689 50678814 ~ 50689147 (+)
LOC110491126 LOC106602822 coding downstream 247455 50717580 ~ 50884089 (+)
LOC110491193 LOC106560681 coding downstream 490006 50960131 ~ 50972173 (+)
sat2b sat2 coding downstream 512833 50982958 ~ 51008552 (+)
G154514 NA non-coding upstream 7784 50416268 ~ 50452563 (+)
G154487 NA non-coding upstream 13344 50380336 ~ 50447003 (+)
G154517 NA non-coding upstream 15794 50442005 ~ 50444553 (+)
G154431 NA non-coding upstream 63105 50304873 ~ 50397242 (+)
G154204 NA non-coding upstream 194188 50265935 ~ 50266159 (+)
G154524 NA non-coding downstream 7763 50477888 ~ 50479523 (+)
G154525 NA non-coding downstream 8315 50478440 ~ 50488294 (+)
G154526 NA non-coding downstream 8587 50478712 ~ 50480108 (+)
G154527 NA non-coding downstream 8655 50478780 ~ 50487600 (+)
G154548 NA non-coding downstream 39156 50509281 ~ 50509791 (+)
G152167 NA other upstream 1902661 48556782 ~ 48557686 (+)
G150997 NA other upstream 2912768 47497948 ~ 47547579 (+)
uevld uevld other upstream 3475121 46981686 ~ 47007672 (+)
G148191 NA other upstream 4967968 45472082 ~ 45492379 (+)
G154859 NA other downstream 695290 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 851671 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 942141 51412121 ~ 51417154 (+)
G155541 NA other downstream 950722 51420847 ~ 51421122 (+)
G156000 LOC106560791 other downstream 1346385 51816510 ~ 51824182 (+)

Expression


Co-expression Network