zgc:56585 (pgdh)


Basic Information

Item Value
gene id zgc:56585
gene name pgdh
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50575416 ~ 50580216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564446.2
GCGCGTGCGCAATTCTTACAACCAACGATCCGACGTCATTGAATGATGTTGATCGTCAAATCAGTTCTGACATGGACTCAGCGCTGACTTTAGAACGTTTCTCCGCGACGTCAAAAGTCTTGTTCTTGTGTGAGTTTGAAGAAGTTTGCTACCGCGTCTTCTCTGCTTATCAGGCTACCTTGTTTCAGTGATGGCGTTACATGGCAAAGTGGCTTTAGTGACTGGTGCGGTGCAAGGTTTGGGTAAAGGTTTCTCAGAAATTCTTTTGCAAAAAGGAGCAAAGGTAGCCCTGTTGGATATAAATGAGTCAGGGGGGAAGGATTTGAAGGCTGCCTTTGATAAAGAATATGGACCAGACAGAACACTGTTTCTTACCTGCACCGTTGAATCTGAGGAACAACTAAAAGATGCCTTTCAGAAAACGGTAGAGGCGTTTGGGGGCTTAGACATCGTCTGCAACAACGCTGGTATCATCGATGAGACGAACTGGGAGAAATGTGTGTCTATAAACCTCAATGGAGTGGTGAGAGGCACATATCTGGCTCTCCAGCACATGAAAAAGCAGAACAGAGGGCAGGGAGGCGTCATCATCAACATAGCGTCTATGGCAGGTCTGGGTCCTCTGCTGACTGCTCCCATCTACACAGCCACCAAACACGGGGTGGTGGGGTTCAGTCGGGCTATGGCGGATGTCTCCCGTTTGTGTGACTACGGGGTGCGAATTAATGTCCTCTGCCCTGCTTTCGTCCAAACCGCCATCCTCTCCTCCAtgagttcagaggagactgcgggaCAGTTCGCAGGTCTGAGGGGAGTGGCAGAGAAACTACTGGAACAGTTTGGTGTGCTTGAAGTCTCTGAGGTAGCCAAGAACTTCTTGAAGCTGGTGACGGATGAGAGTCGAAACGGAGAGGCCCTTTTGGTACGGAAGGAGGGAGCTTCATACGTAACGTTTCGCCAAGAGGCTTCCCAGCTGCCCAGTATCCTTGCCCCCTCTCTGTAGCAGAATCCCTCCCCCAGCAAGCTGGTATGTCTGCACACTAACAGAAGGCCTGGACCTGTGTGTTCCGGTCCTGTTGCTTGTATAAAATAACTTGTGTAAACAACATGATTGTATTATCACCTCCCACTATATAAGGGACATGTAACCATTTACTCTTCGACTTCTTACCTGTGAAATCAGAGATCTCATTCTTGCAGCTGCATGATTAAAGATTTTTCTATTATACAATTAAA
>XM_021564453.2
GCGCGTGCGCAATTCTTACAACCAACGATCCGACGTCATTGAATGATGTTGATCGTCAAATCAGTTCTGACATGGACTCAGCGCTGACTTTAGAACGTTTCTCCGCGACGTCAAAAGTCTTGTTCTTGTGTGAGTTTGAAGAAGTTTGCTACCGCGTCTTCTCTGCTTATCAGGCTACCTTGTTTCAGTGATGGCGTTACATGGCAAAGTGGCTTTAGTGACTGGTGCGGTGCAAGGTTTGGGTAAAGGTTTCTCAGAAATTCTTTTGCAAAAAGGAGCAAAGGTAGCCCTGTTGGATATAAATGAGTCAGGGGGGAAGGATTTGAAGGCTGCCTTTGATAAAGAATATGGACCAGACAGAACACTGTTTCTTACCTGCACCGTTGAATCTGAGGAACAACTAAAAGATGCCTTTCAGAAAACGGTAGAGGCGTTTGGGGGCTTAGACATCGTCTGCAACAACGCTGGTATCATCGATGAGACGAACTGGGAGAAATGTGTGTCTATAAACCTCAATGGAGTGGTGAGAGGCACATATCTGGCTCTCCAGCACATGAAAAAGCAGAACAGAGGGCAGGGAGGCGTCATCATCAACATAGCGTCTATGGCAGGTCTGGGTCCTCTGCTGACTGCTCCCATCTACACAGCCACCAAACACGGGGTGGTGGGGTTCAGTCGGGCTATGGCGGATGTCTCCCGTTTGTGTGACTACGGGGTGCGAATTAATGTCCTCTGCCCTGCTTTCGTCCAAACCGCCATCCTCTCCTCCAtgagttcagaggagactgcgggaCAGTTCGCAGGTCTGAGGGGAGTGGCAGAGAAACTACTGGAACAGTTTGGTGTGCTTGAAGTCTCTGAGGTAGCCAAGAACTTCTTGAAGCTGGTGACGGATGAGAGTCGAAACGGAGAGGCCCTTTTGGTACGGAAGGAGGGAGCTTCATACGTAACGTTTCGCCAAGAGGCTTCCCAGCTGCCCAGTATCCTTGCCCCCTCTCTGTAGCAGAATCCCTCCCCCAGCAAGCTGACATCCCTCTGACCACAAAAGCCccaagcatcccggagtcgcctcctcactgttgacgttgagactggtgttttgcagggactatttaatgatgctgccagttgaggacttgtgatgcatctgtttctcaaactagacactaatgttcttgtcctcttgctcagttgtgcactggggcctcccactttCTATTCTGGTAAGAGCccatttgcgctgttctgtgaagggagtagtacacagcgttgtaccagatcttcagtttcttggcaatttctcacatggaataaccttcatttctcagaacaagaatagactggtgagtttcagaagaaaggcctttgtttctggccattttgagcctgtaaatgaacccacaaatgctgatgctccagatactcaactagtctaaagatggccagttttattgcatctttgatcagaacaacagt

Function

NR:

description
15-hydroxyprostaglandin dehydrogenase [NAD(+)]-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564446.2 False 1236 mRNA 0.48 7 50575416 50579663
XM_021564453.2 True 1476 mRNA 0.49 8 50575416 50580216

Neighbor

gene id symbol gene type direction distance location
LOC110515922 faxdc2 coding upstream 105291 50460347 ~ 50470125 (+)
LOC110510939 faxdc2 coding upstream 141860 50424133 ~ 50433556 (+)
LOC110491046 LOC106560687 coding upstream 339190 50223738 ~ 50236226 (+)
LOC110491040 LOC106560688 coding upstream 376731 50181300 ~ 50198685 (+)
LOC110491039 LOC106560690 coding upstream 416245 50150461 ~ 50159171 (+)
LOC110491108 NA coding downstream 98598 50678814 ~ 50689147 (+)
LOC110491126 LOC106602822 coding downstream 137364 50717580 ~ 50884089 (+)
LOC110491193 LOC106560681 coding downstream 379915 50960131 ~ 50972173 (+)
sat2b sat2 coding downstream 402742 50982958 ~ 51008552 (+)
LOC110491259 LOC106560678 coding downstream 487275 51067491 ~ 51087131 (+)
G154584 NA non-coding upstream 6661 50568324 ~ 50568755 (+)
G154583 NA non-coding upstream 7431 50567677 ~ 50567985 (+)
G154582 NA non-coding upstream 8297 50566823 ~ 50567119 (+)
G154580 LOC108238713 non-coding upstream 11231 50563883 ~ 50564185 (+)
G154579 NA non-coding upstream 12427 50562705 ~ 50562989 (+)
G154593 NA non-coding downstream 5317 50585533 ~ 50586189 (+)
G154594 NA non-coding downstream 7058 50587274 ~ 50587589 (+)
G154592 NA non-coding downstream 8213 50588429 ~ 50588723 (+)
G154591 NA non-coding downstream 19502 50599718 ~ 50600151 (+)
G154662 NA non-coding downstream 152689 50732905 ~ 50733216 (+)
LOC110491026 LOC106560691 other upstream 474942 50098387 ~ 50100624 (+)
G152167 NA other upstream 2017730 48556782 ~ 48557686 (+)
G150997 NA other upstream 3027837 47497948 ~ 47547579 (+)
uevld uevld other upstream 3590190 46981686 ~ 47007672 (+)
G148191 NA other upstream 5083037 45472082 ~ 45492379 (+)
G154859 NA other downstream 585199 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 741580 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 832050 51412121 ~ 51417154 (+)
G155541 NA other downstream 840631 51420847 ~ 51421122 (+)
G156000 LOC106560791 other downstream 1236294 51816510 ~ 51824182 (+)

Expression


Co-expression Network