rbm41 (rbm41)


Basic Information

Item Value
gene id rbm41
gene name rbm41
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50665296 ~ 50678813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564460.2
ACAGAAAAAAGAATGGGGAAGAAACATTTCCGGGTTTTACCGCTAGGTTTTCTGGGTATTATGACTCCTACCAGTAGGCTGTAATCTGCCATTAAACCTCAGAAGAACACGGAGATATGCGACGtatgACTCGTCATGCGTGTGAGGACGGCCCAGTCTtggaggaacaggagacagagggacagagacagctcCACAGTCTCCTCCTACAGCAGTTAGACACAGATGTCAACATAGACAGATGTGTTGCCAAGAGGAAGTGTTTTGCCCCTGCTGCGCTGTACAAGCCATTTGGGGAGCAGGCTGCCGGGGTGAGGAGTCTATCCCAGTTCCAGGCTCTACAGGACGGGGAGAGTGAGCTGGCCAGTCTCAGGGAGCTGGGGCTCACAGACCTGGAGGTAGAACTGTGGCTCAACAGAGACCAGCCAGAGAACACTGAGAAGGGCCATGGGGTGTGTGTGGCCCCCGGGGTGCGGCAACAGCGTCTTCTGGTGATCCAGGACAAGATGGATGCCAGGTTAGAGCTAATTTCCCGCCCACAGCGCTTCTCTGCCAGCCTACCCCTGTCCcgcagagagatggagatagagaaggCCCTGTTCCAGGGCAATGACCGCCTGGGCTTCCTCACTGCACTCTATCATCAAGAGGAAGATACCCAAGCTGACCAGCAGGGGGCATCTTCCTCAAACCCCCTGGACTCCCTGTACAGAGATGTCCTAAGTGATAGGCGAAAACACACGTCTGTGTCTGTATCAGAGGACTCTGAGCTGAAAACCACAGGACACTTATCTCTACCTCAGCCTGAACCACAAACTGACTTTGAGAAATCACAGAGCTCATGGAAAAGCACTGACCAATCGCAAGTCCAGCTTGACTGTAGATCTGATCCATTGAGAAGTGGGATCAGGGACTCTGACCAATCAACTACAATGGACACTTCTGGCCTATCACAAGATCAGGACAGATCTGTACACAAGCAATTGTCAGCTCCAAAGAAGATAAATGTGAGCCAGCCAATTGGGAGTCTGTGTAGTGTGGCAAAGGCGGGGCCTTGGGGTCCGGTGATGGTGCGGGGCAAGGTAGAGGAGGTTCCAGAGGAAGAGATTCAGCAGAACCGGGAAACAGAGCAAGGGATCCGGAGCATACCACGGTTCCACAACTACCAGCCAGGGAAACCATCAAAGGTGCTGTGTGTGAAGAACCTGAGTGCCCGTGCCTCTGTGGCACAGCTGGTGGCGCTATTCTCCAGGTTTGATTGTGACATCACCCAGCCTGTTGTCTACCGCCTACTCACTGGCAGACTGAAGGGACACGCCTTCATCACACTATCAGACACCGAAACGTCCCAGAGAGCCTTGGAGATGGTGAATGGGTACCGGTTGCTAGGGAAACCTTTGGTGATCGAGTTTGGTCTAGAGCGGAGGGATGAGAAGAAACCAAAAACGGAACGGGAAGAGGAGAAAACGAGAGAATGTAGTGTACCATCTCTACCTAACCCCAGTACTACAGACACTAAATACTACGACAGGACTTCAACACACAaataagagagagaaacagaccgaCCACATACATATATGTGTTCAAAGGAGGAGAGTGACTCTTCAATGACTGAGGTTTGACATTTCTGCTCCTTGTACCATTTGTTGTGTGAAGGTCGATGAACGTGGATTAATTTGTATTTTTGTCCTGGATGTTAAGTGTTTTTTTTGTATGATCATAGGCTGTGTTTGGAATGTGAAGTATTAAAAATCTGTTCTCTGTTGCA

Function

symbol description
rbm41 Predicted to enable U12 snRNA binding activity and pre-mRNA intronic binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U12-type spliceosomal complex. Orthologous to human RBM41 (RNA binding motif protein 41).

NR:

description
RNA-binding protein 41

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564460.2 True 1771 mRNA 0.51 7 50665296 50678813

Neighbor

gene id symbol gene type direction distance location
LOC110491068 larp1 coding downstream 103989 50474632 ~ 50561307 (-)
LOC110491057 LOC100136935 coding downstream 377569 50272218 ~ 50287727 (-)
LOC118937274 NA coding downstream 534313 50129515 ~ 50131269 (-)
plscr3a LOC106560726 coding downstream 537893 50124561 ~ 50127403 (-)
LOC110490984 LOC106560693 coding downstream 627404 49962896 ~ 50037892 (-)
LOC110491182 LOC106602821 coding upstream 227823 50906636 ~ 50954275 (-)
LOC110491226 NA coding upstream 305319 50984132 ~ 50984985 (-)
LOC110491241 LOC106560679 coding upstream 363124 51039870 ~ 51050197 (-)
LOC110491276 LOC106560676 coding upstream 501957 51180770 ~ 51229329 (-)
lingo1a LOC106560791 coding upstream 1143478 51822291 ~ 52089547 (-)
G155083 NA non-coding downstream 60892 50604189 ~ 50604404 (-)
G155082 NA non-coding downstream 61576 50603206 ~ 50603720 (-)
G155081 NA non-coding downstream 62307 50602590 ~ 50602989 (-)
G155080 NA non-coding downstream 62870 50602113 ~ 50602426 (-)
G155079 NA non-coding downstream 63244 50601839 ~ 50602052 (-)
G155122 NA non-coding upstream 4547 50683360 ~ 50684713 (-)
G155160 NA non-coding upstream 51857 50730670 ~ 50730937 (-)
G155161 NA non-coding upstream 54091 50732904 ~ 50733219 (-)
G155162 NA non-coding upstream 54471 50733284 ~ 50733486 (-)
G155181 NA non-coding upstream 125424 50804237 ~ 50805476 (-)
G155072 NA other downstream 83947 50579798 ~ 50581349 (-)
G155003 NA other downstream 213149 50415743 ~ 50452147 (-)
G154338 NA other downstream 507471 50156686 ~ 50157825 (-)
G154300 NA other downstream 557849 50101430 ~ 50107447 (-)
G152024 NA other downstream 2361633 48303311 ~ 48303663 (-)
G155281 LOC106560681 other upstream 292263 50971076 ~ 50971935 (-)
G155610 NA other upstream 733456 51412269 ~ 51417110 (-)
snx33 snx33 other upstream 2354089 53032902 ~ 53112547 (-)
G159120 NA other upstream 3177873 53856686 ~ 53857552 (-)

Expression


Co-expression Network