LOC110491182 (LOC106602821)


Basic Information

Item Value
gene id LOC110491182
gene name LOC106602821
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50906636 ~ 50954275 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564533.2
TATGAGCCAGAGGGAGGCATTTGGAATTACCGGGCGTTCCTGGATCCGATAAAGACGCGCTTATCACGCAGCAGTTGTCAAATCTATATGTACTTTACATAAGTTATATTTATAAATAAAGAGCTATTTGAATACGTTTTATCCAGGAGATAGTTATGGAAACTAGTATAGGACAGGCCATGAATCCGGCACACACAGAAGAGAGCACGGTTTTCACGCAACCTGTGCGGCTGTCTGGAGCGGACGGCGCAGATGACTCGTCCGTTTTTGAAGAAGTGAAACCCCGGGTGAGAATTAGTCGACATCTTAACCCGGTGGAGGtagctgacacCCAGTTGGAGATGGAAAAGTTCCTCCCCCAGACCACAAGCagtctcctccatcctccatccatgGCCCACACAGACAAGAAGAACTGCGGAGAGAGCGCCTCATTGGTGGACAAGTACTTCTCAGAGGAGAAGCACAACACAGCTCCCTACAGCATCAACATCAACCTCATCCTCCCCAACACCACCCACCTCTGCACCGGCCTGAACCGGCCCAACAAGCCCCAGCAGCACCACCTGACCCATCTCCTCCCGCACATCAAGACAGAGCCTCGGTTGGACGTCCCAGTGTCCTGCTCCATCCAGACCCTGCCTGACTTCATGTCTGTCTTCAGCATTCCCCAGACCGTCAACACTATGTTTATCAAACCCGATATGGCCACCAGCGGACACCCAGTTTCAGATACCGAGCTGCATATTGGCCCCCAACAACTGCAGGTCTACCAGATGCCCATCCCCGTCAGCGGAGCTGACCTCACAATGACACTCTCCCGCAGCAACCAATCAGGGACCAGCGGAGCCGGCAACGGTAGAACCATGCTCAACCTGAACAGTGTCTCCTTGACAACGGTGGGTCATGGCGGTGGTGACTCGTTGTTTGCAATGCCGGAGCATTTCTACCACCACCACGCCAAGGTGTCGCCCCAGTCACAGCCCCACAGCCTACCTCCCTCACCCCCCAACTCGCAGCCGGGTAGTCCTGAGAACCAGGCTGAGCTGCTGACCACTCCACCGCCCTTCCAGGCCTCTAGCAGACTGGGGTTAAAGGTCACTCAGATGTCCCACCACTCCATGCGTATGGCCCACGGACAATGGGTGCTGACAGGACCCAGGTACAACCGACGGAACAACCCTGAGCTCGAGAAGAGACGGATCCACTTCTGTGACTTTCCTGGCTGCTCAAAGGTTTACACAAAGAGCTCTCACTTGAAAGCACAccaaaggacacacacaggagagAAACCATACTCTTGCAACTGGGAGGGCTGTGACTGGCGTTTCGCCCGCTCTGACGAGCTGACACGACACTATCGTAAACACACGGGAGCCAAGCCCTTCAAGTGTGTAGCCTGCAGGCGCTGTTTCTCCCGGTCCGATCACCTTGCCCTACACATGAAGCGCCACCAGAACTAAACTCACGCGCACGCTACGACCACCTGAAATGTCACCAGAACTAAACACGCACACATACGTACATGCACGTGAGCATGTGCACCGGCATAAACACCCAACCACCaacacatccacccacacacatgcTACGACCACCTGAAGCGTCACCAGAAGAGAGGGACACATGACCACCATCCTGAAGCCCCAGAATGCATTGCACTGCATGAGGGCCAACACAAAGATCAAAATGTCTGCTCCTCCTTTCAAAGAAATAGGGGACCATGGACACCTGCCTCCAATTGCTCCATGTATTAATGCATGCACATtgtatacctgtctgtctgtatatacagttgaagttggaagtttacatacacttaggtcgtttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtcggttaggacatcta
>XM_036950164.1
TATGAGCCAGAGGGAGGCATTTGGAATTACCGGGCGTTCCTGGATCCGATAAAGACGCGCTTATCACGCAGCAGTTGTCAAATCTATATGTACTTTACATAAGTTATATTTATAAATAAAGAGCTATTTGAATACGTTTTATCCAGGAGATAGTTATGGAAACTAGTATAGGACAGGCCATGAATCCGGCACACACAGAAGAGAGCACGGTTTTCACGCAACCTGTGCGGCTGTCTGGAGCGGACGGCGCAGATGACTCGTCCGTTTTTGAAGAAGTGAAACCCCGGacCCAGTTGGAGATGGAAAAGTTCCTCCCCCAGACCACAAGCagtctcctccatcctccatccatgGCCCACACAGACAAGAAGAACTGCGGAGAGAGCGCCTCATTGGTGGACAAGTACTTCTCAGAGGAGAAGCACAACACAGCTCCCTACAGCATCAACATCAACCTCATCCTCCCCAACACCACCCACCTCTGCACCGGCCTGAACCGGCCCAACAAGCCCCAGCAGCACCACCTGACCCATCTCCTCCCGCACATCAAGACAGAGCCTCGGTTGGACGTCCCAGTGTCCTGCTCCATCCAGACCCTGCCTGACTTCATGTCTGTCTTCAGCATTCCCCAGACCGTCAACACTATGTTTATCAAACCCGATATGGCCACCAGCGGACACCCAGTTTCAGATACCGAGCTGCATATTGGCCCCCAACAACTGCAGGTCTACCAGATGCCCATCCCCGTCAGCGGAGCTGACCTCACAATGACACTCTCCCGCAGCAACCAATCAGGGACCAGCGGAGCCGGCAACGGTAGAACCATGCTCAACCTGAACAGTGTCTCCTTGACAACGGTGGGTCATGGCGGTGGTGACTCGTTGTTTGCAATGCCGGAGCATTTCTACCACCACCACGCCAAGGTGTCGCCCCAGTCACAGCCCCACAGCCTACCTCCCTCACCCCCCAACTCGCAGCCGGGTAGTCCTGAGAACCAGGCTGAGCTGCTGACCACTCCACCGCCCTTCCAGGCCTCTAGCAGACTGGGGTTAAAGGTCACTCAGATGTCCCACCACTCCATGCGTATGGCCCACGGACAATGGGTGCTGACAGGACCCAGGTACAACCGACGGAACAACCCTGAGCTCGAGAAGAGACGGATCCACTTCTGTGACTTTCCTGGCTGCTCAAAGGTTTACACAAAGAGCTCTCACTTGAAAGCACAccaaaggacacacacaggagagAAACCATACTCTTGCAACTGGGAGGGCTGTGACTGGCGTTTCGCCCGCTCTGACGAGCTGACACGACACTATCGTAAACACACGGGAGCCAAGCCCTTCAAGTGTGTAGCCTGCAGGCGCTGTTTCTCCCGGTCCGATCACCTTGCCCTACACATGAAGCGCCACCAGAACTAAACTCACGCGCACGCTACGACCACCTGAAATGTCACCAGAACTAAACACGCACACATACGTACATGCACGTGAGCATGTGCACCGGCATAAACACCCAACCACCaacacatccacccacacacatgcTACGACCACCTGAAGCGTCACCAGAAGAGAGGGACACATGACCACCATCCTGAAGCCCCAGAATGCATTGCACTGCATGAGGGCCAACACAAAGATCAAAATGTCTGCTCCTCCTTTCAAAGAAATAGGGGACCATGGACACCTGCCTCCAATTGCTCCATGTATTAATGCATGCACATtgtatacctgtctgtctgtatatacagttgaagttggaagtttacatacacttaggtcgtttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtcggttaggacatcta

Function

NR:

description
Krueppel-like factor 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564533.2 False 1894 mRNA 0.53 5 50906636 50954275
XM_036950164.1 True 1852 mRNA 0.53 4 50906636 50954275

Neighbor

gene id symbol gene type direction distance location
rbm41 rbm41 coding downstream 227823 50665296 ~ 50678813 (-)
LOC110491068 larp1 coding downstream 345329 50474632 ~ 50561307 (-)
LOC110491057 LOC100136935 coding downstream 618909 50272218 ~ 50287727 (-)
LOC118937274 NA coding downstream 775653 50129515 ~ 50131269 (-)
plscr3a LOC106560726 coding downstream 779233 50124561 ~ 50127403 (-)
LOC110491226 NA coding upstream 29857 50984132 ~ 50984985 (-)
LOC110491241 LOC106560679 coding upstream 87662 51039870 ~ 51050197 (-)
LOC110491276 LOC106560676 coding upstream 226495 51180770 ~ 51229329 (-)
lingo1a LOC106560791 coding upstream 868016 51822291 ~ 52089547 (-)
LOC118937283 NA coding upstream 1825321 52779596 ~ 52780459 (-)
G155218 NA non-coding downstream 57402 50848261 ~ 50849234 (-)
G155214 NA non-coding downstream 66406 50838715 ~ 50840230 (-)
G155181 NA non-coding downstream 101160 50804237 ~ 50805476 (-)
G155162 NA non-coding downstream 173150 50733284 ~ 50733486 (-)
G155161 NA non-coding downstream 173417 50732904 ~ 50733219 (-)
G155286 NA non-coding upstream 18719 50972994 ~ 50973216 (-)
G155287 NA non-coding upstream 19121 50973396 ~ 50973684 (-)
G155288 NA non-coding upstream 19483 50973758 ~ 50974269 (-)
G155290 NA non-coding upstream 24727 50979002 ~ 50979405 (-)
G155291 NA non-coding upstream 25402 50979677 ~ 50980061 (-)
G155072 NA other downstream 325287 50579798 ~ 50581349 (-)
G155003 NA other downstream 454489 50415743 ~ 50452147 (-)
G154338 NA other downstream 748811 50156686 ~ 50157825 (-)
G154300 NA other downstream 799189 50101430 ~ 50107447 (-)
G152024 NA other downstream 2602973 48303311 ~ 48303663 (-)
G155281 LOC106560681 other upstream 16801 50971076 ~ 50971935 (-)
G155610 NA other upstream 457994 51412269 ~ 51417110 (-)
snx33 snx33 other upstream 2078627 53032902 ~ 53112547 (-)
G159120 NA other upstream 2902411 53856686 ~ 53857552 (-)

Expression


Co-expression Network