LOC110491241 (LOC106560679)


Basic Information

Item Value
gene id LOC110491241
gene name LOC106560679
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51039870 ~ 51050197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564589.2
acctcgggctcgaaggtcgagggttcgagatcTGCtacctgctgtttcattacaatacttTTCATTCTTGAACATTTACGggattattttattttcatacaCTGGCCTCAATTTGCCAGTCTGTTATTGACATTGAAAACGATTTTTCACCTTTCTGAAAAGATGTCGACATCGAGATTAAGTGGGGAAAAAAATAACAGAGTAGTTTATGAttcatgcctagttaaataaaggtttatagatatataataataataataataaattaggCAGCTCTGCAGCTATTTCTGTTCAGGCAGATCATAGGGCAGCCGCACTTGAAGGGTCCTTCTTGCTGGAGGTGACATTCAGTTGCAGCAAATAGCCTATAGCGTATTTTTCACGACTCTAAAGCAAACCACCATGGCACAGGCAGTCCAGAAATTGGTGGCCAAAGTACCTACTTTGATCGGAGCCGCTGCCACCTACTCCAAGCCCCGGCTAGCGACCTTCTGGCACTACGCTAAAGTCGAGCTTGTGCCACCTTCCCCTGCCGAGATTCCCCAGGCCATTGCAGGAATCAAGAACATCCTCACCGGTGTCAACAGTGGACGCCTTGGACAGACGACAGTGAAGGATGCATTCAGAAATGGATTGGTCTGCACTGAAGTGCTGATGTGGTTCTACATTGGAGAGTGCATCGGAAAAGGAGGCATTGTTGGATATGCCGTTTAAACCTTGTTCTGTTGCTGTTGTACGCTCTTACCTTCCACCTGTGAAGATCAGTTAATAAATGTCCATTGTTTAAAGAACTGTTGTACTCTTACCTTCCACCTGTGGAGATCAGTTAATAAATGTCCATTGTTTAAAGAACTGTTGTACTCTTACCTTCCACCTGTGGAGATCAGTTAATAAATGTCCATTGTTTAAAGAACTGTTGTACTCTTACCTTCCACCTGTGGAGATCAGTTAATAAATGTCCATTGTTTAAAGAACTGTTGTACTCTTACCTTCCACCTGTGGAGATCAGTTAATAAATGTCCAttgtttaa
>XM_036950227.1
acctcgggctcgaaggtcgagggttcgagatcTGCtacctgctgtttcattacaatacttTTCATTCTTGAACATTTACGggattattttattttcatacaCTGGCCTCAATTTGCCAGTCTGTTATTGACATTGAAAACGATTTTTCACCTTTCTGAAAAGATGTCGACATCGAGATTAAGTGGGGAAAAAAATAACAGAGTAGTTTATGAttcatgcctagttaaataaaggtttatagatatataataataataataataaattaggCAGCTCTGCAGCTATTTCTGTTCAGGCAGATCATAGGGCAGCCGCACTTGAAGGGTCCTTCTTGCTGGAGGTGACATTCAGTTGCAGCAAATAGCCTATAGCGTATTTTTCACGACTCTAAAGCAAACCACCATGGCACAGGCAGTCCAGAAATTGGTGGCCAAAGTACCTACTTTGATCGGAGCCGCTGCCACCTACTCCAAGCCCCGGCTAGCGACCTTCTGGCACTACGCTAAAGTCGAGCTTGTGCCACCTTCCCCTGCCGAGATTCCCCAGGCCATTGCAGGAATCAAGAACATCCTCACCGGTGTCAACAGTGGACGCCTTGGACAGACGACAGTGAAGGATGCATTCAGAAATGGATTGGTCTGCACTGAAGTGCTGATGTGGTTCTACATTGGAGAGTGCATCGGAAAAGGAGGCATTGTTGGATATGCCGTTTAAACCTTGTTCTGTTGCTGTTGTACGCTCTTACCTTCCACCTGTGAAGATCAGTTAATAAATGTCCATTGTTTAAAGAACTGTTGTACTCTTACCTTCCACCTGTGGAGATCAGTTAATAAATGTCCATTGTTTAAAGAACTGTTGTACTCTTACCTTCCACCTGTGGAGATCAGTTAATAAATGTCCATTGTTTAAAGAA
>TU177680
TTGAAGGGTCCTTCTTGCTGGAGGTGACATTCAGTTGCAGCAAATAGCCTATAGCGTATTTTTCACGACTCTAAAGCAAACCACCATGGCACAGGCAGTCCAGAAATTGGTGGCCAAAGTACCTACTTTGATCGGAGCCGCTGCCACCTACTCCAAGCCCCGGCTAGCGACCTTCTGGCACTACGCTAAAGTCGAGCTTGTGCCACCTTCCCCTGCCGAGATTCCCCAGGCCATTGCAGGAATCAAGAACATCCTCACCGGTGTCAACAGTGGACGCCTTGGACAGACGACAGTGAAGGATGCATTCAGAAATGGATTGGTCTGCACTGAAGTGCTGATGTGGTTCTACATTGGAGAGTGCATCGGAAAAGGAGGCATTGTTGGATATGCCGTTTAAACCTTGTTCTGTTGCTGTTGTACGCTCTTACCTTCCACCTGTGAAGATCAGTTAATAAATGTCCATTGTTTAAAGAACTGTTGTACTCTTACCTTCCACCTGTGGAGATCAGTTAATAAATGTCCATTGTTTAAAGAACTGTTGTACTCTTACCTTCCACCTGTGGAGATCAGTTAATAAATGTCCATTGTTTAAAGAACTGTTGTACTCTTACCTTCCACCTGTGGAGATCAGTTAATAAATGTCCAttgtttAAAGAACTGTTGTACTCTTTTCTTCCACCTGTGGAGATCAGTTAATAAATGTCCATTGTTTAAAGAACTGTTG
>TU177681
TTGAAGGGTCCTTCTTGCTGGAGGTGACATTCAGTTGCAGCAAATAGCCTATAGCGTATTTTTCACGACTCTAAAGCAAACCACCATGGCACAGGCAGTCCAGAAATTGGTGGCCAAAGTACCTACTTTGATCGGAGCCGCTGCCACCTACTCCAAGCCCCGGCTAGCGACCTTCTGGCACTACGCTAAAGTCGAGCTTGTGCCACCTTCCCCTGCCGAGATTCCCCAGGCCATTGCAGGAATCAAGAACATCCTCACCGGTGTCAACAGTGGACGCCTTGGACAGACGACAGTGAAGGATGCATTCAGAAATGGATTGGTCTGCACTGAAGTGCTGATGTGGTTCTACATTGGAGAGTGCATCGGAAAAGGAGGCATTGTTGGATATGCCGTTTAAACCTTGTTCTGTTGCTGTTGTACGCTCTTACCTTCCACCTGTGAAGATCAGTTAATAAATGTCCATTGTTTAAAGAACTGTTGTACTCTTACCTTCCACCTGTGGAGATCAGTTAATAAATGTCCATTGTTTAAAGAACTGTTGTACTCTTACCTTCCACCTGTGGAGATCAGTTAATAAATGTCCAttgtttAAAGAACTGTTGTACTCTTTTCTTCCACCTGTGGAGATCAGTTAATAAATGTCCATTGTTTAAAGAACTGTTG

Function

NR:

description
PREDICTED: ATP synthase subunit g, mitochondrial-like

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564589.2 False 1031 mRNA 0.42 3 51041937 51050197
XM_036950227.1 False 913 mRNA 0.43 4 51041994 51050197
TU177680 False 724 TUCP 0.58 5 51039870 51049880
TU177681 True 663 TUCP 0.38 5 51039870 51049880

Neighbor

gene id symbol gene type direction distance location
LOC110491226 NA coding downstream 56952 50984132 ~ 50984985 (-)
LOC110491182 LOC106602821 coding downstream 87662 50906636 ~ 50954275 (-)
rbm41 rbm41 coding downstream 363124 50665296 ~ 50678813 (-)
LOC110491068 larp1 coding downstream 480630 50474632 ~ 50561307 (-)
LOC110491057 LOC100136935 coding downstream 754210 50272218 ~ 50287727 (-)
LOC110491276 LOC106560676 coding upstream 130573 51180770 ~ 51229329 (-)
lingo1a LOC106560791 coding upstream 772094 51822291 ~ 52089547 (-)
LOC118937283 NA coding upstream 1729399 52779596 ~ 52780459 (-)
snx33 snx33 coding upstream 2023096 53032902 ~ 53112547 (-)
LOC118940482 NA coding upstream 2132401 53182598 ~ 53188868 (-)
G155309 NA non-coding downstream 29425 51012273 ~ 51012512 (-)
G155308 NA non-coding downstream 29768 51011582 ~ 51012169 (-)
G155307 NA non-coding downstream 30450 51011277 ~ 51011487 (-)
G155306 NA non-coding downstream 32017 51009607 ~ 51009920 (-)
G155292 NA non-coding downstream 60741 50980119 ~ 50981196 (-)
G155352 NA non-coding upstream 14693 51064890 ~ 51066126 (-)
G155353 NA non-coding upstream 16536 51066733 ~ 51067199 (-)
G155364 NA non-coding upstream 39561 51089758 ~ 51089967 (-)
G155366 NA non-coding upstream 41523 51091720 ~ 51091922 (-)
G155370 NA non-coding upstream 43908 51094105 ~ 51094460 (-)
G155281 LOC106560681 other downstream 70002 50971076 ~ 50971935 (-)
G155072 NA other downstream 460588 50579798 ~ 50581349 (-)
G155003 NA other downstream 589790 50415743 ~ 50452147 (-)
G154338 NA other downstream 884112 50156686 ~ 50157825 (-)
G154300 NA other downstream 934490 50101430 ~ 50107447 (-)
G155610 NA other upstream 362072 51412269 ~ 51417110 (-)
G159120 NA other upstream 2806489 53856686 ~ 53857552 (-)
cd59 cd59-2 other upstream 2919246 53969443 ~ 53971367 (-)
ambra1b LOC106560763 other upstream 3207229 54213602 ~ 54268394 (-)

Expression


Co-expression Network