LOC110491259 (LOC106560678)


Basic Information

Item Value
gene id LOC110491259
gene name LOC106560678
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51067491 ~ 51087131 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950237.1
TAAACGGGGCATTAGTTCCTGTTTCGAAACCGGTCGCTCGCATCATGGCCGCAGTACGCAGCCTACGGGTTTCGGTGAAGTCAGACTGCTCAGAGTCGGATTCAGACCGAGATGCCCGCGAAGTTGAAccgatggaggtggaggagggcgaACTCGAGGCAGAGGACATCCCCGTTAACCGGTCCTTGAATGAAGTGCTGCCGGAGGCGATTCAGAGGACGGAGAAGAGCACAGAAAGTTTCCACTTCTGTGCACAGGCCAACCCAGGCCAGATTGTGGTACTAGACAGAGACACCATGAAGaaagccaTCCCTAACTTGCGCCTGGAGGCGTTGCATGTGGCGGGTGTGGATGATATGAGCACCCAGGATGTGTTTGGCTACTTTAAGGAGTACCCTCCAGCACACATTGAGTGGATCGACGACACCTCCTGTAACGTGGTGTGGCTGGATGATGTCACTTCCACCCGGGCTCTGATCAACATCAGCCACGTGCCTGACCCAGAGGTGGTTACCAAAGAGACAGGCGACACCAAAGAACTTGGTGATCCCACCCAGGAGAGCAAGGCTCGAGGGCAATCCAATtccgatgatgatgatgatgatgatgatgatgatggagaggtggaggaggagcaaAAAGAGCCGGTGAAAGAGAACCGTGAGGAGAGTGAGGGAAAAGCCAgcgagggagagactgaggagaaAACAGAGCCTGAGACCACCCAGGTGGACCTGCTGTCCCAGGCAGAGATTGAGTCACTGCTCCGGAATGACCTACGTCCAGCCACCAAACCCTTCAAGGGCAACAGACTCTTCCTGAGGTTGGCCACCTACGATGATAAGAAGGAGATGGGTGCTGCGAGGAAGAGCAGATATTACATGAAGTACGGCAACCCCAACTACGGAGGCATGAGGGGCATCCTCAGCAACTCCtgGAAGAGACGGTATCACACACGCAGAATTGTGAGCAAGAGCAAGAAACCCCTCATAGGGGACAGCATGGGGGACACACCACCCTACAAACACAGCCACTCTGctgACCTGATCAACCTGCCAGAAGAACCaatagaggaagaagaggatgaggaagagggggaagaggacatGGACTCAGACGACAGGGTGGTGGAGTACAAGGagaagggggaaagagggagggtgagggtgGGGGGCCCAGTGGTGGCCCTGTGGAGTCGTTTGGGAAGACCCTCTTCCCCCTCGGTCTTGTCAGACTCAGACAAGATGGACTATGACTTGGAGCTCAAGATgatctccaccccctctcccaaGAAGAGCATGAAGATGACAATGTACGCAGACGAGGTCGAGACCAACCTCAGGACTATACGacACTCTGCTGTTCGGCGTGACAGCGGCTCGGGGGGTAGTGGCATCCGGAACAGGATTGGTGGAGGATCGGTGGGTGAGACCAAAAGCAGTGCGGTGGAGAAAGTGATAGACGTGAGGCAGCTATTGGAGGAGAAGAGGCGTGGCCTATCCCAGCACAAACATCGCCACCCTGTGGCCAGCATTGGAAatgtgaggCAGCGGTTAGGGAAGAGGCCGTACTCTTCTGAGAGACGACACTCCACCTCTCCCGTCGCCTCCCGAGACTCATCCCCTCCCCGAGAGCCGATCATAGATGTGCACAGGCGACTGGGCGTGGTAATACAAGACACCCGTGGCCTCCACCCCGATTTGTCCAAAGACAGGAAATCAAgtCGTCTGTGGAACAGGCTCGGCCCCTCCTCCTATAAGGGCGAAGTTCCCGTGCGGAAGCCTCCCAGTCACAGAGCGGGTTCGGGATCAACCAGCTCCAGGTTGGGGGGGCGGGGAGAAGAAGACGTTGAGAAGGAGAACGACTCTGCACTGCAGAAGGTGTGGGGGGCCTTGATCAAACAGAAGGAACAGCAGACCCACAAGATGAAGAGGAGTCGGCTTGACAACCTGCCCTCGCTACAGATAGAGATCAGCCGGGAGAGCAGCAACGGGTCCGACTCAGACTCctgagagactgagggagaggaagggtagggaGGGGGCAGAGAATGAGTAGGGGAACGAGACATGTTGATAGAAACTGAGTCGGGGAAGAGAGGTGTGAGTGAAATGCAGAATAAATACAAATGGTGGTAGAGGGTTTAGATCAGTGTGGATTGGGTCATGCCTTCCTCTAGAGCAGAAAGGTGACCACCCCCACCCCTGCTCTCCTCTTGAGTTACTCGTCTCTGTTTAGATCCTTATGGGCCCCCGTCGCTGTGACCTGGTCCATCGTACCAACACAAAAGAACTGGACAGAATTGTCTGATGTGGAGAGAAGTTATGGACAGGAGGCATATGATCTCTGCAGCCCATGGGACTGGTGTTCTGATCAAATGTGTTCCTGTGACATTTTACTGATGGCCTACCTACACTTCAAGTCATGTCAAATATTTAAAGGGCAATATAAATGTCTCTGTTGGCCCCTGTGATGTCAACTACAGAAGAACTGGGACAAGGATAAGATCCAGATACTGAGCGCTCTCCatggctctctgtgtgtgtggaaccAGACACAGGATCATACAGTCTATGGTATCTATGTGTGAGTGACTTTGAACAACAAATATTGAGTTTGTGGCATTTTATTTCCTTCCACAGGCTTGGCCCATAGAGACAACTAAACCAGATGAATCGATTCTCTACTGAAAGGTTTTGTACTGTCTCAATGTTTTATGTGCAAATGGCCAATGTTGTTATGTTTTTCAAGGCGGAAGATTCTTCAATGCCTGTGCCATCCTTCAAAGccccatagtacactacttttgaccagagccctatgtagggaatagtgtgccggtTTGAGGACGACCTTACATTCCCAGACAGAAAAGGAATTGATTTCATTAAGGCCTAAGCAGAAATAAAACATGTCAACAACTGTCTGCTTGTCTTGGCAA
>XM_036950231.1
AAACGGGGCATTAGTTCCTGTTTCGAAACCGGTCGCTCGCATCATGGCCGCAGTACGCAGCCTACGGGTTTCGGTGAAGTCAGACTGCTCAGAGTCGGATTCAGACCGAGATGCCCGCGAAGTTGAAccgatggaggtggaggagggcgaACTCGAGGCAGAGGACATCCCCGTTAACCGGTCCTTGAATGAAGTGCTGCCGGAGGCGATTCAGAGGACGGAGAAGAGCACAGAAAGTTTCCACTTCTGTGCACAGGCCAACCCAGGCCAGATTGTGGTACTAGACAGAGACACCATGAAGaaagccaTCCCTAACTTGCGCCTGGAGGCGTTGCATGTGGCGGGTGTGGATGATATGAGCACCCAGGATGTGTTTGGCTACTTTAAGGAGTACCCTCCAGCACACATTGAGTGGATCGACGACACCTCCTGTAACGTGGTGTGGCTGGATGATGTCACTTCCACCCGGGCTCTGATCAACATCAGCCACGTGCCTGACCCAGAGGTGGTTACCAAAGAGACAGGCGACACCAAAGAACTTGGTGATCCCACCCAGGAGAGCAAGGCTCGAGGGCAATCCAATtccgatgatgatgatgatgatgatgatgatgatggagaggtggaggaggagcaaAAAGAGCCGGTGAAAGAGAACCGTGAGGAGAGTGAGGGAAAAGCCAgcgagggagagactgaggagaaAACAGAGCCTGAGACCACCCAGGTGGACCTGCTGTCCCAGGCAGAGATTGAGTCACTGCTCCGGAATGACCTACGTCCAGCCACCAAACCCTTCAAGGGCAACAGACTCTTCCTGAGGTTGGCCACCTACGATGATAAGAAGGAGATGGGTGCTGCGAGGAAGAGCAGATATTACATGAAGTACGGCAACCCCAACTACGGAGGCATGAGGGGCATCCTCAGCAACTCCtgGAAGAGACGGTATCACACACGCAGAATTGTGAGCAAGAGCAAGAAACCCCTCATAGGGGACAGCATGGGGGACACACCACCCTACAAACACAGCCACTCTGctgACCTGATCAACCTGCCAGAAGAACCaatagaggaagaagaggatgaggaagagggggaagaggacatGGACTCAGACGACAGGGTGGTGGAGTACAAGGagaagggggaaagagggagggtgagggtgGGGGGCCCAGTGGTGGCCCTGTGGAGTCGTTTGGGAAGACCCTCTTCCCCCTCGGTCTTGTCAGACTCAGACAAGATGGACTATGACTTGGAGCTCAAGATgatctccaccccctctcccaaGAAGAGCATGAAGATGACAATGTACGCAGACGAGGTCGAGACCAACCTCAGGACTATACGacACTCTGCTGTTCGGCGTGACAGCGGCTCGGGGGGTAGTGGCATCCGGAACAGGATTGGTGGAGGATCGGTGGGTGAGACCAAAAGCAGTGCGGTGGAGAAAGTGATAGACGTGAGGCAGCTATTGGAGGAGAAGAGGCGTGGCCTATCCCAGCACAAACATCGCCACCCTGTGGCCAGCATTGGAAGTACGGatgtgaggCAGCGGTTAGGGAAGAGGCCGTACTCTTCTGAGAGACGACACTCCACCTCTCCCGTCGCCTCCCGAGACTCATCCCCTCCCCGAGAGCCGATCATAGATGTGCACAGGCGACTGGGCGTGGTAATACAAGACACCCGTGGCCTCCACCCCGATTTGTCCAAAGACAGGAAATCAAgtCGTCTGTGGAACAGGCTCGGCCCCTCCTCCTATAAGGGCGAAGTTCCCGTGCGGAAGCCTCCCAGTCACAGAGCGGGTTCGGGATCAACCAGCTCCAGGTTGGGGGGGCGGGGAGAAGAAGACGTTGAGAAGGAGAACGACTCTGCACTGCAGAAGGTGTGGGGGGCCTTGATCAAACAGAAGGAACAGCAGACCCACAAGATGAAGAGGAGTCGGCTTGACAACCTGCCCTCGCTACAGATAGAGATCAGCCGGGAGAGCAGCAACGGGTCCGACTCAGACTCctgagagactgagggagaggaagggtagggaGGGGGCAGAGAATGAGTAGGGGAACGAGACATGTTGATAGAAACTGAGTCGGGGAAGAGAGGTGTGAGTGAAATGCAGAATAAATACAAATGGTGGTAGAGGGTTTAGATCAGTGTGGATTGGGTCATGCCTTCCTCTAGAGCAGAAAGGTGACCACCCCCACCCCTGCTCTCCTCTTGAGTTACTCGTCTCTGTTTAGATCCTTATGGGCCCCCGTCGCTGTGACCTGGTCCATCGTACCAACACAAAAGAACTGGACAGAATTGTCTGATGTGGAGAGAAGTTATGGACAGGAGGCATATGATCTCTGCAGCCCATGGGACTGGTGTTCTGATCAAATGTGTTCCTGTGACATTTTACTGATGGCCTACCTACACTTCAAGTCATGTCAAATATTTAAAGGGCAATATAAATGTCTCTGTTGGCCCCTGTGATGTCAACTACAGAAGAACTGGGACAAGGATAAGATCCAGATACTGAGCGCTCTCCatggctctctgtgtgtgtggaaccAGACACAGGATCATACAGTCTATGGTATCTATGTGTGAGTGACTTTGAACAACAAATATTGAGTTTGTGGCATTTTATTTCCTTCCACAGGCTTGGCCCATAGAGACAACTAAACCAGATGAATCGATTCTCTACTGAAAGGTTTTGTACTGTCTCAATGTTTTATGTGCAAATGGCCAATGTTGTTATGTTTTTCAAGGCGGAAGATTCTTCAATGCCTGTGCCATCCTTCAAAGccccatagtacactacttttgaccagagccctatgtagggaatagtgtgccggtTTGAGGACGACCTTACATTCCCAGACAGAAAAGGAATTGATTTCATTAAGGCCTAAGCAGAAATAAAACATGTCAACAACTGTCTGCTTGTCTTGGCAA

Function

NR:

description
nuclear cap-binding protein subunit 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950237.1 False 2941 mRNA 0.53 12 51067491 51087131
XM_036950231.1 True 2946 mRNA 0.53 12 51067492 51087131

Neighbor

gene id symbol gene type direction distance location
sat2b sat2 coding upstream 58939 50982958 ~ 51008552 (+)
LOC110491193 LOC106560681 coding upstream 95318 50960131 ~ 50972173 (+)
LOC110491126 LOC106602822 coding upstream 183402 50717580 ~ 50884089 (+)
LOC110491108 NA coding upstream 378344 50678814 ~ 50689147 (+)
zgc:56585 pgdh coding upstream 487275 50575416 ~ 50580216 (+)
LOC118944166 NA coding downstream 7592 51094723 ~ 51094847 (+)
LOC110491269 LOC106560677 coding downstream 27076 51114207 ~ 51136900 (+)
LOC110491287 LOC106602850 coding downstream 146574 51233705 ~ 51236559 (+)
LOC110491302 LOC106560674 coding downstream 160610 51247741 ~ 51294746 (+)
LOC110501653 LOC106560673 coding downstream 229990 51317121 ~ 51339537 (+)
G154789 NA non-coding upstream 5436 51045642 ~ 51062055 (+)
G154775 NA non-coding upstream 24658 51039872 ~ 51042833 (+)
G154796 NA non-coding upstream 48501 51018640 ~ 51018990 (+)
G154776 NA non-coding upstream 82556 50984134 ~ 50984935 (+)
G154740 NA non-coding upstream 88199 50977573 ~ 50979292 (+)
G154823 NA non-coding downstream 2636 51089767 ~ 51090123 (+)
G154825 NA non-coding downstream 3358 51090489 ~ 51090717 (+)
G154829 NA non-coding downstream 11090 51098221 ~ 51098441 (+)
G154836 NA non-coding downstream 21669 51108800 ~ 51109074 (+)
G154837 NA non-coding downstream 24404 51111535 ~ 51111775 (+)
LOC110491026 LOC106560691 other upstream 967017 50098387 ~ 50100624 (+)
G152167 NA other upstream 2509805 48556782 ~ 48557686 (+)
G150997 NA other upstream 3519912 47497948 ~ 47547579 (+)
uevld uevld other upstream 4082265 46981686 ~ 47007672 (+)
G148191 NA other upstream 5575112 45472082 ~ 45492379 (+)
G154859 NA other downstream 78284 51165415 ~ 51167174 (+)
rl28 rl28 other downstream 325135 51412121 ~ 51417154 (+)
G155541 NA other downstream 333716 51420847 ~ 51421122 (+)
G156000 LOC106560791 other downstream 729379 51816510 ~ 51824182 (+)

Expression


Co-expression Network