LOC110491269 (LOC106560677)


Basic Information

Item Value
gene id LOC110491269
gene name LOC106560677
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51114207 ~ 51136900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950245.1
TCAGCATGAAAATGCATGCAACGCAACACTACAGTTTGAAACCGACCAACAGGCTACTGTTGattcactcactctcactctagTCACACGTTCTGGAAATGTTGTGAGAGTGCTTTCTAAATATAAccgcagagagagagcgggagagagagagcacctttCCAGCCGACTAAGGGTTCTCGCTGAGCTCACATACACGGGCCTGGCAGGAGAGAGAagggtgtgaggagaggagaccgAGTGCAACTTTGACAAGTCCCAAAATAAAACTTTTAGAGGGAGTTGAAACTTGATGTGAACGGGACGACAGTCAAGGCAGCTGCAGCAGAGGATGGAGGAGGACGCCCCGCCTAAGAAGTCAGTGGCGGAGCTGGCTGGAAAGTTCAAAGCTCATGCCCCTCCCTTCCCCACGGGAACTGACGGGAGTAATAAGCCTGTTAGGAGACGCCCCCCTCGAACCCTACATCTCCCCAAGACCACAGCACAGGGACAGGTGGACGAGGAGAAACCCATCTCCCCGTCTCTGCATCCTGCCAAAACCAAAAGGAACTCTGCTCTTATTGAGAAACTGCAGGGAAGAGCCCGCCTCTCCATCCGGCGACGCCCACCTTCGAGACGCCACAGGAAGTCCAGCGGAGAGGAAGGAGACGGGGTGACGGGTGAAGAGATGCCCCTAACTACACCCGACGACCCTGAGGCCAAAGttggggaggaagagaaaggagagggggaggaggtgtttGAGAAGGAAGTGGAAGAGAAGGATGGTGAAAGAGCAGACACCACTATGTATACCAAAGAAAAGATAGAGACAGGCTCCTCTACCCCTGCTAACTCACAGCAACAGATTGCCACAACAGACAGATCAACTACAGACCCTGACCCACTGGAAAAGACAAAGTCAGAAAAAacgctggagagacagacaggagaggagagacaggaggacaggcagacaggagaggaggcaaCAGGGTCTAGAGGAGAAGAGGTGAAAGATTGTGGTCAGGGGTGTGGAGGAGAAGaaaaggagaaggggagggagactTGTTCAGTGGAGGAgtcatctacagagagagagaaagaagagggggaagagctGGCCTGcaaagaaaaggagggagagagagatacagactgcAACGAAGAGAAGGAGAACACCAAGCTCTGATGGGCCGTAACCGCACCATGCCCCTGCCTTACAGAGTGGGAGAGCCCCATAGTGTGCACTAACTCCCCTCATCCCATAGCACATAGTGTAGTGGAAAAGGCGAGACTAGTATGGACTGCAGACTATGCCACTGGATGGACTCCCTTTAGTCCTCTGCATCTGGAAGGTCCTACACTCTggttccatcccaaatggcacactatgcCCAATATAGTGCAGTACGTTTGACCAGGTTcaataggcctctggtctaaagtagtgcactatatagggaatagggtgtcatttgggacataacTATGCACATTTTTGGACATGTTTCTTGTAAATTCTTATTTGGTGTCAGCCTGTGACTTTGTTATCTTTGGGCAGATTAATGCAAGGGATTTGCCTGTACAGCTTTCCCCAAAACATTTTATGACAAGACCTGGTAAATTATAACATTTTCCACAAAATACACAACATGCAGATTAGTAAAAACAACAGATTTCTAGAAAACGTTAGGCTATTTGATTTAAACTGGTGTTGAGAACAACGCTGCGGAGGCGGGCggcagctgtgtagtgctagggcaaaaaacatgCACCCAGGGGGGGCCCCACCGAGTTTGGGAATCCCTGGTCTAGATAAATCAATTAGATAAATCAATGAATGTCccatttttgttttttgttttcacTTCATCTCTGTTTTGATATTTTGTTACAATTAGGCTGGGGAAATGTTAGCTAAGTTGAAGTGAGTGCTAATGATCATCTTTAGTCTAGTTTGCTCACATATTAACTGATCAGAACATTTCGCTAGCATTTTATACAAGTGAATTTTGTGACTTGTGACTTGTCTGAtaatcaatcaatgtgattttgtttcactgaatctctgtCTGTATATTTGGTTAATTGATCTCTGGCTGGACAAGTGGAAGTGGTAGATCATCTATTCGTTTGCTCATCTATCCCTGAttagaaacatttagcatgcaatAATGTAAATCAAGATGATTATTTATCTATGGACTCACGTACTGTAGTAGCCTTATATAGAGCCTAGGCAATTTTCACATTGTCCCAATCCCACTGAAATCAAAAATCCTGACTCCTGTCTTGCATGAACATTCCAAACTTTATTCTGTAATCCTGTAGTCTAATAATGTAGTCTGGTATTGCTGCCGATGTGAGAGCTTCAGTAGAGAATGTGTGATCAACAAATGGTAGGCCGATGAGGGTAGATATggaaatattttttaaactgttGGTCTCCGTTAAGATACCTTGATATTTAAACACTTTCCTCTCTTCATCTCGCTGTTGTTCATGGGCTGATCTGCTATCTGTAtaatcatcaactagatttagcCAAATAGTCATTAATTGGAGGTAATCTAGCAAATTTAGCAACTTTGGACTTTtgttggggctcccgagtggtacaGTGGTCTAAGTCActccatctcagtgcaagagatggacctggtttgaatccaggctgtatcacatctggctgtgattgggagtcccatagggcggtgcacaattggcccagcattgttcggggtaggctgtcattgtaaataagattttgttcttaaactgacttgcctagttcaataaaggttcaatttgaacaaaaaatattaaaaaatgaCCGCCGTTTACAAACTTTGTGTGATTCGACAACGCTAAAGCCTACTCTGGGTGCACTCTGTGTGTCCTGAGCGCGCTCTgtgtcttattggacaagttcaggtaggtCTCTCCCCATTTCGGTCTGTTTGCTTCTTTTGCATCATTTCAAATGGGTGttaaaatcgaatcaaatcaaatgttatttgtcaaattagccgaatacaacaggtgcagctAGACCTTATAATGAAAttcttacttataagcccttgaccaacaatgcagtttttagaaAAATGCCtaaagaaaaataagaaataaatcattaaagagcagcagtaaaataacaatag
>XM_036950241.1
CATGAAAATGCATGCAACGCAACACTACAGTTTGAAACCGACCAACAGGCTACTGTTGattcactcactctcactctagTCACACGTTCTGGAAATGTTGTGAGAGTGCTTTCTAAATATAAccgcagagagagagcgggagagagagagcacctttCCAGCCGACTAAGGGTTCTCGCTGAGCTCACATACACGGGCCTGGCAGGAGAGAGAagggtgtgaggagaggagaccgAGTGCAACTTTGACAAGTCCCAAAATAAAACTTTTAGAGGGAGTTGAAACTTGATGTGAACGGGACGACAGTCAAGGCAGCTGCAGCAGAGGATGGAGGAGGACGCCCCGCCTAAGAAGTCAGTGGCGGAGCTGGCTGGAAAGTTCAAAGCTCATGCCCCTCCCTTCCCCACGGGAACTGACGGGAGTAATAAGCCTGTTAGGAGACGCCCCCCTCGAACCCTACATCTCCCCAAGACCACAGCACAGGGACAGGTGGACGAGGAGAAACCCATCTCCCCGTCTCTGCATCCTGCCAAAACCAAAAGGAACTCTGCTCTTATTGAGAAACTGCAGgctaaCCTGGCTTTATCCCCCTGTTCCCTTCTACCCTCTCCTAAGAGCCCTGGGCTGAAACTGTTGCCCCCCTCCttcacccccacctccacctgctcccccatccctcctgttACTACAGTAACCCCCACCTCCCCAGTCAGCAGGGCACCCCTCCCTCGGTCGCTGAGCGAGGAAGAGACACCTGCCACCTTTGAGGTCCCAGCCACACCCACCGACGGATCCCTACTGCCCAGTATCAACAAGGGAAGAGCCCGCCTCTCCATCCGGCGACGCCCACCTTCGAGACGCCACAGGAAGTCCAGCGGAGAGGAAGGAGACGGGGTGACGGGTGAAGAGATGCCCCTAACTACACCCGACGACCCTGAGGCCAAAGttggggaggaagagaaaggagagggggaggaggtgtttGAGAAGGAAGTGGAAGAGAAGGATGGTGAAAGAGCAGACACCACTATGTATACCAAAGAAAAGATAGAGACAGGCTCCTCTACCCCTGCTAACTCACAGCAACAGATTGCCACAACAGACAGATCAACTACAGACCCTGACCCACTGGAAAAGACAAAGTCAGAAAAAacgctggagagacagacaggagaggagagacaggaggacaggcagacaggagaggaggcaaCAGGGTCTAGAGGAGAAGAGGTGAAAGATTGTGGTCAGGGGTGTGGAGGAGAAGaaaaggagaaggggagggagactTGTTCAGTGGAGGAgtcatctacagagagagagaaagaagagggggaagagctGGCCTGcaaagaaaaggagggagagagagatacagactgcAACGAAGAGAAGGAGAACACCAAGCTCTGATGGGCCGTAACCGCACCATGCCCCTGCCTTACAGAGTGGGAGAGCCCCATAGTGTGCACTAACTCCCCTCATCCCATAGCACATAGTGTAGTGGAAAAGGCGAGACTAGTATGGACTGCAGACTATGCCACTGGATGGACTCCCTTTAGTCCTCTGCATCTGGAAGGTCCTACACTCTggttccatcccaaatggcacactatgcCCAATATAGTGCAGTACGTTTGACCAGGTTcaataggcctctggtctaaagtagtgcactatatagggaatagggtgtcatttgggacataacTATGCACATTTTTGGACATGTTTCTTGTAAATTCTTATTTGGTGTCAGCCTGTGACTTTGTTATCTTTGGGCAGATTAATGCAAGGGATTTGCCTGTACAGCTTTCCCCAAAACATTTTATGACAAGACCTGGTAAATTATAACATTTTCCACAAAATACACAACATGCAGATTAGTAAAAACAACAGATTTCTAGAAAACGTTAGGCTATTTGATTTAAACTGGTGTTGAGAACAACGCTGCGGAGGCGGGCggcagctgtgtagtgctagggcaaaaaacatgCACCCAGGGGGGGCCCCACCGAGTTTGGGAATCCCTGGTCTAGATAAATCAATTAGATAAATCAATGAATGTCccatttttgttttttgttttcacTTCATCTCTGTTTTGATATTTTGTTACAATTAGGCTGGGGAAATGTTAGCTAAGTTGAAGTGAGTGCTAATGATCATCTTTAGTCTAGTTTGCTCACATATTAACTGATCAGAACATTTCGCTAGCATTTTATACAAGTGAATTTTGTGACTTGTGACTTGTCTGAtaatcaatcaatgtgattttgtttcactgaatctctgtCTGTATATTTGGTTAATTGATCTCTGGCTGGACAAGTGGAAGTGGTAGATCATCTATTCGTTTGCTCATCTATCCCTGAttagaaacatttagcatgcaatAATGTAAATCAAGATGATTATTTATCTATGGACTCACGTACTGTAGTAGCCTTATATAGAGCCTAGGCAATTTTCACATTGTCCCAATCCCACTGAAATCAAAAATCCTGACTCCTGTCTTGCATGAACATTCCAAACTTTATTCTGTAATCCTGTAGTCTAATAATGTAGTCTGGTATTGCTGCCGATGTGAGAGCTTCAGTAGAGAATGTGTGATCAACAAATGGTAGGCCGATGAGGGTAGATATggaaatattttttaaactgttGGTCTCCGTTAAGATACCTTGATATTTAAACACTTTCCTCTCTTCATCTCGCTGTTGTTCATGGGCTGATCTGCTATCTGTAtaatcatcaactagatttagcCAAATAGTCATTAATTGGAGGTAATCTAGCAAATTTAGCAACTTTGGACTTTtgttggggctcccgagtggtacaGTGGTCTAAGTCActccatctcagtgcaagagatggacctggtttgaatccaggctgtatcacatctggctgtgattgggagtcccatagggcggtgcacaattggcccagcattgttcggggtaggctgtcattgtaaataagattttgttcttaaactgacttgcctagttcaataaaggttcaatttgaacaaaaaatattaaaaaatgaCCGCCGTTTACAAACTTTGTGTGATTCGACAACGCTAAAGCCTACTCTGGGTGCACTCTGTGTGTCCTGAGCGCGCTCTgtgtcttattggacaagttcaggtaggtCTCTCCCCATTTCGGTCTGTTTGCTTCTTTTGCATCATTTCAAATGGGTGttaaaatcgaatcaaatcaaatgttatttgtcaaattagccgaatacaacaggtgcagctAGACCTTATAATGAAAttcttacttataagcccttgaccaacaatgcagtttttagaaAAATGCCtaaagaaaaataagaaataaatcattaaagagcagcagtaaaataacaatag

Function

NR:

description
capZ-interacting protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950245.1 False 3149 mRNA 0.45 6 51114207 51136900
XM_036950241.1 True 3391 mRNA 0.46 7 51114211 51136900

Neighbor

gene id symbol gene type direction distance location
LOC118944166 NA coding upstream 19360 51094723 ~ 51094847 (+)
LOC110491259 LOC106560678 coding upstream 27076 51067491 ~ 51087131 (+)
sat2b sat2 coding upstream 105655 50982958 ~ 51008552 (+)
LOC110491193 LOC106560681 coding upstream 142034 50960131 ~ 50972173 (+)
LOC110491126 LOC106602822 coding upstream 230118 50717580 ~ 50884089 (+)
LOC110491287 LOC106602850 coding downstream 96805 51233705 ~ 51236559 (+)
LOC110491302 LOC106560674 coding downstream 110841 51247741 ~ 51294746 (+)
LOC110501653 LOC106560673 coding downstream 180221 51317121 ~ 51339537 (+)
LOC110491314 LOC106560671 coding downstream 238424 51375324 ~ 51405615 (+)
rl28 rl28 coding downstream 275221 51412121 ~ 51417154 (+)
G154837 NA non-coding upstream 2432 51111535 ~ 51111775 (+)
G154836 NA non-coding upstream 5133 51108800 ~ 51109074 (+)
G154829 NA non-coding upstream 15766 51098221 ~ 51098441 (+)
G154825 NA non-coding upstream 23490 51090489 ~ 51090717 (+)
G154823 NA non-coding upstream 24084 51089767 ~ 51090123 (+)
G154817 NA non-coding downstream 8636 51145536 ~ 51147897 (+)
G154901 NA non-coding downstream 157902 51294802 ~ 51299854 (+)
G155515 NA non-coding downstream 213726 51350626 ~ 51355466 (+)
G155489 NA non-coding downstream 251077 51387977 ~ 51400214 (+)
G155491 NA non-coding downstream 273437 51410337 ~ 51410863 (+)
LOC110491026 LOC106560691 other upstream 1013733 50098387 ~ 50100624 (+)
G152167 NA other upstream 2556521 48556782 ~ 48557686 (+)
G150997 NA other upstream 3566628 47497948 ~ 47547579 (+)
uevld uevld other upstream 4128981 46981686 ~ 47007672 (+)
G148191 NA other upstream 5621828 45472082 ~ 45492379 (+)
G154859 NA other downstream 28515 51165415 ~ 51167174 (+)
G155541 NA other downstream 283947 51420847 ~ 51421122 (+)
G156000 LOC106560791 other downstream 679610 51816510 ~ 51824182 (+)

Expression


Co-expression Network