LOC110491302 (LOC106560674)


Basic Information

Item Value
gene id LOC110491302
gene name LOC106560674
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51247741 ~ 51294746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564659.2
ATTTAAACTTCCCTAGTCAATCTCGTAATGAACTTTCAGGACTGTAACGCATGCAAGGATGACCGACTGTCTgtatgactgactgtctgactgatgaGGTGACTGACTTGAATAGTTATTATAAAAGCTAATAGCTGGACCTCAgcctcagaggagagagagacaagaagaaAGACTCTTCAGCATTCATACCCTGgATATTCACCAATTATTTGACACTCTGAAGTTCTGTGAATATGGTTCGTCCTTCCCGCCCCAGCGGTCACCGCCACTGTGACAGCTGTTTCAGCCAGTGCTGCAAGGCCTCTGTGGAGATCTCGGTGTCATGTGTGCTCATCCCCTGCCGCCTACAGTGTGGCGCCCTCTTTCACCTGTGCAAAGAGGAGGAGCATGCACTACTCTGCCCCAATGAGAGGGTGCCGTGCTTAAACGCAGGCTTCGGCTGTCCAATCAGCATGCCCCGTTCCTGGCTGGCGGCCCACCTGCAGGTCTGTCCAGCCAGCGTGGTGTGCTGCTCCATGGAGTGGAACCGCTGGCCAGCCGAGGAcgcccagtcacacacacattcgGCCCTGCAGGATAACctagtgaaggaggaggggggaggacacGGTGAGGCGCTGGACCTGGCCATGGCTCTGAGAGATCAGCACCATTTGTTCCACTCCCTGAAGATGAAGAATCTCTTCCCTGAGCTGATTGAGAGggtggaagtggaggagagggaggagcagaggagaagggaggggaggaggagggagaaggaagagaaggagagggaggcccTGGAGGCACAGGGAGTGGATGGACGACTGTCTTTCCCTAACAGGGTTGGCTGTGTGTCTCCTGCTAATCGAGGATGGTATGGACCCCTACCTGAGGATATTCAGGAGGCGgttatggagagggacagagagagggaggaggagagagagctgacccaggaggagagggaggagctggCCAGTGGAAGGGTGGTAGGATCAGAGGGCCCGGTGGCCTACGTCTGGGAGCGCATGTTTAACATGGAGAGGGGAGGCTGCATGATAGCTGAGGCTAACCAAGAGGCAAGGGCAAGGGGCAGAGGTCAGGGTCAAGCATCAGGAGTTAGAGGTCAAGAGATGGAGTCACATCAATCACAGACTCTGACCACCACAGGGACACACGCActtaatgacacacacacacacacagacaaacgccCCAACCCCCAGTGTGTGGCCTGTCTGGCCGGCACTAAGAAGAAGCAGATGTATTACTACAGCCAGCTGGAGCCCATGAAAATCAACACAGTGAGGACCTTTAAGATTCCCACCAGCTTCACGGCCAAACACACACGCATCAGGAACCCAGGACACCGGAAGAGGGTGGATATGGCCGTGGACACCAGCGACCTGGGGGTGGAGCCACAGGACATGCCTATCTGGGAGGAGGTGCAGGCCAGTCTGCTGTGTTCTCTGGAGAAGGAGCAGAGGGGTCACCTGATCGCTGAGTCACAGTCCAGCGACGCCCTCCTGAGCGACACAGGGACGCAGACCTACGCCTTCCTGTCAGCTCCGTTCGGTTGTGACACTTCATTGGCCAGTCTGACGGAGGACCGCCCCCTCCAGCTCCACCTCCAGCTGCAGGCGAAGGGTGTGACAGCCCGACACAACAAGTCTAGCTCCGCCTTCACCTTTCTCTGTGGACACACCTTCCAACGCAGAGAGTTCCCCAAACACTTCAGGAACGTGCACACCGACATACAGATGTGTGCTAGTGGTTGGTTTGAGCAGAGGTGTCCCCTAGCCTACCTGGGCTGCACTTACAGCCAGAGGAGGTTCCAGCCCTCCACACACACTGCCACCGTCACCTACAACAAAGAACTTAGTAGCTTCAGCCTGAGACCCACGGTCCCTGCCTCTCTAAATGAGGAACCCCAATACTCCAAGTCCCAGGCTGCTCCAGAACCAGTCTCAAACCTCAGGAGGCGAAGGTcgaggggtggaggtggaggggaccAGGACTCTCTGAGCACTCTGCCCTACGAGGTGCTGTACCACATGGCCAGCTTCCTGGACAGCCTTTCCCTGTCCCAACTGGCCCTGGTTTCCCACCTCATGAGGGAGGTGTGTTCCTCTCTGCTGCACGACAGGGGGATGGTCTCCCTCCTCTGGGAGAAGAAGACCTATAAGACTGGCATGGCCAAGTGGAAGGCCAAGAAGGTGGTGTGGCAGTTCAGTACTCTGTTCTCTCCAGTAGAAGCATGGTGTTTTGACAACAATGTACCCTCCATGTCAGACCACCTGAAGGTGTGCCCTTACTACGAGATGGAGCCCAGGACCGAGCGTGTGCTCCTGCCTCACATTGTCAACAACAAaattaacacagacacacaaagcaaCAGCAAAAGTCTGGTCACCCTGTTCCAGAAGAATATTTGAATAGTGTTTCATAAGATTTAATAGTGGTTCATAAGCTTTCAATAGTAGTTCATAAGGTTTGAATAGTGGTTCATTTGTGCTGCACTTACAATCCTCTaccctgagtgccagtctgtttgtgccatcatccttgtcactcattgtcatgccaaacatgtaTGGCTTGACAATAACATCAATAGAGTTGGCAAGAGCTTAAACATATCTGGGACCAAGTTAGCAATCTACTTAAAGAGCCACTGAACATGCTGATTGGcatgtgtgtttttctgttgctcattagAAAAATTAGATTTCAGTCTTGGAAGTGCGTTTCCTGACCGATTCTGCACTTGGTTAAGGATGTTTGTCCCCCATGACACACTGCGGAAGCCtatttcacttcctcaaaatccCCAGAATAAATCTAAGATAACTAAAGAAATCTGTaataaatgttttacatttcTGCTAAGGATGATTTAGTTGCGCAATtctacatctaactaagatgtttggggcagtatttctcaagttaaAAACAAAGTGTAAACAAAGTCTGAGCAGCTGGGCAGATCTGTCTCATAGTCTATGCTATTGAATAGAGAGCAATCACCGCAGCTGTTCACCCCATGTTAGTGGGCAAATTGACATCTTCAAATCAAAACCCAAACTTTATTAATTTACCCGTGGTGAAGCACAGATGTTCCAAACCGTCAGTCTGGGAGTGCAACTGGTCAactggagtcaggtgcaggagagcagagatgagtgaacaggcacactttaATTGGCAGAAGCACATCAGTTGGACGCAACAGCGTCACAACACTCCAGCCAAAGGCAAAAGCGAATAGAGCACAAATAATGAACAACAATACAATAACACAGGTTCAAAACAATACCCGGAAAAACCCAGCCTGCCACGTCACACAATAAACGTaacaaacaattacacacacagacatgggggggaacagaggataaTATACACATAGAGTGATGAGgggatgtaaaccaggtgtgcagaaaacaagacaaaacaaatggaaaatgaaaggcagagtggcgatggctagaagaccggtgacgtcgaccgccgagcgccgcctgaacaaggaaaggagccgacttcggcgggaGTCGTGACACAAACTCAGTTTTAGAGTACAGCACACATTTTGTTGTAACCCCGGACAAAAACacttttctgccctgctagagctgccccggtcaactgtaattgctgttattgtattttattaatttaatatttttttaactaggcaagtggaaagtggaaacgtctaggagcaacaatggctcagccgcaaagtgatagaccacacaagctcacagaaatgGACCACCAAGTGCTGTTCTCTGGATGAATGAATCATCTGGCACCATCTCCaactgacaaatctgggtttggtggatgccagaagaatactacctgcctgaatgcattgtgccaactgtaaagtttggtggaggggtaataatggtctggggctttt
>XM_021564667.2
ATTTAAACTTCCCTAGTCAATCTCGTAATGAACTTTCAGGACTGTAACGCATGCAAGGATGACCGACTGTCTgtatgactgactgtctgactgatgaGGTGACTGACTTGAATAGTTATTATAAAAGCTAATAGCTGGACCTCAgcctcagaggagagagagacaagaagaaAGACTCTTCAGCATTCATACCCTGgATATTCACCAATTATTTGACACTCTGAAGTTCTGTGAATATGGTTCGTCCTTCCCGCCCCAGCGGTCACCGCCACTGTGACAGCTGTTTCAGCCAGTGCTGCAAGGCCTCTGTGGAGATCTCGGTGTCATGTGTGCTCATCCCCTGCCGCCTACAGTGTGGCGCCCTCTTTCACCTGTGCAAAGAGGAGGAGCATGCACTACTCTGCCCCAATGAGAGGGTGCCGTGCTTAAACGCAGGCTTCGGCTGTCCAATCAGCATGCCCCGTTCCTGGCTGGCGGCCCACCTGCAGGTCTGTCCAGCCAGCGTGGTGTGCTGCTCCATGGAGTGGAACCGCTGGCCAGCCGAGGAcgcccagtcacacacacattcgGCCCTGCAGGATAACctagtgaaggaggaggggggaggacacGGTGAGGCGCTGGACCTGGCCATGGCTCTGAGAGATCAGCACCATTTGTTCCACTCCCTGAAGATGAAGAATCTCTTCCCTGAGCTGATTGAGAGggtggaagtggaggagagggaggagcagaggagaagggaggggaggaggagggagaaggaagagaaggagagggaggcccTGGAGGCACAGGGAGTGGATGGACGACTGTCTTTCCCTAACAGGGTTGGCTGTGTGTCTCCTGCTAATCGAGGATGGTATGGACCCCTACCTGAGGATATTCAGGAGGCGgttatggagagggacagagagagggaggaggagagagagctgacccaggaggagagggaggagctggCCAGTGGAAGGGTGGTAGGATCAGAGGGCCCGGTGGCCTACGTCTGGGAGCGCATGTTTAACATGGAGAGGGGAGGCTGCATGATAGCTGAGGCTAACCAAGAGGCAAGGGCAAGGGGCAGAGGTCAGGGTCAAGCATCAGGAGTTAGAGGTCAAGAGATGGAGTCACATCAATCACAGACTCTGACCACCACAGGGACACACGCActtaatgacacacacacacacacagacaaacgccCCAACCCCCAGTGTGTGGCCTGTCTGGCCGGCACTAAGAAGAAGCAGATGTATTACTACAGCCAGCTGGAGCCCATGAAAATCAACACAGTGAGGACCTTTAAGATTCCCACCAGCTTCACGGCCAAACACACACGCATCAGGAACCCAGGACACCGGAAGAGGGTGGATATGGCCGTGGACACCAGCGACCTGGGGGTGGAGCCACAGGACATGCCTATCTGGGAGGAGGTGCAGGCCAGTCTGCTGTGTTCTCTGGAGAAGGAGCAGAGGGGTCACCTGATCGCTGAGTCACAGTCCAGCGACGCCCTCCTGAGCGACACAGGGACGCAGACCTACGCCTTCCTGTCAGCTCCGTTCGGTTGTGACACTTCATTGGCCAGTCTGACGGAGGACCGCCCCCTCCAGCTCCACCTCCAGCTGCAGGCGAAGGGTGTGACAGCCCGACACAACAAGTCTAGCTCCGCCTTCACCTTTCTCTGTGGACACACCTTCCAACGCAGAGAGTTCCCCAAACACTTCAGGAACGTGCACACCGACATACAGATGTGTGCTAGTGGTTGGTTTGAGCAGAGGTGTCCCCTAGCCTACCTGGGCTGCACTTACAGCCAGAGGAGGTTCCAGCCCTCCACACACACTGCCACCGTCACCTACAACAAAGAACTTAGTAGCTTCAGCCTGAGACCCACGGTCCCTGCCTCTCTAAATGAGGAACCCCAATACTCCAAGTCCCAGGCTGCTCCAGAACCAGTCTCAAACCTCAGGAGGCGAAGGTcgaggggtggaggtggaggggaccAGGACTCTCTGAGCACTCTGCCCTACGAGGTGCTGTACCACATGGCCAGCTTCCTGGACAGCCTTTCCCTGTCCCAACTGGCCCTGGTTTCCCACCTCATGAGGGAGGTGTGTTCCTCTCTGCTGCACGACAGGGGGATGGTCTCCCTCCTCTGGGAGAAGAAGACCTATAAGACTGGCATGGCCAAGTGGAAGGCCAAGAAGGTGGTATTCTGAAGTGCAGCCAGAGGGAAGCCTCTCGAACTGAGGGTGTAGAGAGCCGGAAAGGTCGCCAATGACAGACGGTGCCTTCTTTTTGGTTGCCTTCTGGAACAGACCGCTCAACTGAGCCTGTGGTCGACCAATTACTGTGCTGGCTGTGTTTTCTCTGCTTGTTAGTTTGCTTTTGCTCCTCACGCTCAGATTACCGTACCAGACTGTCAatttttattaaaacattttatttcacctttatttaaccaggtaggcaagttgagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcagttcgacacatac

Function

NR:

description
F-box only protein 40-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564659.2 False 3922 mRNA 0.51 7 51247741 51293224
XM_021564667.2 True 2537 mRNA 0.55 7 51247741 51294746

Neighbor

gene id symbol gene type direction distance location
LOC110491287 LOC106602850 coding upstream 11182 51233705 ~ 51236559 (+)
LOC110491269 LOC106560677 coding upstream 110841 51114207 ~ 51136900 (+)
LOC118944166 NA coding upstream 152894 51094723 ~ 51094847 (+)
LOC110491259 LOC106560678 coding upstream 160610 51067491 ~ 51087131 (+)
sat2b sat2 coding upstream 239189 50982958 ~ 51008552 (+)
LOC110501653 LOC106560673 coding downstream 22375 51317121 ~ 51339537 (+)
LOC110491314 LOC106560671 coding downstream 80578 51375324 ~ 51405615 (+)
rl28 rl28 coding downstream 117375 51412121 ~ 51417154 (+)
LOC118944199 NA coding downstream 127110 51421856 ~ 51422029 (+)
LOC118944142 NA coding downstream 127591 51422337 ~ 51422453 (+)
G154817 NA non-coding upstream 99844 51145536 ~ 51147897 (+)
G154837 NA non-coding upstream 135966 51111535 ~ 51111775 (+)
G154836 NA non-coding upstream 138667 51108800 ~ 51109074 (+)
G154829 NA non-coding upstream 149300 51098221 ~ 51098441 (+)
G154825 NA non-coding upstream 157024 51090489 ~ 51090717 (+)
G154901 NA non-coding downstream 56 51294802 ~ 51299854 (+)
G155515 NA non-coding downstream 55880 51350626 ~ 51355466 (+)
G155489 NA non-coding downstream 93231 51387977 ~ 51400214 (+)
G155491 NA non-coding downstream 115591 51410337 ~ 51410863 (+)
G155492 NA non-coding downstream 136120 51430866 ~ 51501997 (+)
G154859 NA other upstream 80567 51165415 ~ 51167174 (+)
LOC110491026 LOC106560691 other upstream 1147267 50098387 ~ 50100624 (+)
G152167 NA other upstream 2690055 48556782 ~ 48557686 (+)
G150997 NA other upstream 3700162 47497948 ~ 47547579 (+)
uevld uevld other upstream 4262515 46981686 ~ 47007672 (+)
G155541 NA other downstream 126101 51420847 ~ 51421122 (+)
G156000 LOC106560791 other downstream 521764 51816510 ~ 51824182 (+)
G158778 LOC106560766 other downstream 2726862 54021608 ~ 54021904 (+)

Expression


Co-expression Network