LOC110491314 (LOC106560671)


Basic Information

Item Value
gene id LOC110491314
gene name LOC106560671
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51375324 ~ 51405615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950266.1
GACTGCGCGTGCGCGCCGTGCTGCCAGCCCACGCGCGGTCCGGAGGCGGTAGTGACGCCTGACTGAAATACAGCAGCAGAAAACAAGATGTCACCCAGCAGGGTCTgagcaaaaacaaaacatttgatcGGCTTTTTTATTATCGCAGAACAAGGACTATGAGACAGATCATTCATAGAAGGTACCAGTTGTAGTCTCTGAGGACTGAGCAGCTGACCTGAGGACCCCCCCTACACCCTCACCCCTAGTCCAGAGGGCGAGAGCAGCCACTACAGCCACCATGGTGCTGTCACAGAGACAACGAGATGaactaaacCGAGCGATAGGAGACTACCTCCGCTCAAACGGCTATGAAGAAGCCTATTCCACCTTCAAGAAAGAGGCAGAGTTAGATATGAATGAGGAGCTAGATAAGAAGTATGCTGGTCTTTTGGAGAAGAAATGGACCTCTGTCATCAGATTACAGAAGAAGgtgATGGAGCTGGAGTCTAAGCTGAACGAGGCCAAGGAGGAGATGACTCTAGGGGGTCCTGTGGCCCAGAAGAGGGATCCTAAGGAGTGGATCCCCCGTCCCCCAGAGAGATACGCCCTAAGCGGCCACCGCTCCCCCGTCACACGGGTCATCTTCCACCCGGTCTTCTCTGTCATGGTCACTGCTTCTGAGGACGCCACCATCAAGGTGTGGGACTATGAGGCAGGGGACTTTGAGCGGACACTGAAGGGTCATACAGACTCTGTCCAGGACATCTCCTTTGACCAGACGGGCAAGCTGCTGGCCTCCTGCTCTGCAGACATGACCATCAAGCTGTGGGACTTCCAGGGCTTTGAGTGCATCCGCACCATGCACGGTCATGACCACAACGTGTCTTCTGTAGCCATCATGCCCAATGGAGACCACATAGTCTCTGCCTCCAGAGACAAGACCATCAAGATGTGGGAGGTGGCCActggGTATTGTGTGAAGACATTCACAGGCCACAGAGAATGGGTGAGGATGGTCCGGCCCAACCAGGATGGTTCTCTTATCGCCAGCTGTTCCAACGACCAGACGGTGCGTGTGTGGGTGGCCACCTCCAAGGAGTGTAAGGCTGAGCTGCGGGAGCACGAACACGTGGTGGAGTGTATTGCCTGGGCCCCCGATACTGCTCACCCCACTATCCTGGAGGCTACTGGCTCAGAGAGTAAGAAGAGTGGGAAGCCCGGCCCATTCCTTCTCTCTGGCTCTAGAGATAAGACCATCAAGATGTGGGACATCAGCACTGGCATGTGCCTTATGActctgGTGGGTCATGATAACTGGGTGCGTGGTGTGTTGGTGCACCCTGGAGGCAGGTTCATAGTGAGCTGTGCTGATGATAAGACTCTGAGGATCTGGGACTACAAGAACAAGCGCTGCATGAAGACCCTGTGTGCCCACGAACACTTTGTTACCTCTCTGGGCTCTATGACGACAACTGAGGACACCCTGGCCTTACCAGGATGTGCCTGGTCCAATCCCACCTGGCTCCCATCTAACTGCTACCTGCCTGTTGCTGCCTCCGCTGGTTCTTTCTTCCCAACAAGTCACTGAAACCTGAGCCAGATTTAGCTTTGAGCCTCTTTGCAGATGTCTTCAATACATAAAATGtatatgttatggctttacatcccctgctatattgtggataaagagttacctgtctaacagaacacagagtgcgttctttaatggaagcctctccatcataatccaggtagaatcaggacaTGCCACTGGCTTCGAGTAAAGCCAGAGtatctatgtatgcggatgactcaacactatacacgtcagctacta
>XM_036950263.1
CTGCGCGTGCGCGCCGTGCTGCCAGCCCACGCGCGGTCCGGAGGCGGTAGTGACGCCTGACTGAAATACAGCAGCAGAAAACAAGATGTCACCCAGCAGGGTCTgagcaaaaacaaaacatttgatcGGCTTTTTTATTATCGCAGAACAAGGACTATGAGACAGATCATTCATAGAAGGTTGTAGTCTCTGAGGACTGAGCAGCTGACCTGAGGACCCCCCCTACACCCTCACCCCTAGTCCAGAGGGCGAGAGCAGCCACTACAGCCACCATGGTGCTGTCACAGAGACAACGAGATGaactaaacCGAGCGATAGGAGACTACCTCCGCTCAAACGGCTATGAAGAAGCCTATTCCACCTTCAAGAAAGAGGCAGAGTTAGATATGAATGAGGAGCTAGATAAGAAGTATGCTGGTCTTTTGGAGAAGAAATGGACCTCTGTCATCAGATTACAGAAGAAGgtgATGGAGCTGGAGTCTAAGCTGAACGAGGCCAAGGAGGAGATGACTCTAGGGGGTCCTGTGGCCCAGAAGAGGGATCCTAAGGAGTGGATCCCCCGTCCCCCAGAGAGATACGCCCTAAGCGGCCACCGCTCCCCCGTCACACGGGTCATCTTCCACCCGGTCTTCTCTGTCATGGTCACTGCTTCTGAGGACGCCACCATCAAGGTGTGGGACTATGAGGCAGGGGACTTTGAGCGGACACTGAAGGGTCATACAGACTCTGTCCAGGACATCTCCTTTGACCAGACGGGCAAGCTGCTGGCCTCCTGCTCTGCAGACATGACCATCAAGCTGTGGGACTTCCAGGGCTTTGAGTGCATCCGCACCATGCACGGTCATGACCACAACGTGTCTTCTGTAGCCATCATGCCCAATGGAGACCACATAGTCTCTGCCTCCAGAGACAAGACCATCAAGATGTGGGAGGTGGCCActggGTATTGTGTGAAGACATTCACAGGCCACAGAGAATGGGTGAGGATGGTCCGGCCCAACCAGGATGGTTCTCTTATCGCCAGCTGTTCCAACGACCAGACGGTGCGTGTGTGGGTGGCCACCTCCAAGGAGTGTAAGGCTGAGCTGCGGGAGCACGAACACGTGGTGGAGTGTATTGCCTGGGCCCCCGATACTGCTCACCCCACTATCCTGGAGGCTACTGGCTCAGAGAGTAAGAAGAGTGGGAAGCCCGGCCCATTCCTTCTCTCTGGCTCTAGAGATAAGACCATCAAGATGTGGGACATCAGCACTGGCATGTGCCTTATGActctgGTGGGTCATGATAACTGGGTGCGTGGTGTGTTGGTGCACCCTGGAGGCAGGTTCATAGTGAGCTGTGCTGATGATAAGACTCTGAGGATCTGGGACTACAAGAACAAGCGCTGCATGAAGACCCTGTGTGCCCACGAACACTTTGTTACCTCTCTGGGCTCTATGACGACAACTGAGGACACCCTGGCCTTACCAGGATGTGCCTGGTCCAATCCCACCTGGCTCCCATCTAACTGCTACCTGCCTGTTGCTGCCTCCGCTGGTTCTTTCTTCCCAACAAGTCACTGAAACCTGAGCCAGATTTAGCTTTGAGCCTCTTTGCAGATGTCTTCAATACATAAAATGtatatgttatggctttacatcccctgctatattgtggataaagagttacctgtctaacagaacacagagtgcgttctttaatggaagcctctccatcataatccaggtagaatcaggacaTGCCACTGGCTTCGAGTAAAGCCAGAGtatctatgtatgcggatgactcaacactatacacgtcagctact
>XM_021564680.2
GCGCGCCGTGCTGCCAGCCCACGCGCGGTCCGGAGGCGGTAGTGACGCCTGACTGAAATACAGCAGCAGAAAACAAGATGTCACCCAGCAGGGTCTgagcaaaaacaaaacatttgatcGGCTTTTTTATTATCGCAGAACAAGGACTATGAGACAGATCATTCATAGAAGGTTGTAGTCTCTGAGGACTGAGCAGCTGACCTGAGGACCCCCCCTACACCCTCACCCCTAGTCCAGAGGGCGAGAGCAGCCACTACAGCCACCATGGTGCTGTCACAGAGACAACGAGATGaactaaacCGAGCGATAGGAGACTACCTCCGCTCAAACGGCTATGAAGAAGCCTATTCCACCTTCAAGAAAGAGGCAGAGTTAGATATGAATGAGGAGCTAGATAAGAAGTATGCTGGTCTTTTGGAGAAGAAATGGACCTCTGTCATCAGATTACAGAAGAAGgtgATGGAGCTGGAGTCTAAGCTGAACGAGGCCAAGGAGGAGATGACTCTAGGGGGTCCTGTGGCCCAGAAGAGGGATCCTAAGGAGTGGATCCCCCGTCCCCCAGAGAGATACGCCCTAAGCGGCCACCGCTCCCCCGTCACACGGGTCATCTTCCACCCGGTCTTCTCTGTCATGGTCACTGCTTCTGAGGACGCCACCATCAAGGTGTGGGACTATGAGGCAGGGGACTTTGAGCGGACACTGAAGGGTCATACAGACTCTGTCCAGGACATCTCCTTTGACCAGACGGGCAAGCTGCTGGCCTCCTGCTCTGCAGACATGACCATCAAGCTGTGGGACTTCCAGGGCTTTGAGTGCATCCGCACCATGCACGGTCATGACCACAACGTGTCTTCTGTAGCCATCATGCCCAATGGAGACCACATAGTCTCTGCCTCCAGAGACAAGACCATCAAGATGTGGGAGGTGGCCActggGTATTGTGTGAAGACATTCACAGGCCACAGAGAATGGGTGAGGATGGTCCGGCCCAACCAGGATGGTTCTCTTATCGCCAGCTGTTCCAACGACCAGACGGTGCGTGTGTGGGTGGCCACCTCCAAGGAGTGTAAGGCTGAGCTGCGGGAGCACGAACACGTGGTGGAGTGTATTGCCTGGGCCCCCGATACTGCTCACCCCACTATCCTGGAGGCTACTGGCTCAGAGAGTAAGAAGAGTGGGAAGCCCGGCCCATTCCTTCTCTCTGGCTCTAGAGATAAGACCATCAAGATGTGGGACATCAGCACTGGCATGTGCCTTATGActctgGTGGGTCATGATAACTGGGTGCGTGGTGTGTTGGTGCACCCTGGAGGCAGGTTCATAGTGAGCTGTGCTGATGATAAGACTCTGAGGATCTGGGACTACAAGAACAAGCGCTGCATGAAGACCCTGTGTGCCCACGAACACTTTGTTACCTCTCTGGATATGCACCGGACTGCTCCCtacgtggtgacaggcagcgttGATCAGACAGTCAAAGTGTGGGAGTGTCGCTGAGTCTGCCTGCTACCTCCCTCTCATCTTCCTCTCTACCCTCCAACCACAGCCTTATACACCCCCCCAACCTCCTGCTCTTCTCTTCCAGAAGGAGCATTAGTGCTCCCCTAAATAGCagcctctcctccccaccacctcTATCCTCCAACCACAACCCTATACCCCCTCCTACCCACAATCCGACACTTTCTCTCTGACACTCACCTAAGCCCAACCTCTCGCACTCTATACCATTGTTATCCAGGCTTTGCCCCTCATCTCCCGGCCctgttttaaaataaatattgatTGTCCTTTTATGTAAATTATTCTGGATGTAGAGTATGCTTAAtaaatattacacacacacacattctctcgcacacacactaAAAGAAAAAATCAGTATTCCTTGGCTGGTGATTTCCCCAAAAAACGTGCATACTGTAAATTTGCCATGACGTGGGGGTCAAAGGGTAAATGGTTCCTGTGTCCTTGCCCAGTGGATGCTGGGTAATTGTGACTGTGCACATAAACCAATCACGTCTGTTCTTTAAGGGTTTGGTTTGGGTTTTATTTTGTTTCTTCCTGCTACTTATTCTGACGCTacctaggagagagagaagagtgtgaaAGGAAGAGAATTGTGACGGAGGAGTAGAATAAGAGATGACTGGTAGTGTCTGTGCGTACTTTGTGTAGTCTGTGTATGgcggtagagaatagaggttgtgtgtgtggaggcaaGGCTTTCTGTCCCTCTGTTTATACTCCCTCTCACTTACTGGTAACTGACTGGCTTCTAGTAGATACTCACAAGGATATTAAAGATCCCTATGCTGTAAAGAACACACACAAATGAAGACTTTATCTCGCTCCGTCATACACACACTTCAAGGAAGATGCATAGATGAGCAgatgtgttacacacacacaccacatacatacacaaacttCTGCTGTCATGTGTCCCAAGAGCACCCCATGCCCACTCATTCTCTGCTGTCTCTGCCTTGTTAACCCTCTTGAGGTCTCCCTCACCAAGGGATTTCCTTCTGCTTTCTGTACTCTTACTGCTCTATttgtcacacactcacacagatgcACATAAGCACAGTAAACTTGTGTTCCAATATATCTGTATGTGATTGTTTGCAACATAAAAATATCTGTAAATATAA

Function

NR:

description
lissencephaly-1 homolog B-like

GO:

id name namespace
GO:0006928 movement of cell or subcellular component biological_process
GO:0030154 cell differentiation biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0007399 nervous system development biological_process
GO:0006810 transport biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005874 microtubule cellular_component
GO:0005875 microtubule associated complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16794 PAFAH1B1, LIS1; platelet-activating factor acetylhydrolase IB subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950266.1 False 1819 mRNA 0.53 11 51375324 51405615
XM_036950263.1 False 1810 mRNA 0.53 11 51375326 51405614
XM_021564680.2 True 2657 mRNA 0.50 11 51375334 51403672

Neighbor

gene id symbol gene type direction distance location
LOC110501653 LOC106560673 coding upstream 35787 51317121 ~ 51339537 (+)
LOC110491302 LOC106560674 coding upstream 80578 51247741 ~ 51294746 (+)
LOC110491287 LOC106602850 coding upstream 138765 51233705 ~ 51236559 (+)
LOC110491269 LOC106560677 coding upstream 238424 51114207 ~ 51136900 (+)
LOC118944166 NA coding upstream 280477 51094723 ~ 51094847 (+)
rl28 rl28 coding downstream 6506 51412121 ~ 51417154 (+)
LOC118944199 NA coding downstream 16241 51421856 ~ 51422029 (+)
LOC118944142 NA coding downstream 16722 51422337 ~ 51422453 (+)
LOC118944140 NA coding downstream 23839 51429454 ~ 51429572 (+)
cspg4 cspg4 coding downstream 1497576 52903191 ~ 53018812 (+)
G155515 NA non-coding upstream 19858 51350626 ~ 51355466 (+)
G154901 NA non-coding upstream 75470 51294802 ~ 51299854 (+)
G154817 NA non-coding upstream 227427 51145536 ~ 51147897 (+)
G154837 NA non-coding upstream 263549 51111535 ~ 51111775 (+)
G154836 NA non-coding upstream 266250 51108800 ~ 51109074 (+)
G155491 NA non-coding downstream 4722 51410337 ~ 51410863 (+)
G155492 NA non-coding downstream 25251 51430866 ~ 51501997 (+)
G155845 NA non-coding downstream 187227 51592842 ~ 51593164 (+)
G155940 LOC106613263 non-coding downstream 321906 51727521 ~ 51835110 (+)
G156000 LOC106560791 non-coding downstream 410895 51816510 ~ 51824182 (+)
G154859 NA other upstream 208150 51165415 ~ 51167174 (+)
LOC110491026 LOC106560691 other upstream 1274850 50098387 ~ 50100624 (+)
G152167 NA other upstream 2817638 48556782 ~ 48557686 (+)
G150997 NA other upstream 3827745 47497948 ~ 47547579 (+)
G155541 NA other downstream 15232 51420847 ~ 51421122 (+)
G158778 LOC106560766 other downstream 2615993 54021608 ~ 54021904 (+)
G159415 NA other downstream 2947368 54352983 ~ 54353388 (+)

Expression


Co-expression Network