rl28 (rl28)


Basic Information

Item Value
gene id rl28
gene name rl28
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51412121 ~ 51417154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617634.2
TCAAACAAAAATGATTTTATAAGCACATTTTTTGAAAATATTGCCGTTTGTCTGACTCCTTATTCATCTTCTGATTTTCTCTcgggggaaaaaaaatatttcaacGTGCATGGATCTATCAAATACTCAATGTAATGCGGTTTCCGCCCTTTTTTGTCCTCTTTTTCCGCTGGAAGGTTCGTCAACATGTCTTCTCATCTGCAGTGGATGGTCATTAGGAACTGCTCCAGCTTCCTCATCAAGAGGAATGGACAGACTTACAGCACCGAGCCCAACAACCTGAAGTCCAAGAACTCCTTCCGTTTCAACGGGCTGGTGCACAGGAAGACTGTTGGTGTTCAGCCTGCAGCTGATGGAAAGGGTGTTGTTGTCGTGCTGAAGAAGCGTGCAGGCCAGCGCAAGCCTGCCACTTCATATGAGAAGATCACCATCAACAAGAACTCGCGTGCCACTCTCAGCAGCCTGAGGCACATCATCCGCAAGAGCAACTACAGAAAGGACCTGCGCATGGCTGCTCTGCGTCGTGCCAGCGCCATCCTGATGAGCCAGAAGCGTGTGGTGGTGGTGAAGAGGCGTTCCAAGGCTGCCAAGACTGCATAAAGTTGGCGAGTtataagaaataaaaataaaaaaatggtttGAGAAACAC
>NM_001160602.2
CCTCTTTTTCCGCTGGAAGGTTCGTCAACATGTCTTCTCATCTGCAGTGGATGGTCATTAGGAACTGCTCCAGCTTCCTCATCAAGAGGAATGGACAGACTTACAGCACCGAGCCCAACAACCTGAAGTCCAAGAACTCCTTCCGTTTCAACGGGCTGGTGCACAGGAAGACTGTTGGTGTTCAGCCTGCAGCTGATGGAAAGGGTGTTGTTGTCGTGCTGAAGAAGCGTGCAGGCCAGCGCAAGCCTGCCACTTCATATGAGAAGATCACCATCAACAAGAACTCGCGTGCCACTCTCAGCAGCCTGAGGCACATCATCCGCAAGAGCAACTACAGAAAGGACCTGCGCCATCCTGATGAGCCAGAAGCGTGTGGTGGTGGTGAAGAGGCGTTCCAAGGCTGCCAAGACTGCATAAAGTTGGCGAGTtataagaaataaaaataaaaaaatggtttGAGAAAC
>XM_021617645.2
CTTGTAGTCGTATTAAAAATGTCGAACAATTTGACCTGTGCTATGTTTAGATTGCTAATTGTTTAATAACAGCGTACGTTTTTATTACATAGGTGTGATATTGATTGTAGCGATACTTTTTATAGACATTTCTAATCGAACTATTTCAAATCGGTCAGCCTGCTGCTAGGCCCTAAATCAGTCTGCCATACTACGAGGTTCGTCAACATGTCTTCTCATCTGCAGTGGATGGTCATTAGGAACTGCTCCAGCTTCCTCATCAAGAGGAATGGACAGACTTACAGCACCGAGCCCAACAACCTGAAGTCCAAGAACTCCTTCCGTTTCAACGGGCTGGTGCACAGGAAGACTGTTGGTGTTCAGCCTGCAGCTGATGGAAAGGGTGTTGTTGTCGTGCTGAAGAAGCGTGCAGGCCAGCGCAAGCCTGCCACTTCATATGAGAAGATCACCATCAACAAGAACTCGCGTGCCACTCTCAGCAGCCTGAGGCACATCATCCGCAAGAGCAACTACAGAAAGGACCTGCGCATGGCTGCTCTGCGTCGTGCCAGCGCCATCCTGATGAGCCAGAAGCGTGTGGTGGTGGTGAAGAGGCGTTCCAAGGCTGCCAAGACTGCATAAAGTTGGCGAGTtataagaaataaaaataaaaaaatggtttGAGAAACAC
>XM_021617626.2
CTCAACTGGACCATATTCATGCAATTTAGGTTCGTCAACATGTCTTCTCATCTGCAGTGGATGGTCATTAGGAACTGCTCCAGCTTCCTCATCAAGAGGAATGGACAGACTTACAGCACCGAGCCCAACAACCTGAAGTCCAAGAACTCCTTCCGTTTCAACGGGCTGGTGCACAGGAAGACTGTTGGTGTTCAGCCTGCAGCTGATGGAAAGGGTGTTGTTGTCGTGCTGAAGAAGCGTGCAGGCCAGCGCAAGCCTGCCACTTCATATGAGAAGATCACCATCAACAAGAACTCGCGTGCCACTCTCAGCAGCCTGAGGCACATCATCCGCAAGAGCAACTACAGAAAGGACCTGCGCATGGCTGCTCTGCGTCGTGCCAGCGCCATCCTGATGAGCCAGAAGCGTGTGGTGGTGGTGAAGAGGCGTTCCAAGGCTGCCAAGACTGCATAAAGTTGGCGAGTtataagaaataaaaataaaaaaatggtttGAGAAACAC
>XM_021617652.2
GTTCGTCAACATGTCTTCTCATCTGCAGTGGATGGTCATTAGGAACTGCTCCAGCTTCCTCATCAAGAGGAATGGACAGACTTACAGCACCGAGCCCAACAACCTGAAGTCCAAGAACTCCTTCCGTTTCAACGGGCTGGTGCACAGGAAGACTGTTGGTGTTCAGCCTGCAGCTGATGGAAAGGGTGTTGTTGTCGTGCTGAAGAAGCGTGCAGGCCAGCGCAAGCCTGCCACTTCATATGAGAAGATCACCATCAACAAGAACTCGCGTGCCACTCTCAGCAGCCTGAGGCACATCATCCGCAAGAGCAACTACAGAAAGGACCTGCGCATGCGCCATCCTGATGAGCCAGAAGCGTGTGGTGGTGGTGAAGAGGCGTTCCAAGGCTGCCAAGACTGCATAAAGTTGGCGAGTtataagaaataaaaataaaaaaatggtttGAGAAACACTACCCTGTCAGTCTTCAATCTTTGGGTCGTAAGAATAAAGAGCAATGCCTCAA
>TU177846
GCCCTTTTTTGTCCTCTTTTTCCGCTGGAAGGTAACGTGGTTGTTTGGTGTTCTTGTAGTCGTATTAAAAATGTCGAACAATTTGACCTGTGCTATGTTTAGATTGCTAATTGTTTAATAACAGCGTACGTTTTTATTACATAGGTGTGATATTGATTGTAGCGATACTTTTTATAGACATTTCTAATCGAACTATTTCAAATCGGTCAGCCTGCTGCTAGGCCCTAAATCAGTCTGCCATACTACGAGGTAAAGATAGCTGGCGTGGTTGTTTGTCCTATACAGAGCACGGGGCTTCGACGTGCGCCCTCATTTGTAATCTGGTGTAGCTAATGCTTGTCAACTATATATATTTTGCATATTGTAAATCCCTTTAATCGGAAACAGTTGAAGAGCTTAACACGCGATATTCACAGTCCCACTCAACTGGACCATATTCATGCAATTTAGGTACCTAACTTCCTATCCTAGCTATTTAGCTAATTGAATTAGTTTGAGGTAGCCAATTACTAGTTGGGTACATTTTTGCCAACTATAGGAATGTGACAAAACGATCCTGCAAAGTTGCTATGTTTTATAGCCTGGCttttagccaacgttagccaaaCAAACAATGAACTTGTTCTATTAACGTTCGTTTTCTGCAAAATGTGCCTTTGATTCCCGTGTTACTTGACTAACTTGTATTAAacggcctcattgccaaaatccattTATCGACTTCACCAGAGTCCGATAAACTCGTGGGTACCATTTGTCTGTCCAGTATGGAGGAAGTGCGCTAGTTTCGCGAGCCAATTTTAACTAGCCTtggcgcaatgactggaagtctatgggtatctgctatcCCTTTAACGCTTATTGTCTGTCCCAGGTTCGTCAACATGTCTTCTCATCTGCAGTGGATGGTCATTAGGAACTGCTCCAGCTTCCTCATCAAGAGGAATGGACAGACTTACAGCACCGAGCCCAACAACCTGAAGTCCAAGAACTCCTTCCGTTTCAACGGGCTGGTGCACAGGAAGACTGTTGGTGTTCAGCCTGCAGCTGATGGAAAGGGTGTTGTTGTCGTGCTGAAGAAGCGTGCAGGCCAGCGCAAGCCTGCCACTTCATATGAGAAGATCACCATCAACAAGAACTCGCGTGCCACTCTCAGCAGCCTGAGGCACATCATCCGCAAGAGCAACTACAGAAAGGACCTGCGCATGGCTGCTCTGCGTCGTGCCAGCGCCATCCTGATGAGCCAGAAGCGTGTGGTGGTGGTGAAGAGGCGTTCCAAGGCTGCCAAGACTGCATAAAGTTGGCGAGTtataagaaataaaaataaaaaaatggtttGAGAAACACTACCCTGTCAGTCTTCA

Function

NR:

description
60S ribosomal protein L28 isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617634.2 False 649 mRNA 0.47 5 51412121 51417101
NM_001160602.2 False 464 mRNA 0.50 5 51412278 51417099
XM_021617645.2 False 670 mRNA 0.47 5 51412318 51417101
XM_021617626.2 False 502 mRNA 0.51 5 51412687 51417101
XM_021617652.2 False 506 mRNA 0.50 4 51413140 51417154
TU177846 True 1364 TUCP 0.42 4 51412266 51417118

Neighbor

gene id symbol gene type direction distance location
LOC110491314 LOC106560671 coding upstream 6506 51375324 ~ 51405615 (+)
LOC110501653 LOC106560673 coding upstream 72584 51317121 ~ 51339537 (+)
LOC110491302 LOC106560674 coding upstream 117375 51247741 ~ 51294746 (+)
LOC110491287 LOC106602850 coding upstream 175562 51233705 ~ 51236559 (+)
LOC110491269 LOC106560677 coding upstream 275221 51114207 ~ 51136900 (+)
LOC118944199 NA coding downstream 4702 51421856 ~ 51422029 (+)
LOC118944142 NA coding downstream 5183 51422337 ~ 51422453 (+)
LOC118944140 NA coding downstream 12300 51429454 ~ 51429572 (+)
cspg4 cspg4 coding downstream 1486037 52903191 ~ 53018812 (+)
snupn snupn coding downstream 1716343 53133497 ~ 53167781 (+)
G155491 NA non-coding upstream 1258 51410337 ~ 51410863 (+)
G155489 NA non-coding upstream 11907 51387977 ~ 51400214 (+)
G155515 NA non-coding upstream 56655 51350626 ~ 51355466 (+)
G154901 NA non-coding upstream 112267 51294802 ~ 51299854 (+)
G154817 NA non-coding upstream 264224 51145536 ~ 51147897 (+)
G155492 NA non-coding downstream 13712 51430866 ~ 51501997 (+)
G155845 NA non-coding downstream 175688 51592842 ~ 51593164 (+)
G155940 LOC106613263 non-coding downstream 310367 51727521 ~ 51835110 (+)
G156000 LOC106560791 non-coding downstream 399356 51816510 ~ 51824182 (+)
G156027 NA non-coding downstream 448318 51865472 ~ 51889131 (+)
G154859 NA other upstream 244947 51165415 ~ 51167174 (+)
LOC110491026 LOC106560691 other upstream 1311647 50098387 ~ 50100624 (+)
G152167 NA other upstream 2854435 48556782 ~ 48557686 (+)
G150997 NA other upstream 3864542 47497948 ~ 47547579 (+)
G155541 NA other downstream 3693 51420847 ~ 51421122 (+)
G158778 LOC106560766 other downstream 2604454 54021608 ~ 54021904 (+)
G159415 NA other downstream 2935829 54352983 ~ 54353388 (+)
G159889 LOC106562215 other downstream 3311142 54728296 ~ 54728860 (+)

Expression


Co-expression Network