XLOC_020645 (ndufaf3)


Basic Information

Item Value
gene id XLOC_020645
gene name ndufaf3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 85597 ~ 94519 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040842
TGAGTGCGGCGGAAGTGGAAACCGGGGGTGCGTCGCACTAACCCGTCCGTGTGCGCTGATCAGCATGGCGGCGGTACGGCATCTGTGCCAGCGGACAGCGATCAGACTGCGGCTCACCTGCAGCCCACAGAGCCGaGTGTGTGTGGTGCGCGGACACAGACTCGGCCCTTTTGATGACGAGCAGTACCGGAAGACCTCCGTGTCCATCATGCAGAAGGAAGCTTCAGCCGGAACCGTCATCTACAGCTACAGCCCTCGAGGATTCAACATCAACGGAAACACAGTGTTTGGGCCGTGTGCTGTCCTGCCGCCCGCCATCCTGCAGTGGAACgtgggcAGTCACTCAGATATCTCGGTGGAGAGTCTGTCTCTGTTTTACCTGCTGGAGCCGCAGATCGagGTGCTGGTGTTGGGCACCGGGGCCCGCACAGAGCGACTGCATGCAGAAGTGCTGGAGGAGCTGAAGAAGAGAGGCATCGCTGTGGAGGTTCAAGACacgCCCAACGCCTGTGCAACTTTCAACTTCCTGTCCAGCGAGAAGCGTCTGGCGGCGGCTGCTCTGATCCCGCCCCCGGCTGGCAGCAGGTGAAGCAGAGCATCATGGGAGATGAAGTCACCtcacgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagggaataaacagattgtgtgtgtgtgcgctaatCTGTTAATCCGTCTCTCTGTCCTCTGTGATAGTGGGTTAATCTGAGCTCatgtctgaacacacacacacacacacacacacacagaggatcaGATTGACTGGAGCTGCTGATCTGTTTATATGATGCCGTGTCCGTCTGTACGCTCCTCATCACACACAGCAGACAGACGTGTGTTCAGATGTGCTGTAGAACAGGATGTGTGATCAATAAATGATGACAGGTCTCCCCGCGCCGTCTCACTGAGCTTTTATTAATGTTAGCATGTATTATTATCCAGCATTCACACATCCTCACACATGCCCACCTGCTGATCAGTGCCGTCAGTACATGTGCACCATCTCAACACtaggctctgtgtgtgtgtgtgtgtgagtgactaGAGTTTTAGTACAGCTTACCCATCACACTGTGTAGCAAACACAAACGACTGTATCACTTAATCAATTATTGAACAGGTAGAGGTGTGTGAGAAGTGTGTTTACGCCGCCGCCGGCGAGAGCAGCATTCGCCCTGACCGGTTTAAGGATTTCTAGAGAAATAAACCAACTGAAGTGTTCGCATTTAAGTGCGAGTCTGAggccgtacacacacacacacacacacacacacacacacacacacaccggggTATTTTATAAACAGGTTTCTTCACTCTTCATGTTAAAACACTTCTGTCCACATGAACAGGGCTGTGATGCATGTTAGGAGCACGCCGAGCCAGCAGGGGGCGATAACCAGTGTGCGAAATACACATTGACGATCAGGGCGGTCAACTTTCTCGGTAATGTTAGGGATCGTGTAATAACCGCTTCAGTGAGTCTAATTTATTGATAAACTTTATTTACGCTGTCGTGTTTGTGGGAGCGGCTGTTCAGAGTATTCCTGATGCACTATTTTCTGCTTACTATAGTCACTGTTCACACTACACATCTAAATAGACTTTAGGCCTGATGTGGAAACAGCTGTTGAATGAGGAAACACAGCTCGTCTGAATCTGCTGGcggattatgcattcacaatggtatgaaccgctATGGGGGGGTGGGCTGGGGGtcaaatatatattcattcattcattttccttcggctcagtcgaTTCatgaatctggggtcgccacagtggaatgaaccacctacttatctagcatatgtttgtGTAACCCatcactagggccagacggaatctgcggatgttttttgctatttctgcagagaattttggtaaaaatctgcggatttctgctgaattattttgggagtatcaaaactaaaaccttaacatatgaaacaaaaagtaataaattactgaataaaaactgaatgaatttagatttacacatttactcaagtaaattaacagaattaatgatgggcgaaaaatctgcggatttctgtgcgcgcagattcgtTGTGGGCCTACCCAACacagaaacattcacacacacactcatacactagtgccagtgtagttgatcagttcccctatagcgcatgtgtttggactgtgggggaaaccggagcacccggaggaaacccacaccaacacggggagaacatgcaaactccacacagaaacaccaactgattcggctgggactcgaaccagagaccttcttgctgtgaggtgtttgagctacccactgcgccaccgtgccgccccaaaCAAGTCATGAATCATTAATCATGGTTTGACAGTAATGGAGGAACGCCGCCGGTGGTAGAGGAGTGAGAGTAAGCGTTCCTCTCCAATCATTTACTGGAGTAAGAGTCTGTGAATGTACTCTGAAAGTAGCACTACTCAACTCTTTTACTCCAGTAAATGTAATTGGTTACCCGCCTCTGCTGTACCGGACCTACAGTAACTCTGAGATCTCAGAATGTTTGGGTTTCAGTCTCCTGATACTGCGTTTACTGAAGACGAACAGTGGAACCGCGTAGAAAAGAGTGCGGTGTTGAGAACAGCCCTGATCGTGTGGACAGAGCCTGAGCTCAACACGCTGCTCACTGGAGTCGTCTTGGTCTTGGTCTAGACTTTGTGCACATCCTACATTACAGAAAGGGGAAGCCAGCACAGCGATAACCAGCCTCCGCTTGTGTGTTTGGGATCTGATGTGGTCGGGTCAGTATAATGGATGTTCTCTGGAATCTTCTCAAGCGCTGGCTTCCtacactctgattggctgattctcAAACTGCCCAAATCACACCAGTTCTGAAAGAGATGAACGACTTTCGGCTAATTTTGGGCCCGTGCTGGCGGCGGTGTGAACACGGGTACTGTAGACATGAGAGATCCTGAGGATGAAGACGGTGTTCAGTGAGGGACGAGTGAGATTAATGACCCGGGAGTGTCCGCCAGTGTGGACTGAAGCAGAACTCCGGGTCAGCAGTGCACAGAAACACTGACCCCTGACCCAGAACTGATCATCCCTCATCCCTGTGTTGACTGATCTGATCTGGGTTGTGCAGGTTGTGTGGTGTTAGCATCACTCATCGGAGTCCGCGTCTGCATCCCGCGGGTCCCGGCAGCTGAACTCTGACCCTGTGATGCGGCGGTACAGGTCCATGATGTCCTCGGTGTCCGTCTGGAGGTGTGTGGAGGGGTCGTAGGAGCGCGAGATGAAGATCTGCAGGAAGACATACCAGCAATGCTACGTGACATCAGTGCTAAGGCCCGTTCACAGCAAACACGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacagaggagcgCTAACGACTTAAGCACTGGTGATGTTACCTGGCTCCTGCGGCCGTCGTCCGCGGGGACCATCAGGTTACTGACTGACAAGAACCTGCGGACAGAGAGAGCGTCAGTGATTGGCCAGTACCCATAATGCACTGCTCAGGTGTGGGACTCACTTCTCCAGGATGGGCTCCAGCAGTGCCAGCCCCGCCTGCACCTCCTTCTCTGGGTTACCAGTCTCCACCATAGTGCTGACGCAGGCGATGTACTTCCCTTCAGACGCCACATTATGAGTGTAGGACACCAGACACACGTACACatctgcacgcacacacacacacacacacacacacacacagttacagCACTCGAGCGTCCCCTACACTGCAGAAACGCTTGTCTGATTACAGTAATGCAGTCAGGTGTCTGCTAAAGTGGGCCGGTCTGAGGTGTAGATCTGACCTGACTTGCGGTTGAGCTGCGCCTGCGGGATGATGATCTGGCAGGAGTTGGCCTCATGGGTGTTTTTGATGGGGTGGTTGAGCAGGCACAGCACCCGCACCACCCGGCCCACCTTCTTGACCCGCTCCGGCAGGTAACTGGGGTCAGAGATGAGCTGCTTACAGCGGAAGACCTGCAGGAGTACACAGAGCGTCAGACCGGCTCGTGACCTGCTGACGAAGGAGCGTTCAGTGTCTAGTGCGGTAAAGCTTGTCCATGCTGTGATGAGCTCTCGTTAGCCTACACTAATGTTACCTGTGTGTCCTATCTCTCAGCACTGCTTCAGCTCCCTATTGAACATCGGATACATGCTCAAACCTCACTGACTCCCTGCAGAGCCCTGGACAGCTGAGCTCCAGTACTTGAGGAGCTGCTGGAGTATTGAAGCCCCTCATGCTCACTACGCTCATCTCATCCTGGATTAATAGATTATTCCTAGAAACACACTTCCCAACAAGACAGCGTGACGTGAACGGCATCTCCGCTTATGGTAGTCGGTTTCTCCTCCTCCGGTCTCCATAGTCCTGGACCCgcctgtatcctgagcagattcCTCGCTGCTGGTCTGCTTGGTTAGTGTGTCTGCATcgctggatttgctcttcagtgtttgggcttCCAGCAGTGACGCTTACTGATCTGAACTGAActctggactgaagcagtttcagcCGGTTTACTAGACCTTATCTGTGTTCAGCTGCTGTGACTCAGTCTACACTGTAGAAGCGCTGAAGAAAAACAGAGGAACTGTAGAGAGTGTTTCTGCTCACCTCTCCCTCCGACCGCACTGCCGCCACCCGCCCGCCCTCCAGCACCACCTCCTCCACCCGTCTGTTCAGCAGGAAGCTGTTCCCGTAGACAGCACTGAGcctgcggacacacacacaccttttacatcacacactgacacacactgacCCACACTGACCCCTGCCTGATGCACACTGACGAACACTGGCCCCACATCTGACACACTTGCAAACACTGACCCCACATCTCTGACCCACACTGACCCCACATCTGACCCCAGTCTGACCCACACTGACCCCAGTCTGACccacactgacacacactgacTCCACATCTGACCCACACTGACCCCAGTCTGACCCCAGTCTGACccacactgacacacactgacCCCACATCTGACCCACACTGACCCCATGCCTGACCCACACTGACCCCAGTCTGACAC
>TCONS_00040843
AGTGCTGTGTGCGCGTGTATTAAcagacggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagggagatatCTGTAGCCGTGATCAAACACTGAGGCACAATAAATATATGAGTGACAATATTATAAGGTTATTTGTCTGACAGTGAGTGCGGCGGAAGTGGAAACCGGGGGTGCGTCGCACTAACCCGTCCGTGTGCGCTGATCAGCATGGCGGCGGTACGGCATCTGTGCCAGCGGACAGCGATCAGACTGCGGCTCACCTGCAGCCCACAGAGCCGaGTGTGTGTGGTGCGCGGACACAGACTCGGCCCTTTTGATGACGAGCAGTACCGGAAGACCTCCGTGTCCATCATGCAGAAGGAAGCTTCAGCCGGAACCGTCATCTACAGCTACAGCCCTCGAGGATTCAACATCAACGGAAACACAGTGTTTGGGCCGTGTGCTGTCCTGCCGCCCGCCATCCTGCAGTGGAACgtgggcAGTCACTCAGATATCTCGGTGGAGAGTCTGTCTCTGTTTTACCTGCTGGAGCCGCAGATCGagGTGCTGGTGTTGGGCACCGGGGCCCGCACAGAGCGACTGCATGCAGAAGTGCTGGAGGAGCTGAAGAAGAGAGGCATCGCTGTGGAGGTTCAAGACacgCCCAACGCCTGTGCAACTTTCAACTTCCTGTCCAGCGAGAAGCGTCTGGCGGCGGCTGCTCTGATCCCGCCCCCGGCTGGCAGCAGGTGAAGCAGAGCATCATGGGAGATGAAGTCACCtcacgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagggaataaacagattgtgtgtgtgtgcgctaatCTGTTAATCCGTCTCTCTGTCCTCTGTGATAGTGGGTTAATCTGAGCTCatgtctgaacacacacacacacacacacacacacagaggatcaGATTGACTGGAGCTGCTGATCTGTTTATATGATGCCGTGTCCGTCTGTACGCTCCTCATCACACACAGCAGACAGACGTGTGTTCAGATGTGCTGTAGAACAGGATGTGTGATCAATAAATGATGACAGGTCTCCCCG

Function

symbol description
ndufaf3 Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be located in membrane; mitochondrion; and nucleus. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 18. Orthologous to human NDUFAF3 (NADH:ubiquinone oxidoreductase complex assembly factor 3).

GO:

id name namespace
GO:0032981 mitochondrial respiratory chain complex I assembly biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04714 Thermogenesis
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-070112-282 Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be located in membrane; mitochondrion; and nucleus. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 18. Orthologous to human NDUFAF3 (NADH:ubiquinone oxidoreductase complex assembly factor 3).

Ensembl:

ensembl_id ENSDARG00000112931

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040842 False 5356 mRNA 0.51 5 85597 94352
TCONS_00040843 True 1089 mRNA 0.54 6 89989 94519

Neighbor

gene id symbol gene type direction distance location
XLOC_020644 CABZ01101813.1 coding downstream 5064 76469 ~ 80533 (-)
XLOC_020643 CABZ01085139.1 coding downstream 28420 56644 ~ 57177 (-)
XLOC_020642 CABZ01085140.1 coding downstream 34719 44365 ~ 50878 (-)
XLOC_020641 NA coding downstream 49481 27146 ~ 36116 (-)
XLOC_020640 mrpl20 coding downstream 74771 9165 ~ 10826 (-)
XLOC_020646 NA coding upstream 6563 101082 ~ 101447 (-)
XLOC_020647 si:ch1073-335m2.2 coding upstream 36448 130967 ~ 155627 (-)
XLOC_020648 fblim1 coding upstream 63593 158112 ~ 164944 (-)
XLOC_020649 slc25a34 coding upstream 90151 184670 ~ 188112 (-)
XLOC_020650 fbxo42 coding upstream 97412 191931 ~ 193234 (-)
XLOC_020657 NA non-coding upstream 219191 313710 ~ 315380 (-)
XLOC_020664 NA non-coding upstream 298100 392619 ~ 395900 (-)
XLOC_020672 NA non-coding upstream 565398 659917 ~ 697504 (-)
XLOC_020673 NA non-coding upstream 605694 700213 ~ 704907 (-)

Expression


Co-expression Network